The Endangered Kashmir musk deer Moschus cupreus occurs in the western Himalayan region from Nepal to Afghanistan, but there is a lack of comprehensive and reliable information on its range. The region also harbours the Endangered Himalayan musk deer Moschus leucogaster, and this range overlap may have led to misidentification of the two musk deer species and errors in the delimitation of their ranges. Here, using genetic analysis of the mitochondrial DNA control region, we examined the phylogenetic relationship among musk deer samples from three regions in India: Ganderbal District in Jammu and Kashmir, and Kedarnath Wildlife Sanctuary and Nanda Devi Biosphere Reserve, both in Uttarakhand. The Bayesian phylogenetic analysis indicated a close genetic relationship between samples from Jammu and Kashmir, Kedarnath Wildlife Sanctuary and Nanda Devi Biosphere Reserve, validated by previously published sequences of Kashmir musk deer from Nepal. Our analyses confirmed the samples from Uttarakhand to be from the Kashmir musk deer, which was not previously known from this region. Therefore, we recommend further research in this area, to validate species identification and confirm the geographical distribution of the various species of musk deer. In addition, we recommend revision of the range of M. cupreus in the IUCN Red List assessment, to facilitate effective conservation and management of this Endangered species.

We propose three calibration scenarios of to date contemporary divergence of Anoplopomatidae (skilfish Erilepis zonifer and sablefish Anoplopoma fimbria) for a data set of two mtDNA loci (СOI and Control Region). The first scenario is based upon a fossil record and the second and third ones upon major palaeogeological events 3.5 and 15 Mya. Estimated evolution speeds indicate that COI evolves faster in the skilfish mitochondrial genome. There is also evidence of skilfish going through a bottleneck event limiting its genetic diversity in the relatively recent past near Japan. Sablefish had two refugia on both sides of the Pacific Ocean. The contemporary haplotype divergence was formed ~450 thousand years ago during an ice age in the Pleistocene and contemporary populations display no apparent geographic differentiation.

Nephrops norvegicus is a commercially valuable demersal fisheries species. Relatively little is understood about this species’ population dynamics across its distribution with previous mitochondrial and microsatellite studies failing to identify significant population-level differentiation. In this study, sequence variation in the mitochondrial (mtDNA) D-loop was analysed from samples across the distribution range, and compared with COI sequences for this species retrieved from GenBank. Analysis of a 375 bp fragment of the D-loop revealed significant genetic differentiation between samples from the North-east Atlantic and the east Mediterranean (FST = 0.107, P < 0.001). Tau (τ), theta (θ0 and θ1) and Fu's FS values suggest the species spread between 10,500 to 19,000 ybp and subsequently expanded rapidly across the Atlantic.

The genetic relationship between fiddler crab Uca crassipes populations from the continental coast, continental islands, and oceanic islands in the west Pacific was investigated using 1039 bp (base pairs)-long combined 12Sr-RNA–16Sr-RNA sequences and a 504-bp mitochondrial DNA control region. The combined 12Sr-RNA–16Sr-RNA sequences indicated that the Vietnamese population, located along the continental coast, and the Chichi-jima population, which is located on an oceanic island north of the Northern Mariana Islands, formed different clades than populations from the other Ryukyu Islands and Moorea Island. Conversely, the Ryukyu Islands and Moorea Island populations exhibited a close genetic relationship, although the mtDNA control region indicated significant differentiation between the Ryukyu Islands and Moorea Island populations. The isolated Vietnam and Chichi-jima populations exhibited higher genetic diversity in the control region than the other populations.

The land crab, Discoplax celeste (Gecarcinidae) is endemic to Christmas Island in the Indian Ocean. Due to a freshwater-dependant life history, in which the megalopae migrate from the ocean up freshwater streams to their adult terrestrial/freshwater habitat, D. celeste inhabits only a few isolated locations on the island. This restricted distribution is one of a number of factors which has previously highlighted the vulnerability of this species to outside threats. A number of anthropogenic factors including the introduction of multiple invasive species and habitat destruction have led to drastic ecosystem change on Christmas Island. The aim of this study was to investigate whether the restricted geographical distributions of D. celeste populations contribute to significant genetic structuring across Christmas Island, with an objective to inform future conservation strategies for this species on Christmas Island. Fragments of the mitochondrial cytochrome oxidase I gene and the control region were sequenced from 95 individuals collected from all five locations on Christmas Island known to be inhabited by D. celeste. Analyses using analysis of molecular variance revealed no evidence of population sub-structuring, indicating that despite any geographical isolation, there is a single population of D. celeste on Christmas Island. This lack of population differentiation is probably explained by the oceanic dispersal of larvae, rather than terrestrial migration of D. celeste. Therefore, based on these results, for conservation purposes, D. celeste on Christmas Island can be considered a single management unit.

The population genetic structure of the mantis shrimp, Oratosquilla oratoria, in Hong Kong waters was determined using 923 base pairs of mitochondrial DNA control region sequences. Samples were collected from six localities including the open-waters and sheltered bays in both the eastern and western waters of Hong Kong. Twenty-seven haplotypes were detected in 99 individuals. A high overall haplotype diversity (h = 0.886), with a low nucleotide diversity (π = 0.0026), was observed, and the haplotype minimum spanning network suggested that rapid expansion might have occurred among the total stomatopod population. Genetic homogeneity was observed over a meso-scale distance (80–100 km) whilst there were significant genetic differentiations between all pairs of the six samples. Partition of genetic variability based on hydrographic conditions did not reveal significant differentiations between: (1) eastern and western waters; and (2) open-waters and sheltered bays; but showed high levels of variation both within groups and within samples. Unexpectedly, genetic distance did not correlate with hydrographic distance among the samples. Results demonstrated a genetic patchiness pattern of O. oratoria in Hong Kong waters that may be attributable to the interplay between hydrographic conditions (e.g. salinity) and the species' life history traits.

We analysed the mtDNA control region (HV1) of 93 tissue samples from all five populations of the saiga antelope Saiga tatarica. The results show a slight but clear distinction between S. t. mongolica and S. t. tatarica, supporting the current designation of S. t. mongolica as a subspecies rather than a separate species. Levels of genetic diversity were low in S. t. mongolica, consistent with the small size of its population and long isolation. Although populations of S. t. tatarica have reasonable levels of genetic diversity, their conservation status is perilous. The Kalmykian and Kazakhstan samples each contained unique haplotypes, although the species as a whole appears polyphyletic, consistent with recent fragmentation and rapid population decline. An understanding of the population genetics of this species is an essential prerequisite for conservation action.