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Despite widespread use of radio-echo sounding (RES) in glaciology and broad distribution of processed radar products, the glaciological community has no standard software for processing impulse RES data. Dependable, fast and collection-system/platform-independent processing flows could facilitate comparison between datasets and allow full utilization of large impulse RES data archives and new data. Here, we present ImpDAR, an open-source, cross-platform, impulse radar processor and interpreter, written primarily in Python. The utility of this software lies in its collection of established tools into a single, open-source framework. ImpDAR aims to provide a versatile standard that is accessible to radar-processing novices and useful to specialists. It can read data from common commercial ground-penetrating radars (GPRs) and some custom-built RES systems. It performs all the standard processing steps, including bandpass and horizontal filtering, time correction for antenna spacing, geolocation and migration. After processing data, ImpDAR's interpreter includes several plotting functions, digitization of reflecting horizons, calculation of reflector strength and export of interpreted layers. We demonstrate these capabilities on two datasets: deep (~3000 m depth) data collected with a custom (3 MHz) system in northeast Greenland and shallow (<100 m depth, 500 MHz) data collected with a commercial GPR on South Cascade Glacier in Washington.
Major depressive disorder and neuroticism (Neu) share a large genetic basis. We sought to determine whether this shared basis could be decomposed to identify genetic factors that are specific to depression.
We analysed summary statistics from genome-wide association studies (GWAS) of depression (from the Psychiatric Genomics Consortium, 23andMe and UK Biobank) and compared them with GWAS of Neu (from UK Biobank). First, we used a pairwise GWAS analysis to classify variants as associated with only depression, with only Neu or with both. Second, we estimated partial genetic correlations to test whether the depression's genetic link with other phenotypes was explained by shared overlap with Neu.
We found evidence that most genomic regions (25/37) associated with depression are likely to be shared with Neu. The overlapping common genetic variance of depression and Neu was genetically correlated primarily with psychiatric disorders. We found that the genetic contributions to depression, that were not shared with Neu, were positively correlated with metabolic phenotypes and cardiovascular disease, and negatively correlated with the personality trait conscientiousness. After removing shared genetic overlap with Neu, depression still had a specific association with schizophrenia, bipolar disorder, coronary artery disease and age of first birth. Independent of depression, Neu had specific genetic correlates in ulcerative colitis, pubertal growth, anorexia and education.
Our findings demonstrate that, while genetic risk factors for depression are largely shared with Neu, there are also non-Neu-related features of depression that may be useful for further patient or phenotypic stratification.
Analysis of human remains and a copper band found in the center of a Late Archaic (ca. 5000–3000 cal BP) shell ring demonstrate an exchange network between the Great Lakes and the coastal southeast United States. Similarities in mortuary practices suggest that the movement of objects between these two regions was more direct and unmediated than archaeologists previously assumed based on “down-the-line” models of exchange. These findings challenge prevalent notions that view preagricultural Native American communities as relatively isolated from one another and suggest instead that wide social networks spanned much of North America thousands of years before the advent of domestication.
OBJECTIVES/SPECIFIC AIMS: The central goal of this proposal is to characterize the mechanisms that mediate success or failure of immature intestinal barrier in necrotizing enterocilitis. METHODS/STUDY POPULATION: To do this, I will utilize stem cell derived human intestinal organoids (HIOs), an innovative model of the immature intestine, and a cohort of bacterial isolates collected from premature infants who developed NEC to interrogate the cause-effect relationship of these strains on maintenance of the intestinal barrier. I hypothesize that the epithelial response to bacterial colonization is strain-dependent and results in differences in inflammatory signaling that shape epithelial barrier function in the immature intestine. RESULTS/ANTICIPATED RESULTS: Preliminary data shows that colonization of HIOs with different bacteria leads to species-specific changes in barrier function, and some species selectively damage the epithelial barrier while others enhance epithelial barrier function. I have identified key inflammatory signals that serve as central drivers of intestinal barrier function. DISCUSSION/SIGNIFICANCE OF IMPACT: Characterization of this process is expected to substantially advance scientific understanding of early events in NEC pathogenesis and lead to new opportunities for targeted therapeutic intervention to accelerate barrier maturation or prevent hyperinflammatory reactivity in the neonatal intestine. The research proposed in this application represents an entirely novel approach to studying host-microbial interactions in the immature. Conceptually, this novel translational approach will help to define the pivotal role of colonizing bacteria in initiating epithelial inflammation in NEC patients.
Brette contends that the neural coding metaphor is an invalid basis for theories of what the brain does. Here, we argue that it is an insufficient guide for building an artificial intelligence that learns to accomplish short- and long-term goals in a complex, changing environment.
Intelligence and educational attainment are strongly genetically correlated. This relationship can be exploited by Multi-Trait Analysis of GWAS (MTAG) to add power to Genome-wide Association Studies (GWAS) of intelligence. MTAG allows the user to meta-analyze GWASs of different phenotypes, based on their genetic correlations, to identify association's specific to the trait of choice. An MTAG analysis using GWAS data sets on intelligence and education was conducted by Lam et al. (2017). Lam et al. (2017) reported 70 loci that they described as ‘trait specific’ to intelligence. This article examines whether the analysis conducted by Lam et al. (2017) has resulted in genetic information about a phenotype that is more similar to education than intelligence.
We analyze Sun-as-a-star observations spanning over solar cycles 22 – 24 from the ground-based network BiSON and solar cycles 23 – 24 collected by the space-based VIRGO and GOLF instruments on board the SoHO satellite. Using simultaneous observations from all three instruments, our analysis suggests that the structural and magnetic changes responsible for modifying the frequencies remained comparable between cycle 23 and cycle 24 but differ from cycle 22. Thus we infer that the magnetic layer of the Sun has become thinner since the beginning of cycle 23 and continues during the current cycle.
We introduce the notion of exact tilting objects, which are partial tilting objects
inducing an equivalence between the abelian category generated by
and the category of modules over the endomorphism algebra of
. Given a chain of sufficiently negative rational curves on a rational surface, we construct an exceptional sequence whose universal extension is an exact tilting object. For a chain of
-curves, we obtain an equivalence with modules over a well-known algebra.
Cardiac rhabdomyomas are the most common tumours in children and are typically seen in association with the tuberous sclerosis complex. Although benign and often associated with spontaneous regression, in rare circumstances surgical resection is indicated to relieve obstruction or other mass-related effects. Recent clinical trials have demonstrated the benefits of mammalian target of rapamycin inhibitors for the treatment of other tumour sub-types associated with tuberous sclerosis. Here we report rapid regression of several massive cardiac rhadomyomas in two neonates with the use of the mammalian target of rapamycin inhibitor sirolimus.
We examine the role of status quo bias in the ballot wording of social issues that affect the rights of minority groups. We test the salience of this framing bias by conducting an experiment that randomly assigns different ballot wordings for five policies across survey respondents. We find that status quo bias changes the percent of individuals who vote for the ballot measure by 5–8 percentage points with the least informed individuals being the most affected by status quo bias.
A complete text-to-speech system has been created by the authors, based on a tube resonance model of the vocal tract and a development of Carré’s “Distinctive Region Model”, which is in turn based on the formant-sensitivity findings of Fant and Pauli (1974), to control the tube. In order to achieve this goal, significant long-term linguistic research has been involved, including rhythm and intonation studies, as well as the development of low-level articulatory data and rules to drive the model, together with the necessary tools, parsers, dictionaries and so on. The tools and the current system are available under a General Public License, and are described here, with further references in the paper, including samples of the speech produced, and figures illustrating the system description.
Adequate nutrition is critical for optimal growth and development. However, young children may be at risk of nutrient deficiencies when transitioning to weaning foods for a variety of reasons. Supplementation with fortified milk may provide potentially lacking essential nutrients, but effects on growth and nutritional status are yet to be established.
Five databases were searched for randomised controlled trials using fortified milk against control milk in young children. Outcomes were growth, body composition and/or biochemical markers. Pooled differences in means were calculated for continuous outcomes and odds ratios for binary outcomes.
Randomised controlled trials set in any country.
Otherwise healthy children aged 6–47 months.
Fifteen articles met the eligibility criteria. Fortification varied from Fe, Zn, vitamins, essential fatty acids, to pre- and/or probiotics. Frequently reported outcomes were weight, height and Fe status. Studies varied in geographical location, sample size and duration. Fortified milk had minimal effects on weight gain (mean difference=0·17 kg; 95 % CI 0·02, 0·31 kg) compared with control milk. The risk of anaemia was reduced in fortified milk groups (OR=0·32; 95 % CI 0·15, 0·66) compared with control groups. There were no significant effects on height gain, changes in body composition or Hb concentration.
Fortified milk is an effective source of complementary nutrition to supplement children in need when consumed in appropriate amounts in addition to a normal diet. Due to compositional differences, further research on fortified milk is warranted before making global recommendations on benefits for growth and nutritional outcomes in young children.
Background: Stroke patients of lower socioeconomic status have worse outcomes. It remains poorly understood whether this is due to illness severity or personal or health system barriers. We explored the experiences of stroke patients with financial barriers in a qualitative descriptive pilot study, seeking to capture perceived challenges that interfere with their poststroke health and recovery. Methods: We interviewed six adults with a history of stroke and financial barriers in Alberta, Canada, inquiring about their: (1) experiences after stroke; (2) experience of financial barriers; (3) perceived reasons for financial barriers; (4) health consequences of financial barriers; and (5) mechanisms for coping with financial barriers. Two reviewers analyzed data using inductive thematic analysis. Results: The participants developed new or worsened financial circumstances as a consequence of stroke-related disability. Poststroke impairments and financial barriers took a toll on their mental health. They struggled to access several aspects of long-term poststroke care, including allied health professional services, medications, and proper nutrition. They described opportunity costs and tradeoffs when accessing health services. In several cases, they were unaware of health resources available to them and were hesitant to disclose their struggles to their physicians and even their families. Conclusion: Some patients with financial barriers perceive challenges to accessing various aspects of poststroke care. They may have inadequate knowledge of resources available to them and may not disclose their concerns to their health care team. This suggests that providers themselves might consider asking stroke patients about financial barriers to optimize their long-term poststroke care.
This study examines the interplay between individual and social–developmental factors in the development of positive functioning, substance use problems, and mental health problems. This interplay is nested within positive and negative developmental cascades that span childhood, adolescence, the transition to adulthood, and adulthood. Data are drawn from the Seattle Social Development Project, a gender-balanced, ethnically diverse community sample of 808 participants interviewed 12 times from ages 10 to 33. Path modeling showed short- and long-term cascading effects of positive social environments, family history of depression, and substance-using social environments throughout development. Positive family social environments set a template for future partner social environment interaction and had positive influences on proximal individual functioning, both in the next developmental period and long term. Family history of depression adversely affected mental health functioning throughout adulthood. Family substance use began a cascade of substance-specific social environments across development, which was the pathway through which increasing severity of substance use problems flowed. The model also indicated that adolescent, but not adult, individual functioning influenced selection into positive social environments, and significant cross-domain effects were found in which substance-using social environments affected subsequent mental health.
Methods were developed and tested for mapping the distribution of Scotch broom, an invasive shrub species expanding its range and disrupting native species and habitats in several parts of the world. During spring, the Scotch broom produces yellow flowers. Landsat imagery during the flower bloom period and during summer was acquired for several years for a study area on Vancouver Island, British Columbia, Canada. Ground-based reflectance measurements plus statistical separability tests were conducted to determine the effectiveness for identifying Scotch broom with Landsat spectral bands, band ratios, vegetation indices, and combinations of bloom and nonbloom imagery. Maximum likelihood classifications of three Scotch broom density classes (dense, ≥ 75% cover; moderate, 25 to 75%; low, 10 to 25%) and other land covers were run with various image and band sets and tested against independent reference sites. Accuracies of classifications using the better band combinations for moderate and dense Scotch broom patches combined were on the order of 80%, with unreliable results for sites of low Scotch broom density. Scotch broom patches less than 0.5 ha were often missed. Some commission error occurred (areas erroneously classified as Scotch broom). Suggested improvements are the use of time series of classifications over multiple years, incorporating knowledge of Scotch broom spread mechanisms or temperature and elevation limitations, and use of higher resolution satellites if the expense warrants it. Despite some limitations, a satellite-based remote sensing approach may be useful for aspects of Scotch broom management.
Protohistoric Ancestral Apache Dismal River groups (A.D. 1600–1750)
participated in large exchange networks linking them to other peoples on the
Plains and U.S. Southwest. Ceramic vessels made from micaceous materials
appear at many Dismal River sites, and micaceous pottery recovered from the
Central High Plains is typically seen as evidence for interaction with
northern Rio Grande pueblos. However, few mineral or chemical
characterization analyses have been conducted on these ceramics, and the
term “micaceous” has been applied to a broad range of vessel types
regardless of the form, size, or amount of mica in their pastes. Our recent
analyses, including macroscopic evaluation combined with petrography and
neutron activation analyses (NAA), indicate that only a small subset of
Dismal River sherds are derived from New Mexico clays. The rest were likely
manufactured using materials from Colorado and Wyoming. Seasonal mobility
patterns may have given Dismal River potters the opportunity to collect mica
raw materials as they traveled between the Central Plains and Front Range,
and this has implications for the importance of internal Plains social
networks during the Protohistoric and Historic periods.