The Southern Hemisphere lichen genus Villophora in subfamily Teloschistoideae is analyzed based on DNA sequence data. Six species are described, five of which are new to science: V. darwiniana and V. wallaceana grow on lignum and bark in southern Patagonia and Tierra del Fuego; V. onas and V. patagonica are lichenicolous or saxicolous on rocks in southern Patagonia; V. rimicola is saxicolous in Antarctica. Based on a three-gene DNA analysis, Tayloriellina is shown to be closely related to Villophora, and Tayloriellina microphyllina is established as a new combination. A key is provided to all species of the two genera. Raesaeneniana maulensis is combined into Villophora.

A new lichen species is described from specimens growing on Fraxinus trees north of Eindhoven (the Netherlands). Morphological and genetic studies suggest that the new species belongs in the genus Catillaria, and the name Catillaria flexuosa is proposed because of its flexuose apothecia. The new species is characterized by the relatively large apothecia (up to 0.9 mm diam.) and relatively thick, knobby to ±subsquamulose, greenish, thallus. Due to their similar morphological features, C. flexuosa can be easily confused with Catillaria chalybeia, C. fungoides or C. nigroclavata, so it is therefore compared with these species. In addition, Arthonia epiphyscia is reported being a very rare species in the Netherlands.

To facilitate population-genetic studies, we developed simple sequence repeat (SSR) markers and a molecular species identification assay for Peltigera membranacea (Ascomycota, Peltigerales), a common ground-dwelling lichen of forest and tundra ecosystems. Additional markers were developed for its Nostoc photobiont. Twenty-one fungal markers for P. membranacea were found to be polymorphic, with the number of alleles ranging from 3–21. Nei's unbiased gene diversity ranged from 0.588 to 0.640 in four significantly structured (FST = 0.059) mycobiont populations. For the Nostoc photobiont, 14 polymorphic SSR were developed, yielding 4–14 alleles each, with gene diversity ranging from 0.062 to 0.771 in four populations showing substantial population structure (FST = 0.278). The new markers developed are suitable for population genetic studies of Peltigera membranacea and of its cyanobiont, and at the same time allowed us to distinguish 98.5% of P. membranacea specimens from morphologically similar species of Peltigera.

The new species Aspicilia malvinae is described from the Falkland Islands. It is the first species of Megasporaceae to be discovered on the islands and only the seventh to be reported from South America. It is distinguished from other species of Aspicilia by the unusual secondary metabolite chemistry (hypostictic acid) and molecular sequence data. The collections of the new species support two lichenicolous fungi: Endococcus propinquus s. lat., which is new to the Falkland Islands, and a new species of Sagediopsis with small perithecia and 3-septate ascospores c. 18–20 × 4–5 μm, which is described here as S. epimalvinae. A total of 60 new DNA sequences obtained from species of Megasporaceae (mostly Aspicilia) are also introduced.

Inland dune ecosystems are rich in terricolous lichen species. However, these communities are sensitive to human activities, both locally and globally. Since terricolous lichens have a dominant role in semi-arid sandy grasslands, it is important to explore the composition of their communities and the environmental factors affecting them. We studied the structure of the terricolous lichen assemblages of calcareous grassland in an inland duneland ecosystem by comparing the lichen communities of arid and humid dune sides on two sites with different disturbance histories. Microcoenological data were collected according to the Braun-Blanquet method. Environmental variables include the cover of bare soil, moss, litter, herb cover and height of herbs. We investigated the relationship of these variables and the presence and absence data of terricolous lichen species to sites and dune side. We found that the site had a significant effect on species richness that might reflect the different types and severity of previous disturbance events at the studied sites. On a smaller, ‘dune’ scale, in general lower herb cover and height and a higher moss cover were characteristic of arid dune sides. Most of the frequent species were negatively affected by higher moss cover. Some lichen species were more abundant (e.g. Cladonia furcata) or found only (e.g. Xanthoparmelia subdiffluens, Gyalolechia fulgens) on arid dune sides, while others preferred (e.g. C. pyxidata) or occurred only on (e.g. Peltigera species, C. rei) humid sides. It was observed that the impact of the dune side on several variables differed between sites. The diverse microhabitat types, microclimate and landscape structure, results in species-rich and valuable terricolous lichen communities forming in inland dune ecosystems.

The genus Thelopsis was classified in the family Stictidaceae but its systematic position has never been investigated by molecular methods. In order to determine its family placement and to test its monophyly, fungal DNA of recent collections of Thelopsis specimens was sequenced. Phylogenetic analyses using nuLSU, RPB2 and mtSSU sequences reveal that members of Thelopsis form a monophyletic group within the genus Gyalecta as currently accepted. The placement of Thelopsis, including the generic type T. rubella, within the genus Gyalecta challenges the generic circumscription of this group because Thelopsis is well recognized by the combination of morphological characters: perithecioid ascomata, well-developed periphysoids, polysporous asci and small, few-septate ellipsoid-oblong ascospores. The sterile sorediate Opegrapha corticola is also placed in the Gyalectaceae as sister species to Thelopsis byssoidea + T. rubella. Ascomata of O. corticola are illustrated for the first time and support its placement in the genus Thelopsis. The hypothesis that O. corticola might represent the sorediate fertile morph of T. rubella is not confirmed because the species is phylogenetically and morphologically distinct. Thelopsis is recovered as polyphyletic, with T. melathelia being placed as sister species to Ramonia. The new combinations Thelopsis corticola (Coppins & P. James) Sanderson & Ertz comb. nov. and Ramonia melathelia (Nyl.) Ertz comb. nov. are introduced and a new species of Gyalecta, G. amsterdamensis Ertz, is described from Amsterdam and Saint-Paul Islands, characterized by a sterile thallus with discrete soralia. Petractis luetkemuelleri and P. nodispora are accommodated in the new genus Neopetractis, differing from the generic type (P. clausa) by having a different phylogenetic position and a different photobiont. Francisrosea bicolor Ertz & Sanderson gen. & sp. nov. is described for a sterile sorediate lichen somewhat similar to Opegrapha corticola but having an isolated phylogenetic position as sister to a clade including Gyalidea praetermissa and the genera Neopetractis and Ramonia. Gyalecta farlowii, G. nidarosiensis and G. carneola are placed in a molecular phylogeny for the first time. The taxonomic significance of morphological characters in Gyalectaceae is discussed.

To improve the efficiency of isolating and culturing lichen mycobionts, we performed a growth assay on an Australian strain of the soil-crust lichenized fungus Endocarpon pusillum Hedw. This assay determined the preferred nitrogen and carbon sources of the fungus by limiting the available nitrogen or carbon sources to single compounds found in soils, plants and lichen thalli. We found that the non-proteinaceous amino acid, GABA, produced the most growth of all nutrients when provided as the sole nitrogen source but was a poor carbon source. Fructose, glucose, cellobiose and sorbitol produced the most growth of all the carbon sources tested. Ammonium, nitrate and polyamines were poor nutrient sources. These findings correspond with reports of primary metabolite pools in other lichen species and may guide future studies involving growth of recalcitrant lichen mycobionts.

Caloplaca tephromelae Kantvilas, Suija & Motiej., a lichenicolous species growing on saxicolous thalli of species of Tephromela, is described from Tasmania. The new species is characterized by lecanorine to zeorine apothecia with a whitish grey thalline margin devoid of anthraquinone pigments, a non-inspersed hymenium, paraphyses without oil vacuoles and ascospores 10–14 × 5–8 μm, with a septum 5–8 μm thick. It is compared with selected taxa of Caloplaca s. lat. that share these salient features. Molecular data support the distinctiveness of the new species but do not suggest any obvious close relatives.

Epiphytic lichens are sensitive to deteriorating air quality, but levels of nitrogen and especially sulphur deposition have been in decline over most of Europe in recent decades. We assessed the response of epiphytic lichens to this decline, using data from long-term monitoring sites in Sweden. We analyzed 20 years of data to investigate temporal trends in lichen communities’ sensitivity to sulphur, nitrogen preference, species richness and alpha and beta diversity. We found only limited and partial evidence of recovery in the area that previously had high levels of deposition, and a decline in mean sulphur sensitivity at a northern site with low deposition levels throughout the monitoring period. The slow recolonization of sensitive species, even where environmental conditions are now suitable, is probably a result of impoverished regional species pools and the inherent limited dispersal capacity of many lichen species. We suggest due consideration of these factors in the use of epiphytic lichens as environmental indicators in a period of improving air quality.

The tropical areas of eastern Asia contain a high diversity of foliicolous lichens, including various species of the genus Badimia. Badimia xanthocampylidia W. C. Wang & J. C. Wei is described from tropical rainforests in southern China and Thailand based on morphology, chemistry, and combined mtSSU, ITS and nrLSU sequences. It is characterized by a pale green thallus with yellow verrucae and bright yellow campylidia and the presence of isousnic acid. Three other species, B. multiseptata Papong & Lücking, B. pallidula (Kremp.) Vězda and B. polillensis (Vain.) Vězda, are discussed and the genus Badimia is newly reported from China. A worldwide key to currently known species in the genus is presented.

In our earlier work, we demonstrated that the oxidases tyrosinase (TYR), laccase (LAC), and a heme peroxidase (POX) occur widely in lichens. Here we report on the occurrence of another oxidoreductase enzyme, quinone reductase (QR) (EC 1.6.5.5). While QR has been reported to occur widely in other organisms, there is currently no information on QR activities in lichens. Here we present a survey of QR activity in 14 species of lichens. Results demonstrate that QR activity is readily detectable in all lichen species tested. However, activities vary greatly, with ‘jelly’ lichens in the genera Collema and Leptogium having the highest activities. QR, LAC and POX are all believed to have a role in extracellular hydroxyl radical production. However, in this study no correlation was found between the activities of these enzymes and the rates at which hydroxyl radicals were produced. Possible roles for QR in lichen biology are discussed.

Lecanora s. lat. is a genus of crustose, rarely placodioid lichens comprising c. 1000 recognized species and subdivided into several morphology-based groups. Some of these groups have been supported in phylogenetic analyses and segregated as new genera. One of the remaining groups that has not been previously studied by molecular methods in much detail, the L. saligna-group, includes corticolous and lignicolous crustose lichens, usually containing isousnic or usnic acid (or both) as major secondary metabolites. As part of our ongoing project ‘Lecanomics’, a phylogenetic analysis based on two loci was conducted and found the L. saligna-group to be divided into two main clades and several well-supported minor clades. The L. varia clade, chosen as one of the outgroups, emerged within the L. saligna-group. The majority of the clades are characterized by phenotypic differences. However, several well-supported clades share similarities with their sister groups, suggesting that species circumscriptions based solely on phenotypic characters may be too conservative to characterize the true species diversity present within the group. Also, there is evidence for some geographical separation of lineages; for example, most North American individuals, previously known as Lecanora saligna and L. albellula, form two clades separate from their European namesakes and are here preliminarily called ‘Lecanora sp. B’, ‘Lecanora sp. C’ and ‘Lecanora sp. D’. However, L. saligna and L. albellula also appear to occur in North America, and some specimens from the Caucasus and Iran cluster within the North American clades. Lecanora anopta and L. subravida are reported for the first time from Iran.

Internal cephalodia of Lobaria pulmonaria were examined in two British locations, one in western Scotland (Isle of Skye) and the other in England (Cumbria, Lake District), sites which were predicted to have contrasting levels of fixed nitrogen deposition. Cephalodia were found to occupy a small proportion of the total biomass averaging (<1%) in both areas. Modelled nitrogen deposition in the sites in Cumbria was 3–6 times higher than in the Skye sites but the cephalodium relative biomass was not significantly different. It is suggested that local climatic and topographic effects might have reduced the estimated rate of nitrogen deposition at the former sites.

The genus Micarea was studied for the first time in the Taita Hills, Kenya. Based on new collections and existing data, we reconstructed a phylogeny using ITS, mtSSU and Mcm7 regions, and generated a total of 27 new sequences. Data were analyzed using maximum likelihood and maximum parsimony methods. Based mainly on new collections, we discovered four undescribed well-supported lineages, characterized by molecular and phenotypic features. These lineages are described here as Micarea pumila, M. stellaris, M. taitensis and M. versicolor. Micarea pumila is characterized by a minutely granular thallus, small cream-white or pale brownish apothecia, small ascospores and the production of prasinic acid. Micarea stellaris has a warted-areolate thallus, cream-white apothecia usually darker at the centre, a hymenium of light grey or brownish pigment that dissolves in K, and intense crystalline granules that appear as a belt-like continuum across the lower hymenium when studied in polarized light. Micarea taitensis is characterized by a warted-areolate thallus and cream-white or yellowish apothecia that sometimes produce the Sedifolia-grey pigment. Micarea versicolor is characterized by a warted-areolate, sometimes partly granular thallus and apothecia varying from cream-white to light grey to blackish in colour. This considerable variation in the coloration of its apothecia is caused by an occasional mixture of the Sedifolia-grey pigment in the epihymenium and another purplish brown pigment in the hymenium. Micarea stellaris, M. taitensis and M. versicolor produce methoxymicareic acid. The main distinguishing characters are presented in a species synopsis. Three of the new species are nested in the M. prasina group, and the fourth one (M. taitensis) resolves as a basal taxon to the M. prasina group. The new species inhabit montane cloud forests, which have fragmented dramatically throughout the Eastern Arc Mountains in recent decades.

The maintenance of protected lichen species and their biodiversity in general depends on good management practices based on their distribution and habitat preferences. To date, 10 of the 17 protected lichen species of Hungary have been recorded in the Bakony Mts including the Balaton Uplands region. Habitat preferences of three protected Cladonia species (C. arbuscula, C. mitis and C. rangiferina) growing on underlying rocks of red sandstone, basalt, Pannonian sandstone and gravel were investigated by detailed sampling. We recorded aspect, underlying rock type, soil depth, pH and CaCO3 content, habitat type (as defined by the General National Habitat Classification System Á-NÉR), all species of lichen, bryophyte and vascular plants as well as percentage cover of exposed rock, total bryophytes, lichens, vascular plants and canopy, degree of disturbance and animal impacts. Sporadic populations of these species mostly exist at the top of hills and mountains in open acidofrequent oak forests, but they may occur in other habitats, such as closed acidofrequent oak forests, slope steppes on stony soils, siliceous open rocky grasslands, open sand steppes, wet and mesic pioneer scrub and dry Calluna heaths. Cladonia rangiferina was found to grow beneath higher canopy cover than either C. arbuscula or C. mitis in the Balaton Uplands. Furthermore, there were significant differences in canopy cover between occupied and unoccupied quadrats in the case of all three species. Cladonia rangiferina is a good indicator species of natural habitats in Hungary due to its restricted distribution and low ecological tolerance. These results may lead to the adoption of effective conservation methods (e.g. game exclusion, artificial dispersal) in the future.