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Crystal and molecular structure of 1-amino-4-methoxycarbonyl-3-methyl-8-oxopyrazolo[1,5-a]pyrimidine monohydrate from laboratory powder data

Published online by Cambridge University Press:  10 January 2013

V. V. Chernyshev
Affiliation:
Moscow State University, Department of Chemistry, 119899 Moscow, Russia
A. V. Yatsenko
Affiliation:
Moscow State University, Department of Chemistry, 119899 Moscow, Russia
V. A. Tafeenko
Affiliation:
Moscow State University, Department of Chemistry, 119899 Moscow, Russia
E. J. Sonneveld
Affiliation:
University of Amsterdam, Laboratory of Crystallography, Nieuwe Achtergracht 166, Amsterdam, 1018 WV, The Netherlands
H. Schenk
Affiliation:
University of Amsterdam, Laboratory of Crystallography, Nieuwe Achtergracht 166, Amsterdam, 1018 WV, The Netherlands
V. A. Makarov
Affiliation:
State Scientific Center “NIOPIK,” Department of Medicinal Chemistry, B. Sadovaya str. 1-4, 103787 Moscow, Russia

Abstract

The crystal structure of 1-amino-4-methoxycarbonyl-3-methyl-8-oxopyrazolo[1,5-a]pyrimidine monohydrate, C9H10N4O3·H2O, from the family of pyrazolo[1,5-a]pyrimidines which demonstrate an activity against the influenzavirus A and coxsackievirus B3, has been determined from laboratory (Guinier-Johannson photograph) powder diffraction data using a grid search procedure. Parameters of the monoclinic cell (P21/a, No. 14, Z=4) at 295 K are a=11.599(7) Å, b=11.550(7) Å, c=8.575(5) Å, β=110.76(4)°. Rietveld refinement (full-pattern-decomposition) gave χ2=4.8(4.5), Rp=0.048(0.043), Rwp=0.065(0.062). The observed microstrain-induced anisotropy of diffraction line broadening was approximated by a quartic form in h,k,l. The obtained results allowed to distinguish between several isomers which were indistinguishable by others methods.

Type
Research Article
Copyright
Copyright © Cambridge University Press 1999

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References

Bérar, J.-F., and Lelann, P. (1991). “E.S.D.'s and estimated probable error obtained in Rietveld refinements with local correlations,” J. Appl. Crystallogr. 24, 15.CrossRefGoogle Scholar
Chernyshev, V. V., and Schenk, H. (1998). “A grid search procedure of positioning a known molecule in an unknown crystal structure with the use of powder diffraction data,” Z. Kristallogr. 213, 13.CrossRefGoogle Scholar
Chernyshev, V. V., Fitch, A. N., Sonneveld, E. J., Kurbakov, A. I., Makarov, V. A., and Tafeenko, V. A. (1999). “Crystal and molecular structures of [1-(2-aminoethyl)-1,2-dihydroimidazolidene-2]nitroaceto-nitrile (C 7H 11N 5O 2) and 3,7-diamino-4-nitro-6-hydroxy-8-oxopyrazolo [1,5-a]pyrimidine monohydrate (C 6H 6N 6O 4+H 2O) from X-ray, synchrotron and neutron powder diffraction data,” Acta Crystallogr., Sect. B: Struct. Sci. (in press).Google Scholar
Chernyshev, V. V., Yatsenko, A. V., Tafeenko, V. A., Zhukov, S. G., Aslanov, L. A., Sonneveld, E. J., Schenk, H., Makarov, V. A., Granik, V. G., Trounov, V. A., and Kurbakov, A. I. (1998). “Crystal structures of pyrazolo[1,5-a]pyrimidine derivatives solved from powder diffraction data,” Z. Kristallogr. 213, 477482.CrossRefGoogle Scholar
Dewar, M. J. S., Zoebisch, E. G., Healy, E. F., and Stewart, J. J. P. (1985). “AM1: a new general purpose quantum mechanical molecular model,” J. Am. Chem. Soc. 107, 39023909.CrossRefGoogle Scholar
Dollase, W. A. (1986). “Correction of intensities for preferred orientation in powder diffractometry: Application of the March model,” J. Appl. Crystallogr. 19, 267272.CrossRefGoogle Scholar
Goubitz, K., Sonneveld, E. J., Chernyshev, V. V., Yatsenko, A. V., Zhukov, S. G., Reiss, C. A., and Schenk, H. (1999). “Ab initio crystal structure determination of a series of benzene derivatives from powder data,” Z. Kristallogr. 214(in press).Google Scholar
Klamt, A., and Schüürmann, G. (1993). “COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient,” J. Chem. Soc., Perkin Trans. 2, 799–805.CrossRefGoogle Scholar
Makarov, V. A., Schmidtke, M., and Granik, V. G. (1998). “New pyrazolo[1,5-a]pyrimidines as potential antiviral agents,” XVth International Symposium on Medicinal Chemistry, Book of Abstracts, Edinburgh, England, p. 56.Google Scholar
Makarov, V. A., Solovieva, N. P., Koloda, O. B., Chernyshev, V. V., Sonneveld, E. J., and Granik, V. G. (1999). “Synthesis and structure of 3-carbomethoxypyrazolo[1,5-a]pyrimidines,” Chem. Heterocycl. Comp. (submitted in 1998).Google Scholar
Masciocchi, N., Ragaini, F., Cenini, S., and Sironi, A. (1998). “Ab initio XRPD structure determination of organometallic compounds: the case of Pd(Phen)(C(O)N(Me)OC(O)), a model intermediate in the palladium-phenanthroline-catalyzed reductive carbonylation of aromatic nitro compounds,” Organometallics 17, 10521057.CrossRefGoogle Scholar
Popa, N. C. (1998). “The (hkl) dependence of diffraction-line broadening caused by strain and size for all Laue groups in Rietveld refinement,” J. Appl. Crystallogr. 31, 176180.CrossRefGoogle Scholar
Sheldrick, G. M. (1993). SHELXL93. Program for the refinement of crystal structures. University of Göttingen, Germany.Google Scholar
Spek, A. L. (1992). PLUTON-92. Program for the viewing, analysis and presentation of molecular structures. University of Utrecht, The Netherlands.Google Scholar
Stewart, J. J. P. (1993). MOPAC 7.2. QCPE Program No. 455.Google Scholar
Toraya, H. (1986). “Whole-powder-pattern fitting without reference to a structural model: Application to X-ray powder diffractometer data,” J. Appl. Crystallogr. 19, 440447.CrossRefGoogle Scholar
Visser, J. W. (1969). “A fully automatic program for finding the unit cell from powder data,” J. Appl. Crystallogr. 2, 8995.CrossRefGoogle Scholar
Visser, J. W. (1986). “JCPDS—International Centre for Diffraction Data task group on cell parameter refinement,” Powder Diffr. 1, 6676.Google Scholar
Yatsenko, A. V., Chernyshev, V. V., and Schenk, H. (1999a). “2-Aminophenalenone: crystal data and molecular packing,” Powder Diffr. 14, 4244.CrossRefGoogle Scholar
Yatsenko, A. V., Chernyshev, V. V., Zhukov, S. G., Sonneveld, E. J., and Schenk, H. (1999b). “Crystal structure of 3-methoxybenzanthrone from X-ray powder diffraction,” Powder Diffr. 14 (in press).CrossRefGoogle Scholar
Young, R. A., and Wiles, D. B. (1982). “Profile shape functions in Rietveld refinements,” J. Appl. Crystallogr. 15, 430438.CrossRefGoogle Scholar
Zlokazov, V. B., and Chernyshev, V. V. (1992). “MRIA—a program for a full profile analysis of powder multiphase neutron-diffraction time-of-flight (direct and Fourier) spectra,” J. Appl. Crystallogr. 25, 447451.CrossRefGoogle Scholar