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Computing for Optimized Biological Microscopy Data Processing and Analysis at The Rosalind Franklin Institute

Published online by Cambridge University Press:  22 July 2022

Luís M. A. Perdigão ,
Neville B.-y Yee ,
Elaine M. L. Ho ,
Avery H. Pennington ,
Oliver N.F. King ,
Michele C. Darrow  and
Mark Basham
Luís M. A. Perdigão*
Affiliation:
The Rosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom
Neville B.-y Yee
Affiliation:
The Rosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom
Elaine M. L. Ho
Affiliation:
The Rosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom
Avery H. Pennington
Affiliation:
Diamond Light Source, Harwell Campus, Didcot, United Kingdom
Oliver N.F. King
Affiliation:
Diamond Light Source, Harwell Campus, Didcot, United Kingdom
Michele C. Darrow
Affiliation:
The Rosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom
Mark Basham
Affiliation:
The Rosalind Franklin Institute, Harwell Campus, Didcot, United Kingdom
*
*Corresponding author: luis.perdigao@rfi.ac.uk

Abstract

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Type
3D Volume Electron Microscopy in Biology Research
Information
Microscopy and Microanalysis , Volume 28 , Supplement S1 , August 2022 , pp. 1462 - 1464
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Copyright
Copyright © Microscopy Society of America 2022

References

Perdigao, LMA et al. , manuscript in preparation.Google Scholar
Red lionfish, (RL) deconvolution. Rosalind Franklin Institute, https://github.com/rosalindfranklininstitute/RedLionfish (accessed: Feb. 16, 2022).Google Scholar
napari contributors (2019). napari: a multi-dimensional image viewer for python. doi:10.5281/zenodo.3555620.CrossRefGoogle Scholar
Arnold, J, et al. , Biophysical Journal, 110, 4 (2016) p. 860, doi: 10.1016/j.bpj.2015.10.053.CrossRefGoogle Scholar
Yee, Neville B.-y., Ho, E and Basham, M, manuscript in preparation.Google Scholar
Ot2Rec. Rosalind Franklin Institute, https://github.com/rosalindfranklininstitute/Ot2Rec (accessed: Feb. 16, 2022).Google Scholar
Zheng, S et al. , Nat Methods 14, 4, 4 (2017), p. 331. doi: 10.1038/nmeth.4193.CrossRefGoogle Scholar
Rohou, A, Grigorieff, N, J Struct Biol. 192(2) (2015) p. 216-21. doi: 10.1016/j.jsb.2015.08.008.CrossRefGoogle Scholar
Kremer, JR, Mastronarde, DN and McIntosh, JR, J. Struct. Biol. 116 (1996) p. 71. doi: 10.1006/jsbi.1996.0013.CrossRefGoogle Scholar
Wadeson, N and Basham, M, arXiv preprint (2016) arXiv:1610.08015.Google Scholar
Pennington, A. et al. , submitted.Google Scholar
Darrow, M. C. et al. , JoVE (Journal of Visualized Experiments), 126 (2017) p. e56162. doi: 10.3791/56162.Google Scholar
SuRVoS2. Diamond Light Source, https://github.com/DiamondLightSource/SuRVoS2 (accessed: Feb. 16, 2022).Google Scholar
Tun, WM et al. , Journal of The Royal Society Interface, 18, 179 (2022) p. 20210140. doi: 10.1098/rsif.2021.0140.CrossRefGoogle Scholar
King, ONF et al. , manuscript in preparation.Google Scholar
Ronneberger, O, Fischer, P and Brox, T, in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015, Navab, N, Hornegger, J, Wells, WM, Frangi, AF, Eds. (Springer International Publishing, Cham, vol. 9351 of Lecture Notes in Computer Science (2015) p. 234. doi: 10.1007/978-3-319-24574-4_28.Google Scholar