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7 - Protein Folding and Biogenesis

Mary Luckey
Affiliation:
San Francisco State University
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Summary

With an appreciation of the structural characteristics and functional diversity of membrane proteins, the question of their biogenesis arises. How does a nascent peptide, a chain of amino acids emerging from the ribosome, fold into a three-dimensional structure and insert into the membrane bilayer? Evidence suggests that folding and insertion are coupled processes in cells. However, given the nature and complexity of these processes, different approaches are taken to study folding and insertion in vitro.

Protein folding studies give information about the thermodynamic forces that drive folding and about its kinetic pathways, identifying transient but detectable intermediates. Recently these techniques have been applied to purified membrane proteins of both the α-helical and β-barrel classes. While the folding mechanisms determined by in vitro studies of membrane proteins may differ significantly from mechanisms of their biogenesis in the cell, these studies do provide insights into the necessary steps, as well as their stability and their lipid requirements. Thermodynamic analysis of the in vitro folding process gives insights into the evolution of the complex machinery used to assemble membrane proteins in cells. Finally, the in vitro studies provide valuable practical information on refolding techniques that are applicable to other membrane proteins that have been denatured during purification.

Insertion of nascent proteins into the membrane involves their translocation out of the cytoplasm by the same export machinery used to secrete proteins.

Type
Chapter
Information
Membrane Structural Biology
With Biochemical and Biophysical Foundations
, pp. 160 - 190
Publisher: Cambridge University Press
Print publication year: 2008

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References

Engelman, D. M., and Steitz, T. A., The spontaneous insertion of proteins into and across membranes: the helical hairpin hypothesis. Cell. 1981, 23:411–422.CrossRefGoogle ScholarPubMed
Gruner, S. M., Instrinsic curvature hypothesis for biomembrane lipid composition. Proc Natl Acad Sci U S A. 1985, 82:3665–3669.CrossRefGoogle Scholar
Randall, L. L., Translocation of domains of nascent periplasmic proteins across the cytoplasmic membrane is independent of elongation. Cell. 33:231–240.CrossRef
Hartl, F. U., Lecker, S., Schiebel, E., Hendrick, J. P., and Wickner, W., The binding cascade of SecB to SecA to SecY/E mediates preprotein targeting to the E. coli plasma membrane. Cell. 1990, 63:269–279.CrossRefGoogle ScholarPubMed
Simon, S. M., and Blobel, G., A protein-conducting channel in the endoplasmic reticulum. Cell. 1991, 65:371–380.CrossRefGoogle ScholarPubMed
Heinrich, S. U., Mothes, W., Brunner, J., and Rapoport, T. A., The Sec61p complex mediates the integration of a membrane protein by allowing lipid partitioning of the transmembrane domain. Cell. 2000, 102:233–244.CrossRefGoogle ScholarPubMed
Booth, P. J., and Curran, A. R., Membrane protein folding. Curr Opin Struct Biol. 1999, 9:115–121.CrossRefGoogle ScholarPubMed
Popot, J.-L., and Engelman, D. M., Helical membrane protein folding, stability and evolution. Annu Rev Biochem. 2000, 69:881–922.CrossRefGoogle ScholarPubMed
White, S. H., and Wimley, W. C., Membrane protein folding and stability: physical principles. Annu Rev Biophys Biomol Struct. 1999, 28:319–365.CrossRefGoogle ScholarPubMed
Bowie, J., Solving the membrane protein folding problem. Nature. 2005, 438:581–589.CrossRefGoogle ScholarPubMed
Sanders, C. R., and Myers, J. K., Disease-related misassembly of membrane proteins. Annu Rev Biophys Biomol Struct. 2004, 33:25–51.CrossRefGoogle ScholarPubMed
Veenendaal, A. K. J., Does, C., and Driessen, A. J. M., The protein-conducting channel SecYEG. Biochim Biophys Acta. 2004, 1694:81–95.CrossRefGoogle ScholarPubMed
Luirink, J., Heijne, G., Houben, E., and Gier, J.-W., Biogenesis of inner membrane proteins in Escherichia coli. Annu Rev Microbiol. 2005, 59:329–355.CrossRefGoogle ScholarPubMed
Luirink, J., and Sinning, I., SRP-mediated protein targeting: structure and function revealed. Biochim Biophys Acta. 2004, 1694:17–35.Google Scholar
Dalbey, R. E., and Chen, M., Sec-translocase mediated membrane protein biogenesis. Biochim Biophys Acta. 2004, 1694:37–53.CrossRefGoogle ScholarPubMed
White, S. H., and Heijne, G., The machinery of membrane protein assembly. Curr Opin Struct Biol. 2004, 14:397–404.CrossRefGoogle ScholarPubMed
White, S. H., and Heijne, G., Transmembrane helices before, during and after insertion. Curr Opin Struct Biol. 2005, 15:378–386.CrossRefGoogle ScholarPubMed
Ott, C. M., and Lingappa, V. R., Integral membrane protein biosynthesis. J Cell Science. 2002, 115:2003–2009.Google ScholarPubMed
Higy, M., Junne, T., and Spiess, M., Topogenesis of membrane proteins at the endoplasmic reticulum. Biochemistry. 2004, 43:12716–12722.CrossRefGoogle ScholarPubMed
Pfanner, N., and Wiedemann, N., Mitochondrial protein import: two membranes, three translocatases. Curr Opin Cell Biol. 2002, 14:400–411.CrossRefGoogle Scholar
Endo, T., Yamamoto, H., and Esaki, M., Functional cooperation and separation of translocators in protein import into mitochondria, the double-membrane bounded organelles. J Cell Science. 2003, 116:3259–3267.CrossRefGoogle ScholarPubMed
Engelman, D. M., and Steitz, T. A., The spontaneous insertion of proteins into and across membranes: the helical hairpin hypothesis. Cell. 1981, 23:411–422.CrossRefGoogle ScholarPubMed
Gruner, S. M., Instrinsic curvature hypothesis for biomembrane lipid composition. Proc Natl Acad Sci U S A. 1985, 82:3665–3669.CrossRefGoogle Scholar
Randall, L. L., Translocation of domains of nascent periplasmic proteins across the cytoplasmic membrane is independent of elongation. Cell. 33:231–240.CrossRef
Hartl, F. U., Lecker, S., Schiebel, E., Hendrick, J. P., and Wickner, W., The binding cascade of SecB to SecA to SecY/E mediates preprotein targeting to the E. coli plasma membrane. Cell. 1990, 63:269–279.CrossRefGoogle ScholarPubMed
Simon, S. M., and Blobel, G., A protein-conducting channel in the endoplasmic reticulum. Cell. 1991, 65:371–380.CrossRefGoogle ScholarPubMed
Heinrich, S. U., Mothes, W., Brunner, J., and Rapoport, T. A., The Sec61p complex mediates the integration of a membrane protein by allowing lipid partitioning of the transmembrane domain. Cell. 2000, 102:233–244.CrossRefGoogle ScholarPubMed
Booth, P. J., and Curran, A. R., Membrane protein folding. Curr Opin Struct Biol. 1999, 9:115–121.CrossRefGoogle ScholarPubMed
Popot, J.-L., and Engelman, D. M., Helical membrane protein folding, stability and evolution. Annu Rev Biochem. 2000, 69:881–922.CrossRefGoogle ScholarPubMed
White, S. H., and Wimley, W. C., Membrane protein folding and stability: physical principles. Annu Rev Biophys Biomol Struct. 1999, 28:319–365.CrossRefGoogle ScholarPubMed
Bowie, J., Solving the membrane protein folding problem. Nature. 2005, 438:581–589.CrossRefGoogle ScholarPubMed
Sanders, C. R., and Myers, J. K., Disease-related misassembly of membrane proteins. Annu Rev Biophys Biomol Struct. 2004, 33:25–51.CrossRefGoogle ScholarPubMed
Veenendaal, A. K. J., Does, C., and Driessen, A. J. M., The protein-conducting channel SecYEG. Biochim Biophys Acta. 2004, 1694:81–95.CrossRefGoogle ScholarPubMed
Luirink, J., Heijne, G., Houben, E., and Gier, J.-W., Biogenesis of inner membrane proteins in Escherichia coli. Annu Rev Microbiol. 2005, 59:329–355.CrossRefGoogle ScholarPubMed
Luirink, J., and Sinning, I., SRP-mediated protein targeting: structure and function revealed. Biochim Biophys Acta. 2004, 1694:17–35.Google Scholar
Dalbey, R. E., and Chen, M., Sec-translocase mediated membrane protein biogenesis. Biochim Biophys Acta. 2004, 1694:37–53.CrossRefGoogle ScholarPubMed
White, S. H., and Heijne, G., The machinery of membrane protein assembly. Curr Opin Struct Biol. 2004, 14:397–404.CrossRefGoogle ScholarPubMed
White, S. H., and Heijne, G., Transmembrane helices before, during and after insertion. Curr Opin Struct Biol. 2005, 15:378–386.CrossRefGoogle ScholarPubMed
Ott, C. M., and Lingappa, V. R., Integral membrane protein biosynthesis. J Cell Science. 2002, 115:2003–2009.Google ScholarPubMed
Higy, M., Junne, T., and Spiess, M., Topogenesis of membrane proteins at the endoplasmic reticulum. Biochemistry. 2004, 43:12716–12722.CrossRefGoogle ScholarPubMed
Pfanner, N., and Wiedemann, N., Mitochondrial protein import: two membranes, three translocatases. Curr Opin Cell Biol. 2002, 14:400–411.CrossRefGoogle Scholar
Endo, T., Yamamoto, H., and Esaki, M., Functional cooperation and separation of translocators in protein import into mitochondria, the double-membrane bounded organelles. J Cell Science. 2003, 116:3259–3267.CrossRefGoogle ScholarPubMed

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