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7 - Conclusion

Published online by Cambridge University Press:  18 December 2014

Gonzalo Navarro
Affiliation:
Universidad de Chile
Mathieu Raffinot
Affiliation:
Centre National de la Recherche Scientifique (CNRS), Paris
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Summary

Before finishing, we would like to give some extra material that might be of interest.

First, we believe that it is extremely useful to know of freely available tools for on-line text searching, so we cover the existing software of this kind we are aware of.

Second, we give pointers to other books, journals, conferences, and online resources one may want to read to enter deeper into the area of text searching. This is also of interest to readers with a specific algorithmic problem not addressed in this book and not solved by the available software.

Finally, we include a section with problems related to combinatorial pattern matching. The section aims at briefing over the different extensions to the basic text searching problem, explaining the main concepts and existing results, and pointing to more comprehensive material covering them.

Up to date information and errata related to this book will be available at http://www.dcc.uchile.cl/~gnavarro/FPMbook.

Available software

We present in this section a sample of freely available software for on-line pattern matching.

7.1.1 Gnu Grep

What it is GNU (http://www.gnu.org) is an organization devoted to the development of free software. One of its products, Grep, permits fast searching of simple strings, multiple strings, and regular expressions in a set of files. Approximate searching is not supported. Gnu Grep is twice as fast as the classical Unix Grep.

Grep reports the lines in the file that contain matches. However, there are many configuration options that permit reporting the lines that do not match, the number of lines that match, whole files containing matches, and so on. The software provides a very powerful syntax that includes operators that go beyond regular expressions.

Type
Chapter
Information
Flexible Pattern Matching in Strings
Practical On-Line Search Algorithms for Texts and Biological Sequences
, pp. 185 - 206
Publisher: Cambridge University Press
Print publication year: 2002

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  • Conclusion
  • Gonzalo Navarro, Universidad de Chile, Mathieu Raffinot, Centre National de la Recherche Scientifique (CNRS), Paris
  • Book: Flexible Pattern Matching in Strings
  • Online publication: 18 December 2014
  • Chapter DOI: https://doi.org/10.1017/CBO9781316135228.007
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  • Conclusion
  • Gonzalo Navarro, Universidad de Chile, Mathieu Raffinot, Centre National de la Recherche Scientifique (CNRS), Paris
  • Book: Flexible Pattern Matching in Strings
  • Online publication: 18 December 2014
  • Chapter DOI: https://doi.org/10.1017/CBO9781316135228.007
Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

  • Conclusion
  • Gonzalo Navarro, Universidad de Chile, Mathieu Raffinot, Centre National de la Recherche Scientifique (CNRS), Paris
  • Book: Flexible Pattern Matching in Strings
  • Online publication: 18 December 2014
  • Chapter DOI: https://doi.org/10.1017/CBO9781316135228.007
Available formats
×