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13 - Multiple-sequence alignments

Published online by Cambridge University Press:  05 February 2015

Tim J. Stevens  and
Wayne Boucher
Tim J. Stevens
Affiliation:
MRC Laboratory of Molecular Biology, Cambridge
Wayne Boucher
Affiliation:
University of Cambridge
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Python Programming for Biology
Bioinformatics and Beyond
 , pp. 232 - 243
Publisher: Cambridge University Press
Print publication year: 2015

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References

Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389–3402.CrossRefGoogle ScholarPubMed
Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22(22): 4673–4680.CrossRefGoogle ScholarPubMed
Edgar, R.C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32(5): 1792–1797.CrossRefGoogle ScholarPubMed
Notredame, C., Higgins, D.G., and Heringa, J. (2000). T-Coffee: a novel method for fast and accurate multiple sequence alignment. Journal of Molecular Biology 302(1): 205–217.CrossRefGoogle ScholarPubMed

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