Seed is a fertilized mature ovule, which possesses an embryonic plant. When the dry, mature seeds are subjected to imbibition, they release a wide range of organic substances, which include low molecular weight carbonyl compounds (gases and volatiles) and water-soluble organic substances (enzymes and polysaccharides). The volatile organic compounds (VOCs) are molecules of low molecular weight (300 g mol−1) and high vapour pressure (0.01 kPa at 20°C) and include diverse chemical compounds. The nature and emission kinetics of volatiles produced from seeds vary, depending on the moisture content of the seeds. Orthodox seeds stored at ‘low seed moisture content’ undergo seed deterioration, predominantly due to lipid peroxidation, initiated by autoxidation or enzymatic oxidation of unsaturated or polyunsaturated fatty acids. This peroxidation leads to emission of volatile compounds. The quantity of VOCs emitted is positively correlated with the advancement of seed deterioration. With respect to the seed germination process, exposure of seeds to ‘high moisture conditions’ leads to increased respiration, triggers glycolysis and mobilization of storage reserves, resulting in the emission of volatile metabolic products. The quantity of VOCs emitted on commencement of metabolic activity in germinating seeds depends on (1) vigour status and (2) amount of storage reserves. Since it has been established that there is a significant difference between high and low vigour seeds with respect to quantity and profile of VOCs emitted, there is great potential for utilizing the VOC profile to obtain a quick and reproducible test of vigour status of crop seeds. In order to harness the VOC profile for quick assessment of vigour status of seeds, research has to be taken up to develop standard protocols for fingerprinting of VOCs for the purpose of seed vigour assessment and to fix the standard volatile biomarker(s) specific to crop and vigour status of seeds.

For endozoochorous species, the quality component of seed dispersal effectiveness depends in part on the treatment seeds receive in the animal's gut. Covering a variety of taxa, diet, digestion system and body size of Prosopis flexuosa seed dispersers, we analysed differences among species in (1) mean retention time of ingested seeds, (2) recovery of viable seeds, (3) seed germination in comparison with seeds collected from trees and (4) germination of seeds after two different periods of retention in the gut. Feeding experiments were conducted with captive individuals of Dolichotis patagonum, Lycalopex gymnocercus, Rhea americana, Chelonoidis chilensis and Lama guanicoe. On the first day, we provided them with fruits containing controlled amounts of seed, and on the subsequent days, we collected faeces in order to recover seeds. We performed germination and viability tests on seeds coming from faeces and collected from trees. The results showed differences among species in the mean retention time of seeds. Chelonoidis chilensis had the longest mean retention time, but its effect on seed recovery and germination was similar to that of the other species, except for L. guanicoe, which showed the lowest seed recovery. When scarification and promotion of seed germination were considered, herbivorous mammals and tortoises (L. guanicoe, D. patagonum and C. chilensis) were the ones increasing germinability, whereas R. americana and L. gymnocercus did not significantly increase final seed germination percentage, which was similar to that for seeds collected from trees. P. flexuosa seeds receive a variety of treatments from endozoochorous dispersers, which might result in an overall fitness benefit for a plant living in unpredictable environments.

Only a few studies have been performed on seed germination of perennial ephemeral species native to the cold deserts of central Asia. We hypothesized that seeds of the cold desert perennial ephemeral Leontice incerta exhibit versatility in the timing of germination, that is, having the capacity to germinate at any time in summer, autumn and next spring. At dispersal in late May, only about 30% of the seeds could germinate; thus, a high percentage of the seeds was dormant. Seeds had a fully developed embryo, and dry storage, cold stratification, warm stratification and gibberellin promoted germination; we concluded that they have non-deep physiological dormancy. Seeds buried under natural conditions during summer germinated to 57–86% in autumn (late October) when exhumed and incubated at 5/2–25/15°C. However, seeds were sown in soil exposed to natural temperature and (low) precipitation did not germinate until next spring when the soil was moist. Thus, like various cold desert annuals, seeds of the perennial L. incerta can germinate in summer, autumn and next spring, depending on the availability of soil moisture (rainfall). Rainfall in cold deserts can play an important role in shaping seed germination traits of desert plants.

Fire is a frequent disturbance in the Cerrado and is one of the major factors affecting vegetation structure and diversity. Fire events open gaps within the herbaceous layer and increase temperature fluctuation in the soil surface. In addition to being an important environmental filter for germination, fire is a germination cue for species with physiological dormancy. This study aimed to evaluate the germination of native grasses, using daily temperature fluctuations and heat shock to overcome physiological dormancy in native grasses. We also evaluated seed longevity after dispersal for some species. We conducted the daily temperature fluctuation experiments on seeds of ten native grass species, which were collected and then placed in germination chambers simulating thermal fluctuation throughout the day (19–55°C). We also subjected seeds to different heat-shock treatments: 100°C for 1 min, 100°C for 3 min and 200°C for 1 min. To determine seed longevity, we stored seeds for 6 and 12 months after collection and then set them to germinate (27°C, 12/12 h light). Non-germinated seeds from all experiments were tested for viability. Most species had low longevity and germination percentages. Those that had physiological dormancy were stimulated to germinate when exposed to temperature fluctuations. One species resisted temperatures up to 200°C. For all other species, neither treatment affected germination percentages. Our results indicate the importance of these environmental filters for seedling recruitment of these species, considering the low longevity and the presence of physiological dormancy.

In the tetraploid Tulipa sylvestris we found larger and heavier seeds that germinated around 28 days earlier than those of the diploid ancestor Tulipa pumila. The faster germination of the tetraploid species is linked to the faster growth of embryos, which reached their final length much earlier than the embryos of the diploid species. In conclusion, we argue a cautionary approach when dealing with comparative studies on ploidy level and germination to avoid misinterpretation of results when set against the natural conditions.

We hypothesized that Strychnos nux-vomica and Strychnos potatorum in seasonal tropical ecosystems have dormant desiccation-tolerant seeds, while those of Strychnos benthamii growing in aseasonal wet habitats have non-dormant desiccation-sensitive seeds. Germination, imbibition, the effect of gibberellic acid on germination and changes in the embryo to seed length ratio (E:S) during incubation were determined for the three species. Seed storage behaviour was identified with the hundred seed test. Time taken for epicotyl emergence was recorded. Radicle emergence of S. nux-vomica, S. potatorum and S. benthamii at 25°C under light/dark conditions (12/12 h) was completed within 76, 49 and 11 d, respectively. S. nux-vomica and S. potatorum seeds incubated on GA3 germinated to a higher percentage than non-treated seeds. E:S of S. nux-vomica, S. potatorum and S. benthamii had increased by 38.2, 34.5 and 25.5%, respectively, at radicle emergence. Shoot emergence of S. nux-vomica, S. potatorum and S. benthamii was observed after 76, 74 and 45 d from radicle emergence, respectively. Thus, it can be concluded that the seeds of all three species have epicotyl morphophysiological dormancy. Hundred seed tests revealed that S. nux-vomica and S. potatorum seeds were desiccation-tolerant, while those of S. benthamii were desiccation-sensitive. Our study showed that species from seasonal habitats (S. nux-vomica and S. potatorum) have desiccation-tolerant morphophysiologically dormant seeds, while those from an aseasonal habitat (S. benthamii) have desiccation-sensitive morphophysiologically dormant seeds, revealing that their dormancy and desiccation tolerance behaviour are adaptations to their environment.

Astragalus is the largest genus of seed plants with 3000 or more species that occurs naturally on several continents. The genus has some use as a forage and medicine and in industry, and many of the species are rare endemics threatened with extinction. The seeds are reported to be dormant at maturity, and various treatments have been used in an attempt to germinate them. Our primary aim was to determine via a meta-analysis the most effective way(s) to break dormancy in seeds of this species-rich genus. Mechanical and chemical (conc. sulphuric acid) scarification were by far the best of 12 treatments for breaking seed dormancy of the 40 species included in our meta-analysis, whereas prechilling, gibberellin and smoke were ineffective. These results along with those of imbibition tests confirm that seeds of the examined Astragalus species have physical dormancy (PY). Further, PY in these 40 species and (its documented occurrence) in 118 species that could not be included in our meta-analysis transcends climatic and geographic boundaries, edaphic conditions, life cycle/life form types and infrageneric phylogeny. Thus, it seems likely that most species of Astragalus have PY. However, in addition to PY, physiological dormancy (PD), that is, combinational dormancy (PY + PD), has been reported in a few species of Astragalus. This study should be useful to both basic and applied scientists who want to germinate seeds of Astragalus.

Recent evidence points to relationships between intra-specific seed mass variation and viability loss in response to ageing stress. However, little is known about how seed quality may change temporally in response to such stress. Here we examined seed–water relations of mass-separated Rudbeckia mollis seeds to better understand physiological status among mass classes. We then evaluated seed viability and vigour changes in response to various storage conditions or post-storage vigour tests (a 41°C, 75% RH stress for up to 45 d). We found similar pre-storage physiology among mass classes. However, seeds of lower mass deteriorated up to 1.5-fold faster than heavier seeds under certain conditions. Stressing seeds after storage resulted in distinct vigour differences among mass classes. For example, vigour in lower mass seeds tended to decline more compared to heavier seeds following storage in a climate-controlled room. Alternatively, vigour loss varied among mass classes following storage in a non-climate-controlled shed. Our results highlight the importance of distinguishing between pre-sowing storage and post-storage vigour effects when quantifying relative levels of viability loss among seeds of different mass. Furthermore, differential responses to storage and ageing stress among mass classes may have important implications for post-storage regeneration and subsequent population dynamics.

The prediction of seed longevity (P50) is traditionally performed by the use of the Probit model. However, due to the fact that the survival data are of binary origin (0,1), the fit of the model can be compromised by the non-normality of the residues. Consequently, this leads to prediction losses, despite the data being partially smoothed by Probit and Logit models. A possibility to reduce the effect of non-normality of the data would be to apply the principles of the central limit theorem, which states that non-normal residues tend to be normal as the n sample is increased. The Logit and Probit models differ in their normal and logistic distribution. Therefore, we developed a new estimation procedure by using a small increase of the n sample and tested it in the Probit and Logit functions to improve the prediction of P50. The results showed that the calculation of P50 by increasing the n samples from 4 to 6 replicates improved the index of correctness of the prediction. The Logit model presented better performance when compared with the Probit model, indicating that the estimation of P50 is more adequate when the adjustment of the data is performed by the Logit function.

Using seeds to restore natural ecosystems has a greater chance of success if the seeds used are ready to germinate given appropriate environmental conditions. For Australian native Poaceae species, seed quality and dormancy can impose constraints on restoration success. In this study, germination biology of three Australian native Poaceae species, such as Cymbopogon refractus, Capillipedium spicigerum and Bothriochloa bladhii, was investigated. The seeds were exposed to different germination-enhancing chemicals (GECs, namely smoke water (SW), potassium nitrate (KNO3) or a combination (SW + KNO3)) and treated with three different seed enhancement technologies (SETs, namely seed priming, seed coating or seed cookies) then sown into two contrasting soil types (sodosol or black vertisol). Laboratory germination percentages achieved were <50% for all species, limited by dormant seeds. Incorporating GECs together with seed priming or seed coating treatment significantly increased seedling emergence rates and promoted earlier emergence as compared to the untreated control. For C. refractus and C. spicigerum, priming and/or coating with KNO3 + SW had the highest cumulative emergence. For B. bladhii, total seedling emergence was the highest (36% in both soils) for primed seeds with KNO3. Seedling emergence from seed cookies was low in all three species (<15%). Generally, soil type did not influence emergence rates for either GEC or SET. Understanding the environmental requirements needed for seed germination, together with an appropriate pre-treatment before sowing, can speed up seedling emergence and increase total emergence when using native Poaceae species for seed-based restoration.

Vitamin E is known to scavenge lipid peroxy radicals and has a purported role in preventing seed deterioration during storage. In our previous studies using 20 rice varieties from different variety groups, the specific ratio of vitamin E homologues rather than total vitamin E content was associated with seed longevity. To validate this result, we extended the experiment to a rice panel composed of 185 Aus (semi-wild rice) varieties. Seed longevity values were determined through storage experiments at 45°C and 10.9% seed moisture content (MC). Eight types of vitamin E homologues (α-, β-, γ- and δ-tocopherol/tocotrienol) were quantified by ultra-performance liquid chromatography. The theoretical initial viability in NED, Ki, was positively correlated with γ- and δ-tocopherols and negatively correlated with α-tocotrienol. The time for viability to fall to 50% during storage at elevated temperature and relative humidity, p50, was positively correlated with δ-tocopherol. The harvest MC was negatively correlated with all seed longevity traits. Taking this factor into account in a genome-wide association (GWA) analysis, we were able to correct false positives. A consistent major peak on chromosome 4 associated with −σ−1 was detected with a mixed linear analysis. Based on rice genome annotation and gene network ontology databases, we suggest that RNA modification, oxidation–reduction, protein–protein interactions and abscisic acid signal transduction play roles in seed longevity extension of Aus rice. Although major GWA regions were not overlapped across traits, three genetic markers, on chromosomes 1, 3 and 4, were associated with both δ-tocopherol and Ki and two markers on chromosome 1 and 8 were associated with both δ-tocopherol and p50.

Desiccation-tolerant (DT) plant germplasm (i.e. seeds, pollen and spores) survive drying to low moisture contents, when cytoplasm solidifies, forming a glass, and chemical reactions are slowed. DT germplasm may survive for long periods in this state, though inter-specific and intra-specific variation occurs and is not currently explained. Such variability has consequences for agriculture, forestry and biodiversity conservation. Longevity was previously considered in the context of morphological features, cellular constituents or habitat characteristics. We suggest, however, that a biophysical perspective, which considers the molecular organization – or structure – within dried cytoplasm, can provide a more integrated understanding of the fundamental mechanisms that control ageing rates, hence the variation of longevity among species and cell types. Based on biochemical composition and physical–chemical properties of dried materials, we explore three types of the interplay between structural conformations of dried cytoplasm and ageing: (1) cells that lack chlorophyll and contain few storage lipids may exhibit long shelf life, with ageing probably occurring through slow autoxidative processes within the glassy matrix as it relaxes; (2) cells with active chlorophyll may die quickly, possibly because they are prone to oxidative stress promoted by the photosynthetic pigments in the absence of metabolic water and (3) cells that lack chloroplasts but contain high storage lipids may die quickly during storage at −20°C, possibly because lipids crystallize and destabilize the glassy matrix. Understanding the complex variation in structural conformation in space and time may help to design strategies that increase longevity in germplasm with generally poor shelf life.

Seed lot heterogeneity is often evaluated through the range between germination percentages of four seed samples, considering normal and binomial approximations for calculating the tolerated range (S). In this paper, an exact test for the germination count range (R) is derived based on the hypergeometric and the binomial probability model for germination count. Through Monte Carlo simulations, the empirical distribution of R is built to evaluate the quantiles of the exact distributions. Moreover, a power analysis is performed by simulation. Sample size and germination rate effects are evaluated. In lots with a high germination rate, the proposed test based on the hypergeometric model is about 20% more powerful than the test based on the S-value. A table containing the critical values is presented and recommended to be used in off-range heterogeneity testing.

Seed dispersal has key implications for community dynamics and restoration ecology. However, estimating seed rain (the number and diversity of seeds arriving in a given area) is challenging, and the lack of standardization in measurement prevents cross-site comparisons. Seed trap effectiveness and accuracy of seed sorting methods are key components of seed rain estimates in need of standardization. We propose and describe a standardized protocol for evaluating the effectiveness of two seed trap types (sticky and funnel traps) and the accuracy of a seed sorting method. We used widely available seeds (arugula, quinoa, sesame and sunflower) to produce a gradient of seed size, weight and colour. Proof-of-concept was tested in a tropical grassland, where traps were set for 30 days. Our results suggest that we underestimate dispersal of seeds with less than 2 mm width that can be easily mistaken for debris and soil particles or that fail to adhere to sticky traps. Seeds on sticky traps may be more vulnerable to removal by wind and rain, whereas seeds in funnel traps are more susceptible to decay. We found no evidence of observer bias on seed sorting for funnel trap samples. However, accuracy on seed sorting for funnel trap samples tended to decline for seeds with less than 2 mm width, suggesting a size-dependence in seed retrieval success. Our standardized protocol addressing trap effectiveness and seed sorting methods will increase the reliability of data obtained in seed rain studies and allow more reliable comparisons between datasets.

Interception by plant canopies during wind dispersal can affect the final destination of diaspores. However, how the interaction of wind speed, canopy type and diaspore attributes affects interception of diaspores by the plant canopy has rarely been studied. We investigated canopy interception for 29 species with different diaspore attributes, six canopy types and six wind speeds in controlled experiments in a wind tunnel. Shrub canopy interception of diaspores were controlled by wind speed and diaspore attributes, but the latter had a greater influence on canopy interception than the former. At low wind speed, diaspore wing loading had a large influence on canopy interception, whereas at high wind speed, diaspore projection area had a large influence. The chance of canopy interception at a particular wind speed was additionally affected by the type of canopy. This study increases our knowledge of the dispersal process, corrects the previous understanding of diaspore dispersal potential and improves the theoretical basis for predicting spatial pattern and dynamics of plant populations.

Inga vera subsp. affinis (Fabaceae) is a tree species native to riparian forests in Southeast Brazil and is key for the restoration of deforested areas. The species produce seeds that are highly recalcitrant. Extreme sensitivity to desiccation as well as vivipary are commonly observed in mature seeds, which also tend towards polyembryony. Past research has shown that typical strategies to store seeds are inapplicable to Inga vera as viability is completely lost when seeds are either dried to around 28% water content (wet basis) or stored at 5°C for a few weeks. Here, we examine the feasibility of storing the seeds under hydrated conditions but at reduced water potential. Freshly collected seeds were kept under conventional storage conditions (plastic bags in cold chamber, 5°C) and in polyethylene glycol (PEG) solutions (−1.6 and −2.4 MPa) at 10°C. Seed germination was assessed after various intervals of time, until all seeds had lost viability. Before storage, seeds attained 100% germination and produced an average of 1.8 normal seedlings per seed (due to polyembryony). Storage in PEG at −1.6 MPa maintained 90% germination (radicle protrusion) and one normal seedling per seed on average for more than 200 d. Osmotic storage likely slowed down metabolism within the seed and hence consumption of food reserves. The storage time achieved has practical applications for in situ restoration, but cannot address ex situ germplasm conservation. Extending shelf life for an additional 6 months allows tree nurseries to optimize the production of seedlings so that they can be planted during the wet season.

Hydrothermal time (HTT) models describe the time course of seed germination for a population of seeds under specific temperature and water potential conditions. The parameters of the HTT model are usually estimated using either a linear regression, non-linear least squares estimation or a generalized linear regression model. There are problems with these approaches, including loss of information, and censoring and lack of independence in the germination data. Model estimation may require optimization, and this can have a heavy computational burden. Here, we compare non-linear regression with survival and Bayesian methods, to estimate HTT models for germination of two clover species. All three methods estimated similar HTT model parameters with similar root mean squared errors. However, the Bayesian approach allowed (1) efficient estimation of model parameters without the need for computation-intensive methods and (2) easy comparison of HTT parameters for the two clover species. HTT models that accounted for a species effect were superior to those that did not. Inspection of credibility intervals and estimated posterior distributions for the Bayesian HTT model shows that it is credible that most HTT model parameters were different for the two clover species, and these differences were consistent with known biological differences between species in their germination behaviour.

Cultivated rice (Oryza sativa L.) was domesticated from the Asian wild species O. rufipogon. Compared with cultivated rice, wild rice has spikelets/seeds with long barbed awns. In order to evaluate the role of awns in wild rice, four seed groups with different awn lengths (full, half, quarter and no awns) were prepared, and the following seed dispersal movements were investigated under simulated natural conditions as observed in the tropical Asian habitat: (1) seed detachment from the parent plant; (2) falling angle of mature seed; (3) ability to slip into small spaces; (4) horizontal movement on the ground and (5) horizontal movement in water. As a result, awns were found to enhance the detachment of matured seeds from the panicles in the initial seed dispersal step. They regulated vertical orientation in the air, and the vertical form may enable seeds to squeeze to the ground. The awned seeds also showed advantages in horizontal movements on the ground and in the water. In most of the experiments, seeds with full awns showed the best performance for seed dispersal, suggesting that wild rice keeps long awns to survive under natural conditions. Since seed awning is dominantly controlled by wild functional alleles at several loci, wild rice may be able to prevent a drastic reduction of awn length.

Characterizing non-lethal damage within dry seeds may allow us to detect early signs of ageing and accurately predict longevity. We compared RNA degradation and viability loss in seeds exposed to stressful conditions to quantify relationships between degradation rates and stress intensity or duration. We subjected recently harvested (‘fresh’) ‘Williams 82’ soya bean seeds to moisture, temperature and oxidative stresses, and measured time to 50% viability (P50) and rate of RNA degradation, the former using standard germination assays and the latter using RNA Integrity Number (RIN). RIN values from fresh seeds were also compared with those from accessions of the same cultivar harvested in the 1980s and 1990s and stored in the refrigerator (5°C), freezer (−18°C) or in vapour above liquid nitrogen (−176°C). Rates of viability loss (P50−1) and RNA degradation (RIN⋅d−1) were highly correlated in soya bean seeds that were exposed to a broad range of temperatures [holding relative humidity (RH) constant at about 30%]. However, the correlation weakened when fresh seeds were maintained at high RH (holding temperature constant at 35°C) or exposed to oxidizing agents. Both P50−1 and RIN⋅d−1 parameters exhibited breaks in Arrhenius behaviour near 50°C, suggesting that constrained molecular mobility regulates degradation kinetics of dry systems. We conclude that the kinetics of ageing reactions at RH near 30% can be simulated by temperatures up to 50°C and that RNA degradation can indicate ageing prior to and independent of seed death.