Sponge-related research in Taiwan has primarily focused on natural product exploration. This research has, however, been hampered by a lack of fundamental work on sponge taxonomy and ecology. In the present study, subtidal sponges were photo-recorded in situ and collected by scuba diving at a depth range of 2–20 m from 2009 to 2012 in 16 different sites surrounding the Penghu Archipelago, Taiwan. Sponge samples were identified to the lowest taxonomic level based on skeletal morphology and spicules. A total of 53 species belonging to 24 families and 10 orders were identified in this study. The number of sponge species per site ranged from 0 to 24. The most widely distributed sponge species was Callyspongia (Euplacella) cf. communis (Carter, 1881) followed by Haliclona (Gellius) cymaeformis (Esper, 1794), and Aaptos suberitoides (Brøndsted, 1934). At one location, Chipeiyu, no sponges were observed. Non-metric multidimensional scaling (NMDS) ordination revealed relatively low similarity among most sampling sites. Large- and small-scale hydrological and habitat features are probably responsible for compositional variation of sponge assemblages among groups of sampling sites. Our richness analyses suggest that many more sponge species remain to be discovered in the Penghu Archipelago.

Fatty acids (FA) are a non-protein energy source and can act as trophic biomarkers in benthic food webs. We analysed the FA profiles of sea cucumber Apostichopus japonicus, comparing tissues of body wall, gut sediment and ovaries in two habitats. Rongcheng Bay: kelp raft cultivation area with high organic matter in sediment; Laoshan Bay: strong current with low sediment organic matter. The results showed that body wall and ovary tissues were rich in long chain polyunsaturated FA (LC-PUFA), which contributed ~31% to the FA dissimilarity between the two tissues. SIMPER (similarity percentages routine) results showed that C20:5ω3 (EPA), C18:1ω7, C20:4ω6 (AA), C16:0, C14:1 and C20:1ω11 contributed to dissimilarity between the body wall and ovary tissues, while 16:1ω7, 20:5ω3, C16:0, C18:1ω7, C18:0 and C14:1 contributed more to the dissimilarity of body wall tissues between the two habitats. FA biomarkers showed that sea cucumbers from the two habitats had different food sources, with brown kelp and vascular plants being the main food for sea cucumbers in Rongcheng and diatoms for those in Laoshan. To better understand differences in FA composition in sea cucumbers, more research is needed examining a wider diversity of tissue types and habitats.

Glass sponge reefs on the continental shelf of western Canada and south-east Alaska are considered stable deep-sea habitats that do not change significantly over time. Research cruises using a remotely operated vehicle equipped with accurate GPS positioning have allowed us to observe the same sponges at two reefs in the Strait of Georgia, British Columbia to document recruitment, growth and response to damage over time. Spermatocysts and putative embryos found in winter suggest annual, asynchronous reproduction. Juvenile sponges (2–10 cm in osculum diameter) in densities up to 1 m−2 were more concentrated near live sponges and sponge skeletons than away (Spearman rank correlations, P < 0.0001 for live cover and for skeletons), suggesting that recruitment occurs in particular regions using sponge skeletons as substrate. Most sponges showed no change in shape or size over 2–3 years, but some had died while others showed growth of 1–9 cm year−1. Deposition rates of reef-cementing sediments were 97 mm year−1 at Galiano Reef and 137 mm year−1 at Fraser Reef, but sediments eroded so that there was no net gain or loss over time. Sponges recovered within 1 year from small-scale damage that mimicked bites by fish or nudibranchs; however sponges did not recover from crushing of a large area (1.5 × 2 m2) even 3 years later. These observations and experiments show that while recruitment and growth of sponge reefs is more dynamic than previously thought, the reefs are not resilient in the face of larger-scale disturbances such as might be inflicted by trawling.

Levels of pollution, including contamination by toxic metals, in the Thames estuary reduced over the last four decades of the 20th century. This 2014 study investigates whether the declines in the bioavailabilities of trace metals (Ag, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, V, Zn) have continued in the 21st century, using a suite of littoral biomonitors also employed in 2001 – the brown seaweed Fucus vesiculosus, the strandline, talitrid amphipod Orchestia gammarellus and the estuarine barnacle Amphibalanus improvisus. Bioaccumulated concentrations represent relative measures of the total bioavailabilities of each metal to the biomonitor over a previous time period, and can be compared over space and over time. Trace metal bioavailabilities varied along the estuary, and, in general, fell between 2001 and 2014, a reflection of the continuing remediation of the Thames estuary from its severely polluted state in the middle of the 20th century.

This study characterized shell occupation by two species of hermit crabs and analysed the occurrence of ectosymbionts on their shells, in a comparative way. The hermit crabs Clibanarius antillensis and Calcinus tibicen were selected for this comparative study because of their abundance and wide distributions. Specimens were collected manually during spring low tides every 2 months, from February 2011 to January 2012 in north-eastern Brazil (03°S), and in south-eastern Brazil (23°S). The populations showed different patterns of shell occupation and ectosymbiont coverage. The plasticity of these ecological traits is discussed in a broad context and possibly correlated to habitat differences.

From September 2000 to September 2001 the concentration of chlorophyll a, and the abundance and composition of the phytoplanktonic community was studied in a neritic station of the Mallorca Channel (Western Mediterranean). Sampling was performed approximately every 12 days. Chlorophyll a concentration and phytoplankton abundance reached maxima of 1.79 μg L−l and 352 cells mL−1, respectively. It was a relatively productive period, as a result of the high convective mixing in winter and the prevalence of northern waters during most of the cycle. Phytoplankton proliferations (chlorophyll a concentration >1 mg L−1) were detected in January, February, March and June. Those blooms mainly happened under the influence of northern waters, with the exception of the February proliferation, when mixing conditions were found. During bloom conditions it highlights the presence of coccolithophores as proliferation precursors. During no-bloom situations the phytoplankton community was mainly constituted by nanoplanktonic flagellated forms. The Winter Mixing period was dominated by different groups of nanoflagellates, including coccolithophores, undetermined flagellates and dinoflagellates. However, in the most oligotrophic conditions (from April until November) dinoflagellates were clearly dominant, except in the DCM in summer where diatoms prevailed.

Bryde's whales are among the lesser known balaenopterids found in Brazilian waters, as well as globally. At the beginning of this project, only occasional sightings of this species were identified off the coast of São Paulo State. In this paper, we present the results of our investigations into the occurrence and behaviour of Bryde's whales along the São Paulo coast, both inside and outside the Marine State Park of Laje de Santos, as a contribution to biological and behavioural knowledge of Bryde's whales under the conservation scope. Sighting surveys were conducted from January 2003 to July 2005 in coastal and oceanic areas. During the survey, 42 sightings were made, totalling 71 individuals, between the isobaths of 20 and 3000 m. Sightings and individual rates were higher in coastal areas during the summer season. Different kinds of behaviour were observed in coastal and oceanic areas. At the 1200 m isobath, notable social interactions were observed in which four adult individuals performed breaching – the first report of this behavioural pattern for Brazil. Results suggest that Bryde's whales possibly use coastal areas for feeding and may migrate to oceanic areas for breeding, thus providing important aspects that must be considered for the proper management of Marine Protected Areas and for oceanic areas, especially considering the intensive and continuous increase of oil and gas exploitation activities in those areas. Data reported here, therefore, constitute a significant contribution in Bryde's whale research and to cetacean conservation efforts in Brazil.

Three species of lithistid sponges, Neoaulaxinia zingiberadix, Isabella mirabilis and Neoschrammeniella fulvodesmus were collected from deep seamounts off New Caledonia to address questions about their population structure, gene flow and the relative contribution of sexual and asexual reproductive strategies to their populations. The sponges were tested by sequencing the ITS (internal transcribed spacer) and CO1 regions of their genomes. These rare and presumably ancient sponges have a distribution restricted to seamounts in the south-western Pacific. Deep seamounts represent geographically separated islands. Although the sponges could be expected to have sexual reproduction restricted to near neighbours due to low sexual dispersal opportunities via larvae, this study found surprisingly high levels of gene flow between the seamounts. Amongst the specimens of N. zingiberadix taken from two seamounts there was no population structure; CO1 resulted in identical genotypes. For the population structure within N. fulvodesmus, as revealed by ITS, most of the variation was within each individual from the six seamounts on which it occurred and CO1 revealed no difference between individuals or seamounts. The third species I. mirabilis showed four genotypes based on CO1, which were distributed across all the seamounts. Indirect measures of different species showed a range of reproductive strategies from asexual to sexual, but with much higher connection between seamounts than previously thought. Individual seamounts did not show a separate population structure as one might expect from ‘islands’. The conclusion must be that these sponges have mechanisms to attain greater dispersal than previously thought.

Peracarid crustaceans are an important component of the vagile fauna associated with coralline algal beds, which often characterize the infralittoral fringe of tropical rocky shores. Among other variables affecting faunal assemblages, sedimentation, food supply and oxygen concentration within mats or turfs of coralline algae may greatly depend on the exposure to waves. In this study, peracarid assemblages were compared at replicated rocky shores within different levels of wave exposure, along a coastline in south-eastern Brazil. Overall amphipod diversity (11 species) was much higher than tanaidacean diversity (two species). Correlation analyses did not support any biological interactions between amphipods and tanaidaceans. Habitat complexity, while apparently limiting amphipod populations, did not affect tanaidaceans at a local scale. Amphipod abundance, not assemblage structure, was positively affected by wave exposure, probably improving oxygen concentration levels and renewal of food resources. Rather than abundance, which remains fairly stable, exposure to waves determined species identity in tanaidaceans, with Zeuxo coralensis found at exposed shores and Leptochelia aff. dubia found at sheltered shores, except for two L. aff. dubia individuals found at one of the exposed sites. Differences in the supply of sediment and the ability of these species in manipulating grains for tube building may explain such a striking pattern.

We estimated the abundance of Antillean manatees (Trichechus manatus manatus) through a large-scale project conducted in 2010 in north-eastern Brazil and evaluated the efficacy of an aerial survey for conservation purposes. Two observers conducted the survey via flights that maintained an altitude of 150 m and an air speed of 140 km h−1, covering over 2590.2 km2 of the coastline. Strip transects were flown in a zigzag pattern. A total of 67 manatees (on- and off-effort) were recorded in 55 sightings. Historical published records of occurrence were formally incorporated using a Bayesian approach. We estimated the manatee population for north-eastern Brazil in the form of a posterior distribution with a mean of 1104 individuals and a 95% posterior probability interval ranging from 485 to 2221 individuals, which indicates high uncertainty. More large-scale studies in the region are warranted to understand temporal trends, in addition to further studies in hotspot areas, with smaller spatial scales, to reduce the coefficient of variation and to allow the use of improved techniques for monitoring the manatees. A greater emphasis on species-specific characteristics and methods to enhance detection probability (e.g. dual observers) are also recommended. The conditions prevailing along the study area were not conducive to aerial surveillance; thus, the results are not a precise estimate of the manatee population. However, these highlight the importance of conservation efforts for the Antillean manatee, considered the most endangered aquatic mammal in Brazil.

The cyanobacteriosponge Terpios hoshinota is expanding its range across the Indo-Pacific. This species can have massive outbreaks on coral reefs, actively kill corals it overgrows and affect the entire benthic community. Although it has received much attention on the post-outbreak follow-up, little is known about its ecology, habitat preferences, and the possible environmental triggers that cause its outbreaks. We present a baseline study in the Spermonde Archipelago, Indonesia, where T. hoshinota was first observed in 2012. We surveyed 27 reefs and recorded patches between 14 and 217 cm2, at four reef sites (~15% cover). The sponge was found on both mid-shelf and outer shelf reefs but not close to the coast and the city of Makassar. Differences in benthic community structure, as well as spatial variables relating to the on-to-offshore gradient in the Spermonde archipelago, neither constrained nor promoted its expansion. Patches of the sponge were mostly overgrowing branching corals, belonging to Acroporidae species. Genetic variation within T. hoshinota was studied by sequencing partitions of the mitochondrial CO1 and nuclear ribosomal 28S gene. Two haplotypes were found within the Spermonde archipelago, which differed from the CO1 sequence in GenBank. The present study provides an indication of habitat preferences of T. hoshinota in non-outbreak conditions, although it is still unclear which environmental conditions may lead to the onset of its outbreaks.

Seamounts are expected to attract pelagic top predators due to the higher abundance of possible prey aggregating around these structures. The importance of seamounts on benthic fauna and bottom fish is vastly documented, while little is known about their role as possible hotspots of pelagic biodiversity. This aspect is poorly investigated in the Mediterranean Sea, a basin considered a hotspot of endemism and biodiversity where, in addition, seamounts are widely present, with 227 structures. Our study focuses on the determination of the attraction effect of seamounts on some pelagic species in a Mediterranean sub-basin: the Tyrrhenian Sea. Here, seamounts are thought to be attraction structures for pelagic top predators. Cetaceans and sea turtles were found to be the most attracted taxa among the top predators taken into consideration with peak of presence around 5–10 miles from the seamounts.