Almind, K & Kahn, CRGenetic determinants of energy expenditure and insulin resistance in diet-induced obesity in mice. Diabetes 2004 53 3274–3285
Atzmon, G, Yang, XM, Muzumdar, R, Ma, XH, Gabriely, I & Barzilai, NDifferential gene expression between visceral and subcutaneous fat depots. Horm Metab Res 2002 34 622–628
Ball, CA, Sherlock, G, Parkinson, Het al. The underlying principles of scientific publication. Bioinformatics 2002 18 1409
Barrett, T, Suzek, TO, Troup, DB, Wilhite, SE, Ngau, WC, Ledoux, P, Rudnev, D, Lash, AE, Fujibuchi, W & Edgar, RNCBI GEO: mining millions of expression profiles – database and tools. Nucleic Acids Res 2005 33 D562–D566
Barta, P, Monti, J, Maass, PG, Gorzelniak, K, Muller, DN, Dechend, R, Luft, FC, Hubner, N & Sharma, AMA gene expression analysis analysis in rat kidney following high and low salt intake. J Hypertens 2002 20 1115–1120
Becker, W, Kluge, R, Kantner, T, Linnartz, K, Korn, M, Tschank, G, Plum, L, Giesen, K & Joost, HGDifferential hepatic gene expression in a polygenic mouse model with insulin resistance and hyperglycemia: evidence for a combined transcriptional dysregulation of gluconeogenesis and fatty acid synthesis. J Mol Endocrinol 2004 32 195–208
Brazma, A, Hingamp, P, Quackenbush, Jet al. Minimum information about a microarray experiment (MIAME) – toward standards for microarray data. Nat Genet 2001 29 365–371
Cao, SX, Dhahbi, JM, Mote, PL & Spindler, SRGenomic profiling of short- and long-term caloric restriction effects in the liver of aging mice. Proc Natl Acad Sci USA 2001 98 10630–10635
Castro-Chavez, F, Yechoor, VK, Saha, PK, Martinez-Botas, J, Wooten, EC, Sharma, S, O'Connell, P, Taegtmeyer, H & Chan, LCoordinated upregulation of oxidative pathways and downregulation of lipid biosynthesis underlie obesity resistance in perilipin knockout mice: a microarray gene expression profile. Diabetes 2003 52 2666–2674
Crott, JW, Choi, SW, Ordovas, JM, Ditelberg, JS & Mason, JBEffects of dietary folate and aging on gene expression in the colonic mucosa of rats: implications for carcinogenesis. Carcinogenesis 2004 25 69–76
Deng, X, Elam, MB, Wilcox, HG, Cagen, LM, Park, EA, Raghow, R, Patel, D, Kumar, P, Sheybani, A & Russell, JCDietary olive oil and menhaden oil mitigate induction of lipogenesis in hyperinsulinemic corpulent JCR:LA-cp rats: microarray analysis of lipid-related gene expression. Endocrinology 2004 145 5847–5861
Dhahbi, JM, Kim, HJ, Mote, PL, Beaver, RJ & Spindler, SRTemporal linkage between the phenotypic and genomic responses to caloric restriction. Proc Natl Acad Sci USA 2004 101 5524–5529
Eletto, D, Leone, A, Bifulco, M & Tecce, MFEffect of unsaturated fat intake from Mediterranean diet on rat liver mRNA expression profile: selective modulation of genes involved in lipid metabolism. Nutr Metab Cardiovasc Dis 2005 15 13–23
Fujiwara, K, Ochiai, M, Ubagai, T, Ohki, M, Ohta, T, Nagao, M, Sugimura, T & Nakagama, HDifferential gene expression profiles in colon epithelium of two rat strains with distinct susceptibility
to colon carcinogenesis after exposure to PhIP in combination with dietary high fat. Cancer Sci 2003 94 672–678
Gabrielsson, BG, Johansson, JM, Lonn, M, Jernas, M, Olbers, T, Peltonen, M, Larsson, I, Lonn, L,Sjostrom, L, Carlsson, B & Carlsson, LMHigh expression of complement components in omental adipose tissue in obese men. Obes Res 2003 11 699–708
Gregoire, FM, Zhang, Q, Smith, SJ, Tong, C, Ross, D, Lopez, H & West, DBDiet-induced obesity and hepatic gene expression alterations in C57BL/6J and ICAM-1-deficient mice. Am J Physiol 2002 282 E703–E713
Guan, H, Arany, E, van Beek, JP, Chamson-Reig, A, Thyssen, S, Hill, DJ & Yang, KAdipose tissue gene expression profiling reveals distinct molecular pathways that define visceral adiposity in offspring of maternal protein-restricted rats. Am J Physiol 2005 288 E663–E673
Lan, H, Rabaglia, ME, Stoehr, JP, Nadler, ST, Schueler, KL, Zou, F, Yandell, BS & Attie, ADGene expression profiles of nondiabetic and diabetic obese mice suggest a role of hepatic lipogenic capacity in diabetes susceptibility. Diabetes 2003 52 688–700
Lindon, JC, Nicholson, JK, Holmes, E, Keun, HC et al. Summary recommendations for standardization and reporting of metabolic analyses. Nat Biotechnol 2005 23, 833–838.
Lopez, IP, Marti, A, Milagro, FI, Zulet Md, Mde L, Moreno-Aliaga, MJ, Martinez, JA & De Miguel, CDNA microarray analysis of genes differentially expressed in diet-induced (cafeteria) obese rats. Obes Res 2003 11, 188–194.
Martens, L, Hermjakob, H, Jones, P, Adamski, M, Taylor, C, States, D, Gevaert, K, Vandekerckhove, J & Apweiler, RPRIDE: the proteomics identifications database. Proteomics 2005 5, 3537–3545.
Moraes, RC, Blondet, A, Birkenkamp-Demtroeder, K, Tirard, J, Orntoft, TF, Gertler, A, Durand, P, Naville, D & Begeot, MStudy of the alteration of gene expression in adipose tissue of diet-induced obese mice by microarray and reverse transcription-polymerase chain reaction analyses. Endocrinology 2003 144, 4773–4782.
Mutch, DM, Simmering, R, Donnicola, D, Fotopoulos, G, Holzwarth, JA, Williamson, G & Corthesy-Theulaz, IImpact of commensal microbiota on murine gastrointestinal tract gene ontologies. Physiol Genomics 2004 19, 22–31.
Napoli, C, de Nigris, F, Welch, JS, Calara, FB, Stuart, RO, Glass, CK & Palinski, WMaternal hypercholesterolemia during pregnancy promotes early atherogenesis in LDL receptor-deficient mice and alters aortic gene expression determined by microarray. Circulation 2002 105, 1360–1367.
Oana, F, Homma, T, Takeda, H, Matsuzawa, A, Akahane, S, Isaji, M & Akahane, MDNA microarray analysis of white adipose tissue from obese (fa/fa) Zucker rats treated with a beta3-adrenoceptor agonist, KTO-7924. Pharmacol Res 2005 52, 395–400.
Parkinson, H, Sarkans, U, Shojatalab, M et al. . ArrayExpress – a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 2005 33, D553–D555.
Recinos, A III, Carr, BK, Bartos, DB, Boldogh, I, Carmical, JR, Belalcazar, LM & Brasier, ARLiver gene expression associated with diet and lesion development in atherosclerosis-prone mice: induction of components of alternative complement pathway. Physiol Genomics 2004 19, 131–142.
Roche, HM, Noone, E, Sewter, C, Mc Bennett, S, Savage, D, Gibney, MJ, O'Rahilly, S & Vidal-Puig, AJIsomer-dependent metabolic effects of conjugated linoleic acid: insights from molecular markers sterol regulatory element-binding protein-1c and LXRalpha. Diabetes 2002 51, 2037–2044.
Rota, C, Rimbach, G, Minihane, AM, Stoecklin, E & Barella, LDietary vitamin E modulates differential gene expression in the rat hippocampus: potential implications for its neuroprotective properties. Nutr Neurosci 2005 8, 21–29.
Roy, S, Lado, BH, Khanna, S & Sen, CKVitamin E sensitive
genes in the developing rat fetal brain: a high-density oligonucleotide microarray analysis. FEBS Lett 2002 530, 17–23.
Saito, K, Arai, S & Kato, HA nutrigenomics database - integrated repository for publications and associated microarray data in nutrigenomics research. Br J Nutr 2005 94, 493–495.
Sartipy, P & Loskutoff, DJExpression profiling identifies genes that continue to respond to insulin in adipocytes made insulin-resistant by treatment with tumor necrosis factor-alpha. J Biol Chem 2003 278, 52298–52306.
Sreekumar, R, Halvatsiotis, P, Schimke, JC & Nair, KSGene
expression profile in skeletal muscle of type 2 diabetes and the effect of insulin treatment. Diabetes 2002 51, 1913–1920.
Tanaka, T, Yamamoto, J, Iwasaki, S et al. Activation of peroxisome proliferator-activated receptor delta induces fatty acid betaoxidation in skeletal muscle and attenuates metabolic syndrome. Proc Natl Acad Sci USA 2003 100, 15924–15929.
Taylor, CF, Paton, NW, Garwood, KL et al. A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nat Biotechnol 2003 21, 247–254.
Tseng, YH, Butte, AJ, Kokkotou, E et al. Prediction of preadipocyte differentiation by gene expression reveals role of insulin receptor substrates and necdin. Nat Cell Biol 2005 7, 601–611.
Tsuda, T, Ueno, Y, Kojo, H, Yoshikawa, T & Osawa, TGene expression profile of isolated rat adipocytes treated with anthocyanins. Biochim Biophys Acta 2005 1733, 137–147.
van Breda, SG, van Agen, E, van Sanden, S, Burzykowski, T, Kienhuis, AS, Kleinjans, JC & van Delft, JHVegetables affect the expression of genes involved in anticarcinogenic processes in the colonic mucosa of C57BL/6 female mice. J Nutr 2005 135, 1879–1888.
van Schothorst, EM, Franssen-van Hal, N, Schaap, MM, Pennings, J, Hoebee, B & Keijer, JAdipose gene expression patterns of weight gain suggest counteracting steroid hormone synthesis. Obes Res 2005 13, 1031–1041.
Vohl, MC, Sladek, R, Robitaille, J, Gurd, S, Marceau, P, Richard, D, Hudson, TJ & Tchernof, AA survey of genes differentially expressed in subcutaneous and visceral adipose tissue in men. Obes
Res 2004 12, 1217–1222.
von Eyben, FE, Kroustrup, JP, Larsen, JF & Celis, JComparison of gene expression in intra-abdominal and subcutaneous fat: a study of men with morbid obesity and nonobese men using microarray and proteomics. Ann N Y Acad Sci 2004 1030, 508–536.
Xiao, R, Badger, TM & Simmen, FADietary exposure to soy or whey proteins alters colonic global gene expression profiles during rat colon tumorigenesis. Mol Cancer 2005 4, 1.
Yagil, C, Hubner, N, Monti, J, Schulz, H, Sapojnikov, M, Luft, FC, Ganten, D & Yagil, YIdentification of hypertension-related genes through an integrated genomic-transcriptomic approach. Circ Res 2005 96, 617–625.