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3 - The Normal Structure and Regulation of Human Globin Gene Clusters

from SECTION ONE - THE MOLECULAR, CELLULAR, AND GENETIC BASIS OF HEMOGLOBIN DISORDERS

Published online by Cambridge University Press:  03 May 2010

Martin H. Steinberg
Affiliation:
Boston University
Bernard G. Forget
Affiliation:
Yale University, Connecticut
Douglas R. Higgs
Affiliation:
MRC Institute of Molecular Medicine, University of Oxford
David J. Weatherall
Affiliation:
Albert Einstein College of Medicine, New York
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Summary

The genes encoding the different globin chains of hemoglobin are members of an ancient gene family. In this chapter we will review the structural features of the globin genes, with particular attention to the sequences needed for proper regulation of gene expression. Some of these have been well conserved during mammalian evolution and therefore are likely to provide a common function in many mammals. Others are only found in higher primates and may play roles in lineage-specific regulation. We will first describe the structural characteristics of the human globin genes and then provide a comparative analysis of the genomic contexts, regulatory regions, and evolutionary conservation of features present in the globin gene clusters.

NUMBER AND CHROMOSOMAL LOCALIZATION OF HUMAN GLOBIN GENES

Hemoglobin is a heterotetramer that contains two polypeptide subunits related to the α-globin gene subfamily (referred to here as α-like globins) and two polypeptide subunits related to the β-globin gene subfamily (β-like globins). Globin polypeptides bind heme, which in turn allows the hemoglobin in erythrocytes to bind oxygen reversibly and transport it from the lungs to respiring tissues. In humans, as in all vertebrate species studied, different α-like and β-like globin chains are synthesized at progressive stages of development to produce hemoglobins characteristic of primitive (embryonic) and definitive (fetal and adult) erythroid cells (Fig. 3.1).

Before precise knowledge of globin gene organization was gained by gene mapping and molecular cloning, a general picture of the number and arrangement of the human globin genes emerged from the genetic analysis of normal and abnormal hemoglobins and their pattern of inheritance.

Type
Chapter
Information
Disorders of Hemoglobin
Genetics, Pathophysiology, and Clinical Management
, pp. 46 - 61
Publisher: Cambridge University Press
Print publication year: 2009

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References

Weatherall, DJ, Clegg, JB. Thalassemia Syndromes. 3rd ed. Oxford: Blackwell Scientific; 1981.Google Scholar
Baglioni, C. The fusion of two peptide chains in hemoglobin Lepore and its interpretation as a genetic deletion. Proc Natl Acad Sci USA. 1962;48:1880–1886.CrossRefGoogle ScholarPubMed
Kendall, AG, Ojwang, PJ, Schroeder, WA, Huisman, TH. Hemoglobin Kenya, the product of a gamma-beta fusion gene: studies of the family. Am J Hum Genet. 1973;25:548–563.Google Scholar
Deisseroth, A, Nienhuis, A, Turner, P, et al. Localization of the human alpha globin structural gene to chromosome 16 in somatic cell hybrids by molecular hybridization assay. Cell. 1977;12:205–218.CrossRefGoogle ScholarPubMed
Deisseroth, A, Nienhuis, AW, Lawrence, J, Giles, RE, Turner, P, Ruddle, FH. Chromosomal localization of the human beta globin gene to human chromosome 11 in somatic cell hybrids. Proc Natl Acad Sci USA. 1978;75:1456–1460.CrossRefGoogle ScholarPubMed
Tilghman, SM, Tiemeier, DC, Seidman, JG, et al. Intervening sequence of DNA identified in the structural portion of a mouse beta-globin gene. Proc Natl Acad Sci USA. 1978;75:725–729.CrossRefGoogle ScholarPubMed
Goodman, M, Czelusniak, J, Koop, B, Tagle, D, Slightom, J. Globins: a case study in molecular phylogeny. Cold Spring Harbor Symp Quant Biol. 1987;52:875–890.CrossRefGoogle ScholarPubMed
Proudfoot, NJ, Gil, A, Maniatis, T. The structure of the human zeta-globin gene and a closely linked, nearly identical pseudogene. Cell. 1982;31:553–563.CrossRefGoogle Scholar
Tilghman, SM, Curtis, PJ, Tiemeier, DC, Leder, P, Weissmann, C. The intervening sequence of a mouse beta-globin gene is transcribed within the 15S beta-globin mRNA precursor. Proc Natl Acad Sci USA. 1978;75:1309–1313.CrossRefGoogle ScholarPubMed
Krainer, AR, Maniatis, T, Ruskin, B, Green, MR. Normal and mutant human beta-globin pre-mRNAs are faithfully and efficiently spliced in vitro. Cell. 1984;36:993–1005.CrossRefGoogle ScholarPubMed
Mount, SM. A catalogue of splice junction sequences. Nucl Acids Res. 1982;10:459–472.CrossRefGoogle ScholarPubMed
Padgett, RA, Grabowski, PJ, Konarska, MM, Seiler, S, Sharp, PA. Splicing of messenger RNA precursors. Annu Rev Biochem. 1986;55:1119–50.CrossRefGoogle ScholarPubMed
Patrinos, GP, Giardine, B, Riemer, C, et al. Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies. Nucl Acids Res. 2004;32 Database issue:D537–D541.CrossRefGoogle ScholarPubMed
Giardine, B, Riemer, C, Hefferon, T, et al. PhenCode: connecting ENCODE data with mutations and phenotype. Hum Mutat. 2007;28:554–562.CrossRefGoogle ScholarPubMed
Jeffreys, AJ, Flavell, RA. The rabbit beta-globin gene contains a large large insert in the coding sequence. Cell. 1977;12:1097–1108.CrossRefGoogle ScholarPubMed
Tuan, D, Biro, PA, deRiel, JK, Lazarus, H, Forget, BG. Restriction endonuclease mapping of the human gamma globin gene loci. Nucl Acids Res. 1979;6:2519–2544.CrossRefGoogle ScholarPubMed
Southern, EM. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975; 98:503–517.CrossRefGoogle ScholarPubMed
Fritsch, E, Lawn, R, Maniatis, T. Molecular cloning and characterization of the human beta-like globin gene cluster. Cell. 1980;19:959–972.CrossRefGoogle ScholarPubMed
Zhang, Z, Gerstein, M. Large-scale analysis of pseudogenes in the human genome. Curr Opin Genet Dev. 2004;14:328–335.CrossRefGoogle ScholarPubMed
Hsu, S, Marks, J, Shaw, J, et al. Structure and expression of the human theta 1 globin gene. Nature. 1988;331:94–96.CrossRefGoogle ScholarPubMed
Ley, TJ, Maloney, KA, Gordon, JI, Schwartz, AL. Globin gene expression in erythroid human fetal liver cells. J Clin Invest. 1989;83:1032–1038.CrossRefGoogle ScholarPubMed
Albitar, M, Peschle, C, Liebhaber, SA. Theta, zeta and epsilon globin messenger RNA are expressed in adults. Blood. 1989; 74:629–637.Google ScholarPubMed
Goh, SH, Lee, YT, Bhanu, NV, et al. A newly discovered human alpha-globin gene. Blood. 2005;106:1466–1472.CrossRefGoogle ScholarPubMed
Cooper, SJ, Wheeler, D, Leo, A, et al. The mammalian alphaD-globin gene lineage and a new model for the molecular evolution of alpha-globin gene clusters at the stem of the mammalian radiation. Mol Phylogenet Evol. 2006;38:439–448.CrossRefGoogle Scholar
Hardison, RC, Sawada, I, Cheng, J-F, Shen, C-KJ, Schmid, CW. A previously undetected pseudogene in the human alpha globin gene cluster. Nucl Acids Res. 1986;14:1903–1911.CrossRefGoogle ScholarPubMed
Hughes, JR, Cheng, JF, Ventress, N, et al. Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences. Proc Natl Acad Sci USA. 2005;102:9830–9835.CrossRefGoogle ScholarPubMed
Clegg, JB. Can the product of the theta gene be a real globin?Nature. 1987;329:465–466.CrossRefGoogle ScholarPubMed
Craddock, CF, Vyas, P, Sharpe, JA, Ayyub, H, Wood, WG, Higgs, DR. Contrasting effects of alpha and beta globin regulatory elements on chromatin structure may be related to their different chromosomal environments. EMBO J. 1995;14:1718–1726.Google ScholarPubMed
Lander, ES, Linton, LM, Birren, B, et al. Initial sequencing and analysis of the human genome. Nature. 2001;409:860–921.CrossRefGoogle ScholarPubMed
Bird, AP. CpG-rich islands and the function of DNA methylation. Nature. 1986;321:209–213.CrossRefGoogle ScholarPubMed
Collins, FS, Weissman, SM. The molecular genetics of human hemoglobin. Prog Nucl Acids Res Mol Biol. 1984;31: 315–462.CrossRefGoogle ScholarPubMed
Fischel-Ghodsian, N, Nicholls, RD, Higgs, DR. Unusual features of CpG-rich (HTF) islands in the human α-globin complex: association with nonfunctional pseudogenes and presence within the 3′ portion of the ς genes. Nucl Acids Res. 1987;15:9215–9225.CrossRefGoogle Scholar
Groudine, M, Kohwi-Shigematsu, T, Gelinas, R, Stamatoyannopoylos, G, Papyannopoulou, T. Human fetal to adult hemoglobin switching: changes in chromatin structure of the β-globin gene locus. Proc Natl Acad Sci USA. 1983;80: 7551–7555.CrossRefGoogle ScholarPubMed
Ploeg, LHT, Flavell, RA. DNA methylation in the human g-d-b globin locus in erythroid and nonerythroid tissues. Cell. 1980;19:947–958.CrossRefGoogle Scholar
Bird, A, Taggart, M, Nicholls, R, Higgs, D. Non-methylated CpG-rich islands at the human α-globin locus: implications for evolution of the α-globin pseudogene. EMBO J. 1987;6:999–1004.Google ScholarPubMed
Epner, E, Rifkind, RA, Marks, PA. Replication of alpha and beta globin DNA sequences occurs during early S phase in murine erythroleukemia cells. Proc Natl Acad Sci USA. 1981;78:3058–3062.CrossRefGoogle Scholar
Goldman, MA, Holmquist, GP, Gray, MC, Caston, , Nag, A. Replication timing of genes and middle repetitive sequences. Science. 1984;224:686–692.CrossRefGoogle ScholarPubMed
Dhar, V, Mager, D, Iqbal, A, Schildkraut, CL. The co-ordinate replication of the human b-globin gene domain reflects its transcriptional activity and nuclease hypersensitivity. Mol Cell Biol. 1988;8:4958–4965.CrossRefGoogle Scholar
Bulger, M, Bender, MA, Doorninck, JH, et al. Comparative structural and functional analysis of the olfactory receptor genes flanking the human and mouse β-globin gene clusters. Proc Natl Acad Sci USA. 2000;97:14560–14565.CrossRefGoogle ScholarPubMed
Feingold, EA, Forget, BG. The breakpoint of a large deletion causing hereditary persistence of fetal hemoglobin occurs within an erythroid DNA domain remote from the beta-globin gene cluster. Blood. 1989;74:2178–2186.Google ScholarPubMed
Anagnou, NP, Perez-Stable, C, Gelinas, R, et al. Sequences located 3′ to the breakpoint of the hereditary persistence of fetal hemoglobin-3 deletion exhibit enhancer activity and can modify the developmental expression of the human fetal A gamma-globin gene in transgenic mice. J Biol Chem. 1995;270:10256–10263.CrossRefGoogle Scholar
Flint, J, Thomas, K, Micklem, G, et al. The relationship between chromosome structure and function at a human telomeric region. Nat Genet. 1997;15:252–257.CrossRefGoogle Scholar
Anguita, E, Johnson, CA, Wood, WG, Turner, BM, Higgs, DR. Identification of a conserved erythroid specific domain of histone acetylation across the alpha-globin gene cluster. Proc Natl Acad Sci USA. 2001;98:12114–12119.CrossRefGoogle ScholarPubMed
Flint, J, Tufarelli, C, Peden, J, et al. Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster. Hum Mol Genet. 2001;10:371–382.CrossRefGoogle ScholarPubMed
Gumucio, DL, Heilstedt-Williamson, H, Gray, TA, et al. Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human γ and ε globin genes. Mol Cell Biol. 1992;12:4919–4929.CrossRefGoogle ScholarPubMed
Gumucio, D, Shelton, D, Zhu, W, et al. Evolutionary strategies for the elucidation of cis and trans factors that regulate the developmental switching programs of the beta-like globin genes. Mol Phylog Evol. 1996;5:18–32.CrossRefGoogle ScholarPubMed
Elnitski, L. Conserved E boxes in the locus control region contribute to enhanced expression of beta-globin genes via TAL1 and other basic helix-loop-helix proteins. The Pennsylvania State University; 1998.
Tagle, DA, Koop, BF, Goodman, M, Slightom, J, Hess, DL, Jones, RT. Embryonic ε and γ globin genes of a prosimian primate (Galago crassicaudatus): Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints. J Mol Biol. 1988;203:7469–7480.CrossRefGoogle ScholarPubMed
Gumucio, DL, Shelton, DA, Blanchard-McQuate, K, et al. Differential phylogenetic footprinting as a means to identify base changes responsible for recruitment of the anthropoid γ gene to a fetal expression pattern. J Biol Chem. 1994;269:15371–15380.Google ScholarPubMed
Hardison, R, Miller, W. Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters. Mol Biol Evol. 1993;10:73–102.Google Scholar
Margot, JB, Demers, GW, Hardison, RC. Complete nucleotide sequence of the rabbit beta-like globin gene cluster: Analysis of intergenic sequences and comparison with the human beta-like globin gene cluster. J Mol Biol. 1989;205:15–40.CrossRefGoogle ScholarPubMed
Shehee, R, Loeb, DD, Adey, NB, et al. Nucleotide sequence of the BALB/c mouse β-globin complex. J Mol Biol. 1989; 205:41–62.CrossRefGoogle ScholarPubMed
Hardison, R, Krane, D, Vandenbergh, D, et al. Sequence and comparative analysis of the rabbit alpha-like globin gene cluster reveals a rapid mode of evolution in a G+C-rich region of mammalian genomes. J Mol Biol. 1991;222:233–249.CrossRefGoogle Scholar
Hardison, RC. The nucleotide sequence of the rabbit embryonic globin gene β4. J Biol Chem. 1983;258:8739–8744.Google Scholar
Cooper, GM, Brudno, M, Stone, EA, Dubchak, I, Batzoglou, S, Sidow, A. Characterization of evolutionary rates and constraints in three Mammalian genomes. Genome Res. 2004;14:539–548.CrossRefGoogle ScholarPubMed
Siepel, A, Bejerano, G, Pedersen, JS, et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 2005;15:1034–1050.CrossRefGoogle ScholarPubMed
Taylor, J, Tyekucheva, S, King, DC, Hardison, RC, Miller, W, Chiaromonte, F. ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements. Genome Res. 2006;16:1596–1604.CrossRefGoogle ScholarPubMed
Maston, GA, Evans, SK, Green, MR. Transcriptional regulatory elements in the human genome. Annu Rev Genomics Hum Genet. 2006;7:29–59.CrossRefGoogle ScholarPubMed
Efstratiadis, A, Posakony, JW, Maniatis, T, et al. The structure and evolution of the human β-globin gene family. Cell. 1980;21:653–668.CrossRefGoogle ScholarPubMed
Stuve, LL, Myers, RM. A directly repeated sequence in the β-globin promoter regulates transcription in murine erythroleukemia cells. Mol Cell Biol. 1990;10:972–981.CrossRefGoogle ScholarPubMed
Carninci, P, Sandelin, A, Lenhard, B, et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet. 2006;38:626–635.CrossRefGoogle ScholarPubMed
Cohen, RB, Sheffery, M, Kim, CG. Partial purification of a nuclear protein that binds to the CCAAT box of the mouse α1-globin gene. Mol Cell Biol. 1986;6:821–832.CrossRefGoogle Scholar
deBoer, E, Antoniou, M, Mignotte, V, Wall, L, Grosveld, F. The human β-globin promoter; nuclear protein factors and erythroid specific induction of transcription. EMBO J. 1988;7:4203–4212.Google Scholar
Miller, IJ, Bieker, JJ. A novel, erythroid cell-specific murine transcription factor that binds to the CACCC element and is related to the Kruppel family of nuclear factors. Mol Cell Biol. 1993;13:2776–2786.CrossRefGoogle Scholar
Perkins, AC, Sharpe, AH, Orkin, SH. Lethal β-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF. Nature. 1995;375:318–322.CrossRefGoogle ScholarPubMed
Asano, H, Li, XS, Stamatoyannopoulos, G. FKLF, a novel Kruppel-like factor that activates human embryonic and fetal beta-like globin genes. Mol Cell Biol. 1999;19:3571–3579.CrossRefGoogle ScholarPubMed
Pevny, L, Simon, MC, Robertson, E, et al. Erythroid differentiation in chimaeric mice blocked by a targeted mutation in the gene for transcription factor GATA-1. Nature. 1991;349:257–60.CrossRefGoogle ScholarPubMed
Simon, MC, Pevny, L, Wiles, MV, Keller, G, Costantini, F, Orkin, SH. Rescue of erythroid development in gene targeted GATA-1-mouse embryonic stem cells. Nat Genet. 1992;1:92–98.CrossRefGoogle ScholarPubMed
Welch, JJ, Watts, JA, Vakoc, CR, et al. Global regulation of erythroid gene expression by transcription factor GATA-1. Blood. 2004;104:3136–3147.CrossRefGoogle ScholarPubMed
Martin, D, Orkin, S. Transcriptional activation and DNA binding by the erythroid factor GF-1/NF-E1/Eryf 1. Genes Dev. 1990;4:1886–1898.CrossRefGoogle ScholarPubMed
Gong, Q-H, Dean, A. Enhancer-dependent transcripion of the ε-globin promoter requires promoter-bound GATA-1 and enhancer-bound AP-1/NF-E2. Mol Cell Biol. 1993;13:911–917.CrossRefGoogle Scholar
Macleod, K, Plumb, M. Derepression of mouse β-major-globin gene transcription during erythroid differentiation. Mol Cell Biol. 1991;11:4324–4332.CrossRefGoogle ScholarPubMed
Hardison, R, Chao, K-M, Schwartz, S, Stojanovic, N, Ganetsky, M, Miller, W. Globin gene server: A prototype E-mail database server featuring extensive multiple alignments and data compilation. Genomics. 1994;21:344–353.CrossRefGoogle ScholarPubMed
Antoniou, M, deBoer, E, Habets, G, Grosveld, F. The human β–globin gene contains multiple regulatory regions: Identification of one promoter and two downstream enhancers. EMBO J. 1988;7:377–384.Google ScholarPubMed
Lloyd, JA, Case, SS, Ponce, E, Lingrel, JB. Positive transcriptional regulation of the human γ-globin gene: γPE is a novel nuclear factor with multiple binding sites near the gene. J Biol Chem. 1994;269:26–34.Google Scholar
TomHon, C, Zhu, W, Millinoff, D, et al. Evolution of a fetal expression pattern via cis-changes near the γ-globin gene. J Biol Chem. 1997;272:14062–14066.CrossRefGoogle ScholarPubMed
Jane, SM, Ney, PA, Vanin, EF, Gumucio, DL, Nienhuis, AW. Identification of a stage selector element in the human γ-globin gene promoter that fosters preferential interaction with the 5′ HS2 enhancer when in competition with the β-promoter. EMBO J. 1992;11:2961–2969.Google ScholarPubMed
Pondel, M, Murphy, S, Pearson, L, Craddock, C, Proudfoot, N. Sp1 functions in a chromatin-dependent manner to augment human alpha-globin promoter activity. Proc Natl Acad Sci USA. 1995;92:7237–7241.CrossRefGoogle Scholar
Shewchuk, BM, Hardison, RC. CpG islands from the α-globin gene cluster increase gene expression in an integration-dependent manner. Mol Cell Biol. 1997;17:5856–5866.CrossRefGoogle Scholar
Trudel, M, Magram, J, Bruckner, L, Costantini, F. Upstream G gamma-globin and downstream beta-globin sequences required for stage-specific expression in transgenic mice. Mol Cell Biol. 1987;7:4024–4029.CrossRefGoogle ScholarPubMed
Tjian, R, Maniatis, T. Transcriptional activation: A complex puzzle with few easy pieces. Cell. 1994;77:5–8.CrossRefGoogle ScholarPubMed
Trudel, M, Costantini, F. A 3′ enhancer contributes to the stage-specific expression of the human β-globin gene. Genes Dev. 1987;1:954–961.CrossRefGoogle ScholarPubMed
Behringer, RR, Hammer, RE, Brinster, RL, Palmiter, RD, Townes, TM. Two 3′ sequences direct adult erythroid-specific expression of human beta-globin genes in transgenic mice. Proc Natl Acad Sci USA. 1987;84:7056–7060.CrossRefGoogle ScholarPubMed
Liu, Q, Bungert, J, Engel, JD. Mutation of gene-proximal regulatory elements disrupts human epsilon-, gamma-, and beta-globin expression in yeast artificial chromosome transgenic mice. Proc Natl Acad Sci USA. 1997;94:169–174.CrossRefGoogle ScholarPubMed
Bodine, D, Ley, T. An enhancer element lies 3′ to the human A gamma globin gene. EMBO J. 1987;6:2997–3004.Google Scholar
Liu, Q, Tanimoto, K, Bungert, J, Engel, JD. The A gamma-globin 3′ element provides no unique function(s) for human beta-globin locus gene regulation. Proc Natl Acad Sci USA. 1998;95:9944–9949.CrossRefGoogle ScholarPubMed
Wall, L, deBoer, E, Grosveld, F. The human β-globin gene 3′ enhancer contains multiple binding sites for an erythroid-specific protein. Genes Dev. 1988;2:1089–1100.CrossRefGoogle ScholarPubMed
Puruker, M, Bodine, D, Lin, H, McDonagh, K, Nienhuis, AW. Structure and function of the enhancer 3′ to the human Aγ-globin gene. Nucl Acids Res. 1990;18:7407–7415.CrossRefGoogle Scholar
Grosveld, F, Antoniou, M, Berry, M, et al. The regulation of human globin gene switching. Philos Trans R Soc Lond. 1993;339:183–191.CrossRefGoogle ScholarPubMed
Hardison, R, Slightom, JL, Gumucio, DL, Goodman, M, Stojanovic, N, Miller, W. Locus control regions of mammalian β-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights. Gene. 1997;205:73–94.CrossRefGoogle ScholarPubMed
Higgs, D, Wood, W, Jarman, A, et al. A major positive regulatory region located far upstream of the human α-globin gene locus. Genes Dev. 1990;4:1588–1601.CrossRefGoogle Scholar
Chada, K, Magram, J, Costantini, F. Tissue- and stage-specific expression of a cloned adult beta globin gene in transgenic mice. Prog Clin Biol Res. 1985;191:305–319.Google ScholarPubMed
Grosveld, F, Assendelft, GB, Greaves, D, Kollias, G. Position-independent, high-level expression of the human β-globin gene in transgenic mice. Cell. 1987;51:975–985.CrossRefGoogle ScholarPubMed
Sharpe, JA, Chan-Thomas, PS, Lida, J, Ayyub, H, Wood, WG, Higgs, DR. Analysis of the human α-globin upstream regulatory element (HS-40) in transgenic mice. EMBO J. 1992;11:4565–4572.Google Scholar
Ren, S, Luo, X-n, Atweh, G. The major regulatory element upstream of the α-globin gene has classical and inducible enhancer activity. Blood. 1993;81:1058–1066.Google ScholarPubMed
Tuan, D, Abelovich, A, Lee-Oldham, M, Lee, D. Identification of regulatory elements of human b-like globin genes. In: Stamatoyannopoulos, G, Nienhuis, AW, eds. Developmental Control of Globin Gene Expression. New York: A.R. Liss; 1987:211–220.Google Scholar
Forrester, W, Takegawa, S, Papayannopoulou, T, Stamatoyannopoulos, G, Groudine, M. Evidence for a locus activating region: The formation of developmentally stable hypersensitive sites in globin-expressing hybrids. Nucl Acids Res. 1987;15:10159–10177.CrossRefGoogle Scholar
Dhar, V, Nandi, A, Schildkraut, CL, Skoultchi, AI. Erythroid-specific nuclease-hypersensitive sites flanking the human b-globin gene cluster. Mol Cell Biol. 1990;10:4324–4333.CrossRefGoogle Scholar
Jarman, A, Wood, W, Sharpe, J, Gourdon, G, Ayyub, H, Higgs, D. Characterization of the major regulatory element upstream of the human α-globin gene cluster. Mol Cell Biol. 1991;11:4679–4689.CrossRefGoogle ScholarPubMed
Higgs, DR. Do LCRs open chromatin domains?Cell. 1998;95: 299–302.CrossRefGoogle ScholarPubMed
Forrester, WC, Epner, E, Driscoll, MC, et al. A deletion of the human b-globin locus activation region causes a major alteration in chromatin structure and replication across the entire b-globin locus. Genes Dev. 1990;4:1637–1649.CrossRefGoogle Scholar
Bender, MA, Byron, R, Ragoczy, T, Telling, A, Bulger, M, Groudine, M. Flanking HS-62.5 and 3′ HS1, and regions upstream of the LCR, are not required for beta-globin transcription. Blood. 2006;108:1395–1401.CrossRefGoogle Scholar
Fraser, P, Hurst, J, Collis, P, Grosveld, F. DNase I hypersensitive sites 1, 2 and 3 of the human b-globin dominant control region direct position-independent expression. Nucl Acids Res. 1990;18:3503–3508.CrossRefGoogle Scholar
Alami, R, Greally, JM, Tanimoto, K, et al. beta-globin YAC transgenes exhibit uniform expression levels but position effect variegation in mice. Hum Mol Genet. 2000;9:631–636.CrossRefGoogle ScholarPubMed
Motohashi, H, Shavit, JA, Igarashi, K, Yamamoto, M, Engel, JD. The world according to Maf. Nucl. Acids Res. 1997;25:2953–2959.CrossRefGoogle ScholarPubMed
Orkin, S. Regulation of globin gene expression in erythroid cells. Eur J Biochem. 1995;231:271–281.CrossRefGoogle ScholarPubMed
Baron, MH. Transcriptional control of globin gene switching during vertebrate development. Biochim Biophys Acta. 1997;1351:51–72.CrossRefGoogle ScholarPubMed
Evans, T, Felsenfeld, G, Reitman, M. Control of globin gene transcription. Annu Rev Cell Biol. 1990;6:95–124.CrossRefGoogle ScholarPubMed
Shelton, DA, Stegman, L, Hardison, R, et al. Phylogenetic footprinting of hypersensitive site 3 of the β-globin locus control region. Blood. 1997;89:3457–3469.Google ScholarPubMed
Talbot, D, Philipsen, S, Fraser, P, Grosveld, F. Detailed analysis of the site 3 region of the human β-globin dominant control region. EMBO J. 1990;9:2169–2178.Google ScholarPubMed
Strauss, EC, Andrews, NC, Higgs, DR, Orkin, SH. In vivo footprinting of the human α-globin locus upstream regulatory element by guanine and adenine ligation-mediated polymerase chain reaction. Mol Cell Biol. 1992;12:2135–2142.CrossRefGoogle ScholarPubMed
Reddy, PMS, Stamatoyannopoulos, G, Papayannopoulou, T, Shen, C-KJ. Genomic footprinting and sequencing of human β-globin locus: Tissue specificity and cell line artifact. J Biol Chem. 1994;269:8287–8295.Google ScholarPubMed
Forsberg, EC, Downs, KM, Bresnick, EH. Direct interaction of NF-E2 with hypersensitive site 2 of the beta-globin locus control region in living cells. Blood. 2000;96:334–339.Google ScholarPubMed
Sawado, T, Igarashi, K, Groudine, M. Activation of beta-major globin gene transcription is associated with recruitment of NF-E2 to the beta-globin LCR and gene promoter. Proc Natl Acad Sci USA. 2001;98:10226–10231.CrossRefGoogle ScholarPubMed
Letting, DL, Rakowski, C, Weiss, MJ, Blobel, GA. Formation of a tissue-specific histone acetylation pattern by the hematopoietic transcription factor GATA-1. Mol Cell Biol. 2003;23:1334–1340.CrossRefGoogle ScholarPubMed
Anguita, E, Hughes, J, Heyworth, C, Blobel, GA, Wood, WG, Higgs, DR. Globin gene activation during haemopoiesis is driven by protein complexes nucleated by GATA-1 and GATA-2. EMBO J. 2004;23:2841–2852.CrossRefGoogle ScholarPubMed
Ney, P, Sorrentino, B, McDonagh, K, Nienhuis, A. Tandem AP-1-binding sites within the human β-globin dominant control region function as an inducible enhancer in erythroid cells. Genes Dev. 1990;4:993–1006.CrossRefGoogle ScholarPubMed
Caterina, JJ, Ciavatta, DJ, Donze, D, Behringer, RR, Townes, TM. Multiple elements in human β-globin locus control region 5′ HS2 are involved in enhancer activity and position-independent transgene expression. Nucl Acids Res. 1994;22:1006–1011.CrossRefGoogle Scholar
Gong, Q, McDowell, JC, Dean, A. Essential role of NF-E2 in remodeling of chromatin structure and transcriptional activation of the ε-globin gene in vivo by 5′ hypersensitive site 2 of the β-globin locus control region. Mol Cell Biol. 1996; 16:6055–6064.CrossRefGoogle ScholarPubMed
Stamatoyannopoulos, JA, Goodwin, A, Joyce, T, Lowrey, CH. NFE2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human β-globin locus control region. EMBO J. 1995;14:106–116.Google ScholarPubMed
Kent, WJ, Sugnet, CW, Furey, TS, et al. The human genome browser at UCSC. Genome Res. 2002;12:996–1006.CrossRefGoogle ScholarPubMed
Hsu, F, Kent, WJ, Clawson, H, Kuhn, RM, Diekhans, M, Haussler, D. The UCSC known genes. Bioinformatics. 2006;22:1036–1046.CrossRefGoogle ScholarPubMed
Montgomery, SB, Griffith, OL, Sleumer, MC, et al. ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinformatics. 2006;22:637–640.CrossRefGoogle ScholarPubMed

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