Skip to main content Accessibility help
×
Hostname: page-component-5c6d5d7d68-wbk2r Total loading time: 0 Render date: 2024-08-19T21:46:48.825Z Has data issue: false hasContentIssue false

15 - Noninvasive prenatal diagnosis using cell-free fetal nucleic acids in maternal plasma

Published online by Cambridge University Press:  25 January 2011

Stephen A. Bustin
Affiliation:
Queen Mary University of London
Get access

Summary

Prenatal diagnosis is now an established part of the modern obstetrics practice. For genetic and chromosomal analyses, however, conventional definitive methods for prenatal diagnosis would typically start with the invasive sampling of fetal materials, using procedures such as amniocentesis and chorionic villus sampling. These procedures are associated with a finite risk to the fetus. Thus, over the last forty years, many researchers have attempted to develop methods for noninvasive prenatal diagnosis that do not carry such a risk. In particular, much effort has been spent on the development of noninvasive methods for screening certain chromosomal aneuploidies, especially trisomy 21. Approaches such as ultrasonography and serum biochemical screening have been developed for this purpose. Although the recent developments in these approaches are remarkable, these methods essentially measure epiphenomena that are associated with chromosomal aneuploidies and do not analyze the core pathology of these disorders – namely, the actual chromosome abnormality.

To allow the direct analysis of this core pathology, a noninvasive source of fetal genetic material is needed. Investigators in this field have initially targeted fetal nucleated cells that may have entered into the maternal circulation, including trophoblasts, lymphocytes, and nucleated red blood cells. However, the extreme rarity of such cells in the maternal circulation (of the order of a few cells per milliliter of blood) has been a major impediment to the development of the field.

Type
Chapter
Information
The PCR Revolution
Basic Technologies and Applications
, pp. 243 - 253
Publisher: Cambridge University Press
Print publication year: 2009

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Tabor, A, Philip, J, Madsen, M, Bang, J, Obel, EB, Norgaard-Pedersen, B (1986) Randomised controlled trial of genetic amniocentesis in 4606 low-risk women. The Lancet 1: 1287–1293.CrossRefGoogle ScholarPubMed
Malone, FD, Canick, JA, Ball, RH, Nyberg, DA, Comstock, CH, Bukowski, R, et al. (2005) First-trimester or second-trimester screening, or both, for Down's syndrome. New England Journal of Medicine 353: 2001–2011.CrossRefGoogle ScholarPubMed
Covone, AE, Mutton, D, Johnson, PM, Adinolfi, M (1984) Trophoblast cells in peripheral blood from pregnant women. The Lancet 2: 841–843.CrossRefGoogle ScholarPubMed
Herzenberg, , Bianchi, DW, Schroder, J, Cann, HM, Iverson, GM (1979) Fetal cells in the blood of pregnant women: detection and enrichment by fluorescence-activated cell sorting. Proceedings of the National Academy of Sciences of the United States of America 76: 1453–1455.CrossRefGoogle ScholarPubMed
Bianchi, DW, Flint, AF, Pizzimenti, MF, Knoll, JH, Latt, SA (1990) Isolation of fetal DNA from nucleated erythrocytes in maternal blood. Proceedings of the National Academy of Sciences of the United States of America 87: 3279–3283.CrossRefGoogle ScholarPubMed
Bianchi, DW, Williams, JM, Sullivan, LM, Hanson, FW, Klinger, KW, Shuber, AP (1997) PCR quantitation of fetal cells in maternal blood in normal and aneuploid pregnancies. American Journal of Human Genetics 61: 822–829.CrossRefGoogle ScholarPubMed
Bianchi, DW, Simpson, JL, Jackson, LG, Elias, S, Holzgreve, W, Evans, MI, et al. (2002) Fetal gender and aneuploidy detection using fetal cells in maternal blood: analysis of NIFTY I data. National Institute of Child Health and Development Fetal Cell Isolation Study. Prenatal Diagnosis 22: 609–615.CrossRefGoogle ScholarPubMed
Chen, XQ, Stroun, M, Magnenat, JL, Nicod, LP, Kurt, AM, Lyautey, J, et al. (1996) Microsatellite alterations in plasma DNA of small cell lung cancer patients. Nature Medicine 2: 1033–1035.CrossRefGoogle ScholarPubMed
Nawroz, H, Koch, W, Anker, P, Stroun, M, Sidransky, D (1996) Microsatellite alterations in serum DNA of head and neck cancer patients. Nature Medicine 2: 1035–1037.CrossRefGoogle ScholarPubMed
Strickland, S, Richards, WG (1992) Invasion of the trophoblasts. Cell 71: 355–357.CrossRefGoogle ScholarPubMed
Chou, Q, Russell, M, Birch, , Raymond, J, Bloch, W (1992) Prevention of pre-PCR mis-priming and primer dimerization improves low-copy-number amplifications. Nucleic Acids Research 20: 1717–1723.CrossRefGoogle ScholarPubMed
Emanuel, SL, Pestka, S (1993) Amplification of specific gene products from human serum. Genetic Analysis, Techniques and Applications 10: 144–146.CrossRefGoogle ScholarPubMed
Lo, YM, Corbetta, N, Chamberlain, PF, Rai, V, Sargent, IL, Redman, CW, et al. (1997). Presence of fetal DNA in maternal plasma and serum. The Lancet 350: 485–487.CrossRefGoogle ScholarPubMed
Heid, CA, Stevens, J, Livak, KJ, Williams, PM (1996) Real time quantitative PCR. Genome Research 6: 986–994.CrossRefGoogle ScholarPubMed
Lo, YM, Tein, MS, Lau, TK, Haines, CJ, Leung, TN, Poon, PM, et al. (1998) Quantitative analysis of fetal DNA in maternal plasma and serum: implications for noninvasive prenatal diagnosis. American Journal of Human Genetics 62: 768–775.CrossRefGoogle ScholarPubMed
Rijnders, RJ, Schoot, CE, Bossers, B, Vroede, MA, Christiaens, GC (2001) Fetal sex determination from maternal plasma in pregnancies at risk for congenital adrenal hyperplasia. Obstetrics and Gynecology 98: 374–378.Google ScholarPubMed
Costa, JM, Benachi, A, Gautier, E (2002) New strategy for prenatal diagnosis of X-linked disorders. New England Journal of Medicine 346: 1502.CrossRefGoogle ScholarPubMed
Lo, YM, Hjelm, NM, Fidler, C, Sargent, IL, Murphy, MF, Chamberlain, PF, et al. (1998) Prenatal diagnosis of fetal RhD status by molecular analysis of maternal plasma. New England Journal of Medicine 339: 1734–1738.CrossRefGoogle ScholarPubMed
Finning, KM, Martin, P, Summers, J, Massey, E, Poole, G, Daniels, G. (2008) Effect of high throughput RHD typing of fetal DNA in maternal plasma on use of anti-RhD immunolglobulin in RhD negative pregnant women: prospective feasibility study. British Medical Journal 336: 816–818.CrossRefGoogle Scholar
Lo, YM, Lau, TK, Zhang, J, Leung, TN, Chang, AM, Hjelm, NM, et al. (1999) Increased fetal DNA concentrations in the plasma of pregnant women carrying fetuses with trisomy 21. Clinical Chemistry 45: 1747–1751.Google ScholarPubMed
Lo, YM, Leung, TN, Tein, MS, Sargent, IL, Zhang, J, Lau, TK, et al. (1999) Quantitative abnormalities of fetal DNA in maternal serum in preeclampsia. Clinical Chemistry 45: 184–188.Google ScholarPubMed
Levine, RJ, Qian, C, Leshane, ES, Yu, KF, England, LJ, Schisterman, EF, et al. (2004) Two-stage elevation of cell-free fetal DNA in maternal sera before onset of preeclampsia. American Journal of Obstetrics and Gynecology 190: 707–713.CrossRefGoogle ScholarPubMed
Leung, TN, Zhang, J, Lau, TK, Hjelm, NM, Lo, YM (1998) Maternal plasma fetal DNA as a marker for preterm labour. The Lancet 352: 1904–1905.CrossRefGoogle ScholarPubMed
Poon, LL, Leung, TN, Lau, TK, Chow, KC, Lo, YM (2002) Differential DNA methylation between fetus and mother as a strategy for detecting fetal DNA in maternal plasma. Clinical Chemistry 48: 35–41.Google ScholarPubMed
Herman, JG, Graff, JR, Myohanen, S, Nelkin, BD, Baylin, SB (1996) Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proceedings of the National Academy of Sciences of the United States of America 93: 9821–9826.CrossRefGoogle ScholarPubMed
Chim, SS, Tong, YK, Chiu, RW, Lau, TK, Leung, TN, Chan, LY, et al. (2005) Detection of the placental epigenetic signature of the maspin gene in maternal plasma. Proceedings of the National Academy of Sciences of the United States of America 102: 14753–14758.CrossRefGoogle ScholarPubMed
Flori, E, Doray, B, Gautier, E, Kohler, M, Ernault, P, Flori, J, et al. (2004) Circulating cell-free fetal DNA in maternal serum appears to originate from cyto- and syncytio-trophoblastic cells. Case report. Human Reproduction 19: 723–724.CrossRefGoogle ScholarPubMed
Lui, YY, Chik, KW, Chiu, RW, Ho, CY, Lam, CW, Lo, YM (2002) Predominant hematopoietic origin of cell-free DNA in plasma and serum after sex-mismatched bone marrow transplantation. Clinical Chemistry 48: 421–427.Google ScholarPubMed
Lo, YM, Wong, IH, Zhang, J, Tein, MS, Ng, MH, Hjelm, NM (1999) Quantitative analysis of aberrant p16 methylation using real-time quantitative methylation-specific polymerase chain reaction. Cancer Research 59: 3899–3903.Google ScholarPubMed
Grunau, C, Clark, SJ, Rosenthal, A (2001) Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. Nucleic Acids Research 29: E65–5.CrossRefGoogle ScholarPubMed
Chan, KC, Ding, C, Gerovassili, A, Yeung, SW, Chiu, RW, Leung, TN, et al. (2006) Hypermethylated RASSF1A in maternal plasma: a universal fetal DNA marker that improves the reliability of noninvasive prenatal diagnosis. Clinical Chemistry 52: 2211–2218.CrossRefGoogle ScholarPubMed
Chiu, RW, Chim, SS, Wong, IH, Wong, CS, Lee, WS, To, KF, et al. (2007) Hypermethylation of RASSF1A in human and rhesus placentas. American Journal of Pathology 170: 941–950.CrossRefGoogle ScholarPubMed
Tong, YK, Ding, C, Chiu, RW, Gerovassili, A, Chim, SS, Leung, TY, et al. (2006) Noninvasive prenatal detection of fetal trisomy 18 by epigenetic allelic ratio analysis in maternal plasma: theoretical and empirical considerations. Clinical Chemistry 52: 2194–2202.CrossRefGoogle ScholarPubMed
Chim, SS, Jin, S, Lee, TY, Lun, FM, Lee, WS, Chan, LY, et al. (2008) Systematic search for placental DNA-methylation markers on chromosome 21: toward a maternal plasma-based epigenetic test for fetal trisomy 21. Clinical Chemistry 54: 500–511.CrossRefGoogle Scholar
Poon, LL, Leung, TN, Lau, TK, Lo, YM (2000) Presence of fetal RNA in maternal plasma. Clinical Chemistry 46: 1832–1834.Google ScholarPubMed
Tsui, NB, Ng, EK, Lo, YM (2002) Stability of endogenous and added RNA in blood specimens, serum, and plasma. Clinical Chemistry 48: 1647–1653.Google ScholarPubMed
Ng, EK, Tsui, NB, Lam, NY, Chiu, RW, Yu, SC, Wong, SC, et al. (2002) Presence of filterable and nonfilterable mRNA in the plasma of cancer patients and healthy individuals. Clinical Chemistry 48: 1212–1217.Google ScholarPubMed
Ng, EK, Tsui, NB, Lau, TK, Leung, TN, Chiu, RW, Panesar, NS, et al. (2003) mRNA of placental origin is readily detectable in maternal plasma. Proceedings of the National Academy of Sciences of the United States of America 100: 4748–4753.CrossRefGoogle ScholarPubMed
Bustin, SA (2000) Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. Journal of Molecular Endocrinology 25: 169–193.CrossRefGoogle ScholarPubMed
Myers, TW, Gelfand, DH (1991) Reverse transcription and DNA amplification by a Thermus thermophilus DNA polymerase. Biochemistry 30: 7661–7666.CrossRefGoogle ScholarPubMed
Tsui, NB, Chim, SS, Chiu, RW, Lau, TK, Ng, EK, Leung, TN, et al. (2004) Systematic microarray-based identification of placental mRNA in maternal plasma: towards non-invasive prenatal gene expression profiling. Journal of Medical Genetics 41: 461–467.CrossRefGoogle Scholar
Lo, YM, Tsui, NB, Chiu, RW, Lau, TK, Leung, TN, Heung, MM, et al. (2007) Plasma placental RNA allelic ratio permits noninvasive prenatal chromosomal aneuploidy detection. Nature Medicine 13: 218–223.CrossRefGoogle ScholarPubMed
Tang, K, Fu, DJ, Julien, D, Braun, A, Cantor, CR, Koster, H (1999) Chip-based genotyping by mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America 96: 10016–10020.CrossRefGoogle ScholarPubMed
Vogelstein, B, Kinzler, KW (1999) Digital PCR. Proceedings of the National Academy of Sciences of the United States of America 96: 9236–9241.CrossRefGoogle ScholarPubMed
Lo, YM, Lun, FM, Chan, KC, Tsui, NB, Chong, KC, Lau, TK, et al. (2007) Digital PCR for the molecular detection of fetal chromosomal aneuploidy. Proceedings of the National Academy of Sciences of the United States of America 104: 13116–13121.CrossRefGoogle ScholarPubMed
Chiu, RW, Chan, KC, Gao, Y, Lau, VY, Zheng, W, Leung, TY, et al. (2008) Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma. Proceedings of the National Academy of Sciences of the United States of America 105: 20458–20463.CrossRefGoogle ScholarPubMed
Fan, HC, Blumenfeld, YJ, Chitkara, U, Hudgins, L, Quake, SR (2008) Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood. Proceedings of the National Academy of Sciences of the United States of America 105: 16266–16271.CrossRefGoogle ScholarPubMed
Lun, FM, Tsui, NB, Chan, KC, Leung, TY, Lau, TK, Charoenkwan, P, et al. (2008) Noninvasive prenatal diagnosis of monogenic diseases by digital size selection and relative mutation dosage on DNA in maternal plasma. Proceedings of the National Academy of Sciences of the United States of America 105: 19920–19925.CrossRefGoogle ScholarPubMed
Chiu, RW, Cantor, CR, Lo, YM (2009) Noninvasive prenatal diagnosis by single molecule counting technologies. Trends in Genetics 25: (in press).CrossRefGoogle Scholar

Save book to Kindle

To save this book to your Kindle, first ensure coreplatform@cambridge.org is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

Available formats
×