Book contents
- Frontmatter
- Contents
- Preface
- 1 Introduction
- 2 Pairwise alignment
- 3 Markov chains and hidden Markov models
- 4 Pairwise alignment using HMMs
- 5 Profile HMMs for sequence families
- 6 Multiple sequence alignment methods
- 7 Building phylogenetic trees
- 8 Probabilistic approaches to phylogeny
- 9 Transformational grammars
- 10 RNA structure analysis
- 11 Background on probability
- Bibliography
- Author index
- Subject index
2 - Pairwise alignment
Published online by Cambridge University Press: 05 September 2012
- Frontmatter
- Contents
- Preface
- 1 Introduction
- 2 Pairwise alignment
- 3 Markov chains and hidden Markov models
- 4 Pairwise alignment using HMMs
- 5 Profile HMMs for sequence families
- 6 Multiple sequence alignment methods
- 7 Building phylogenetic trees
- 8 Probabilistic approaches to phylogeny
- 9 Transformational grammars
- 10 RNA structure analysis
- 11 Background on probability
- Bibliography
- Author index
- Subject index
Summary
![Image of the first page of this content. For PDF version, please use the ‘Save PDF’ preceeding this image.'](https://static.cambridge.org/content/id/urn%3Acambridge.org%3Aid%3Abook%3A9780511790492/resource/name/firstPage-9780511790492c2_p12-46_CBO.jpg)
- Type
- Chapter
- Information
- Biological Sequence AnalysisProbabilistic Models of Proteins and Nucleic Acids, pp. 12 - 46Publisher: Cambridge University PressPrint publication year: 1998
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