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33 - MicroRNAs in the stem cells of the mouse blastocyst

from VI - MicroRNAs in stem cell development

Published online by Cambridge University Press:  22 August 2009

Hristo B. Houbaviy
Affiliation:
Department of Cell Biology University of Medicine & Dentistry of New Jersey Two Medical Center Drive Stratford, NJ 08084-1489 USA
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Summary

Introduction

The earliest differentiation event in mammalian embryogenesis is the formation of the inner cell mass (ICM) and the trophoblast compartments of the blastocyst (Theiler, 1989; Kaufman and Bard, 1999). While the ICM gives rise to the embryo proper and to the extraembryonic membranes found in mammals as well as reptiles and birds, the trophoblast contributes exclusively to the placenta, an organ that exists only in eutherian mammals.

Pluripotent stem cell lines can be derived from both the ICM and the trophoblast (Evans and Kaufman, 1981; Martin, 1981; Tanaka et al., 1998). Embryonic stem (ES) cells, the derivatives of the ICM, differentiate into all cell types of the embryo proper when injected into recipient blastocysts. Their counterpart, the trophoblastic stem (TS) cells contribute only to the placental lineages of recipient blastocysts. At least some of this in vivo developmental potential can be recapitulated in vitro and the directed differentiation of ES and TS cells into defined cell types is a very active field of study with obvious therapeutic implications.

ES cells are almost identical to the so-called embryonic germ (EG) cell lines, which are derived from the primordial germ cells (PGC) of the embryo (Labosky et al., 1994; Stewart et al., 1994). Thus, ES cells are thought to share some characteristics with the germ line stem cells. Indeed, molecules required for the maintenance of the pluripotent ES cell state, such as the transcription factors Nanog and Oct-4, are also expressed in the germ line and its precursors (Niwa et al., 2000; Pesce and Scholer, 2001; Chambers et al., 2003; Mitsui et al., 2003; Kehler et al., 2004).

Type
Chapter
Information
MicroRNAs
From Basic Science to Disease Biology
, pp. 445 - 466
Publisher: Cambridge University Press
Print publication year: 2007

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References

Ambros, V., Bartel, B., Bartel, D. P.et al. (2003). A uniform system for microRNA annotation. RNA, 9, 277–279.Google Scholar
Andrews, P. W., Przyborski, S. A. and Thomson, J. A. (2001). Embryonal carcinoma cells as embryonic stem cells. In Stem Cell Biology, Marshak, D. R., Gardner, R. L. and Gottlieb, D. (eds.). Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press, pp. 231–265.
Aravin, A. A., Naumova, N. M., Tulin, A. V.et al. (2001). Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Current Biology, 11, 1017–1027.Google Scholar
Aravin, A. A., Klenov, M. S., Vagin, V. V.et al. (2004). Dissection of a natural RNA silencing process in the Drosophila melanogaster germ line. Molecular Cell Biology, 24, 6742–6750.Google Scholar
Bartel, D. P. (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281–297.Google Scholar
Baulcombe, D. (2004). RNA silencing in plants. Nature, 431, 356–363.Google Scholar
Bentwich, I., Avniel, A., Karov, Y.et al. (2005). Identification of hundreds of conserved and nonconserved human microRNAs. Nature Genetics, 37, 766–770.Google Scholar
Bernstein, A., MacCormick, R. and Martin, G. S. (1976). Transformation-defective mutants of avian sarcoma viruses: the genetic relationship between conditional and nonconditional mutants. Virology, 70, 206–209.Google Scholar
Bernstein, E., Kim, S. Y., Carmell, M. A.et al. (2003). Dicer is essential for mouse development. Nature Genetics, 35, 215–217.Google Scholar
Cam, H. P., Sugiyama, T., Chen, E. S.et al. (2005). Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome. Nature Genetics, 37, 809–819.Google Scholar
Chambers, I., Colby, D., Robertson, M.et al. (2003). Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell, 113, 643–655.Google Scholar
Cherry, S. R., Biniszkiewicz, D., Parijs, L., Baltimore, D. and Jaenisch, R. (2000). Retroviral expression in embryonic stem cells and hematopoietic stem cells. Molecular Cell Biology, 20, 7419–7426.Google Scholar
Cox, D. N., Chao, A., Baker, J.et al. (1998). A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal. Genes & Development, 12, 3715–3727.Google Scholar
Cox, D. N., Chao, A. and Lin, H. (2000). piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells. Development, 127, 503–514.Google Scholar
Deng, W. and Lin, H. (2002). miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis. Developmental Cell, 2, 819–830.Google Scholar
Doench, J. G. and Sharp, P. A. (2004). Specificity of microRNA target selection in translational repression. Genes & Development, 18, 504–511.Google Scholar
Doench, J. G., Petersen, C. P. and Sharp, P. A. (2003). siRNAs can function as miRNAs. Genes & Development, 17, 438–442.Google Scholar
Eddy, S. R., Mitchison, G. and Durbin, R. (1995). Maximum discrimination hidden Markov models of sequence consensus. Journal of Computational Biology, 2, 9–23.Google Scholar
Elbashir, S. M., Lendeckel, W. and Tuschl, T. (2001a). RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes & Development, 15, 188–200.Google Scholar
Elbashir, S. M., Martinez, J., Patkaniowska, A., Lendeckel, W. and Tuschl, T. (2001b). Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate. European Molecular Biology Organization Journal, 20, 6877–6888.Google Scholar
Evans, M. J. and Kaufman, M. H. (1981). Establishment in culture of pluripotential cells from mouse embryos. Nature, 292, 154–156.Google Scholar
Hall, I. M., Shankaranarayana, G. D., Noma, K.et al. (2002). Establishment and maintenance of a heterochromatin domain. Science, 297, 2232–2237.Google Scholar
Harfe, B. D., McManus, M. T., Mansfield, J. H., Hornstein, E. and Tabin, C. J. (2005). The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb. Proceedings of the National Academy of Sciences USA, 102, 10 898–10 903.Google Scholar
Hatfield, S. D., Shcherbata, H. R., Fischer, K. A.et al. (2005). Stem cell division is regulated by the microRNA pathway. Nature, 435, 974–978.Google Scholar
Houbaviy, H. B., Murray, M. F. and Sharp, P. A. (2003). Embryonic stem cell-specific microRNAs. Developmental Cell, 5, 351–358.Google Scholar
Houbaviy, H. B., Dennis, L., Jaenisch, R. and Sharp, P. A. (2005). Characterization of a highly variable eutherian microRNA gene. RNA, 11, 1245–1257.Google Scholar
Hutvagner, G., McLachlan, J., Pasquinelli, A. E.et al. (2001). A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science, 293, 834–838.Google Scholar
Kanellopoulou, C., Muljo, S. A., Kung, A. L.et al. (2005). Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing. Genes & Development, 19, 489–501.Google Scholar
Kaufman, M. H. and Bard, J. B. L. (1999). The Anatomical Basis of Mouse Development. San Diego: Academic Press.
Kawasaki, H. and Taira, K. (2004). Induction of DNA methylation and gene silencing by short interfering RNAs in human cells. Nature, 431, 211–217.Google Scholar
Kehler, J., Tolkunova, E., Koschorz, B.et al. (2004). Oct4 is required for primordial germ cell survival. European Molecular Biology Organization Reports, 5, 1078–1083.Google Scholar
Ketting, R. F., Haverkamp, T. H., Luenen, H. G. and Plasterk, R. H. (1999). Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD. Cell, 99, 133–141.Google Scholar
Kim, J., Krichevsky, A., Grad, Y.et al. (2004). Identification of many microRNAs that copurify with polyribosomes in mammalian neurons. Proceedings of the National Academy of Sciences USA, 101, 360–365.Google Scholar
Kuramochi-Miyagawa, S., Kimura, T., Ijiri, T. W.et al. (2004). Mili, a mammalian member of piwi family gene, is essential for spermatogenesis. Development, 131, 839–849.Google Scholar
Labosky, P. A., Barlow, D. P. and Hogan, B. L. (1994). Mouse embryonic germ (EG) cell lines: transmission through the germline and differences in the methylation imprint of insulin-like growth factor 2 receptor (Igf2r) gene compared with embryonic stem (ES) cell lines. Development, 120, 3197–3204.Google Scholar
Lagos-Quintana, M., Rauhut, R., Lendeckel, W. and Tuschl, T. (2001). Identification of novel genes coding for small expressed RNAs. Science, 294, 853–858.Google Scholar
Lagos-Quintana, M., Rauhut, R., Yalcin, A.et al. (2002). Identification of tissue-specific microRNAs from mouse. Current Biology, 12, 735–739.Google Scholar
Lau, N. C., Lim, L. P., Weinstein, E. G. and Bartel, D. P. (2001). An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science, 294, 858–862.Google Scholar
Lee, J. T., Strauss, W. M., Dausman, J. A. and Jaenisch, R. (1996). A 450 kb transgene displays properties of the mammalian X-inactivation center. Cell, 86, 83–94.Google Scholar
Lee, J. T., Davidow, L. S. and Warshawsky, D. (1999). Tsix, a gene antisense to Xist at the X-inactivation centre. Nature Genetics, 21, 400–404.Google Scholar
Lee, R. C. and Ambros, V. (2001). An extensive class of small RNAs in Caenorhabditis elegans. Science, 294, 862–864.Google Scholar
Lee, R. C., Feinbaum, R. L. and Ambros, V. (1993). The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 75, 843–854.Google Scholar
Lee, Y. S., Nakahara, K., Pham, J. W.et al. (2004). Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell, 117, 69–81.Google Scholar
Lewis, B. P., Shih, I. H., Jones-Rhoades, M. W., Bartel, D. P. and Burge, C. B. (2003). Prediction of mammalian microRNA targets. Cell, 115, 787–798.Google Scholar
Lewis, B. P., Burge, C. B. and Bartel, D. P. (2005). Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15–20.Google Scholar
Martin, G. R. (1981). Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. Proceedings of the National Academy of Sciences USA, 78, 7634–7638.Google Scholar
Mitsui, K., Tokuzawa, Y., Itoh, H.et al. (2003). The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell, 113, 631–642.Google Scholar
Mochizuki, K., Fine, N. A., Fujisawa, T. and Gorovsky, M. A. (2002). Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena. Cell, 110, 689–699.Google Scholar
Mochizuki, K. and Gorovsky, M. A. (2004). Small RNAs in genome rearrangement in Tetrahymena. Current Opinions in Genetics and Development, 14, 181–187.Google Scholar
Morris, K. V., Chan, S. W., Jacobsen, S. E. and Looney, D. J. (2004). Small interfering RNA-induced transcriptional gene silencing in human cells. Science, 305, 1289–1292.Google Scholar
Murchison, E. P., Partridge, J. F., Tam, O. H., Cheloufi, S. and Hannon, G. J. (2005). Characterization of Dicer-deficient murine embryonic stem cells. Proceedings of the National Academy of Sciences USA, 102, 12 135–12 140.Google Scholar
Niwa, H., Miyazaki, J. and Smith, A. G. (2000). Quantitative expression of 10/-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nature Genetics, 24, 372–376.Google Scholar
Pal-Bhadra, M., Bhadra, U. and Birchler, J. A. (2002). RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila. Molecular Cell, 9, 315–327.Google Scholar
Pal-Bhadra, M., Leibovitch, B. A., Gandhi, S. G.et al. (2004). Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science, 303, 669–672.Google Scholar
Panning, B., Dausman, J. and Jaenisch, R. (1997). X chromosome inactivation is mediated by Xist RNA stabilization. Cell, 90, 907–916.Google Scholar
Pesce, M. and Scholer, H. R. (2001). Oct-4: gatekeeper in the beginnings of mammalian development. Stem Cells, 19, 271–278.Google Scholar
Reinhart, B. J., Slack, F. J., Basson, M.et al. (2000). The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature, 403, 901–906.Google Scholar
Rossant, J. and Cross, J. C. (2001). Placental development: lessons from mouse mutants. Nature Reviews Genetics, 2, 538–548.Google Scholar
Seitz, H., Youngson, N., Lin, S. P.et al. (2003). Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene. Nature Genetics, 34, 261–262.Google Scholar
Seitz, H., Royo, H., Bortolin, M. L.et al. (2004). A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain. Genome Research, 14, 1741–1748.Google Scholar
Smith, A. (2001). Embryonic stem cells. In Stem Cell Biology, Marshak, D. R., Gardner, R. L. and Gottlieb, D. (eds.). Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press, pp. 205–230.
Sonnhammer, E. L. and Durbin, R. (1995). A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene, 167, GC1–10.Google Scholar
Stewart, C. L., Gadi, I. and Bhatt, H. (1994). Stem cells from primordial germ cells can reenter the germ line. Developmental Biology, 161, 626–628.Google Scholar
Suh, M. R., Lee, Y., Kim, J. Y.et al. (2004). Human embryonic stem cells express a unique set of microRNAs. Developmental Biology, 270, 488–498.Google Scholar
Tanaka, S., Kunath, T., Hadjantonakis, A. K., Nagy, A. and Rossant, J. (1998). Promotion of trophoblast stem cell proliferation by FGF4. Science, 282, 2072–2075.Google Scholar
Theiler, K. (1989). The House Mouse: Atlas of Embryonic Development. New York: Springer-Verlag.
Verdel, A., Jia, S., Gerber, S.et al. (2004). RNAi-mediated targeting of heterochromatin by the RITS complex. Science, 303, 672–676.Google Scholar
Volpe, T. A., Kidner, C., Hall, I. M.et al. (2002). Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science, 297, 1833–1837.Google Scholar
Wienholds, E., Kloosterman, W. P., Miska, E.et al. (2005). MicroRNA expression in zebrafish embryonic development. Science, 309, 310–311.Google Scholar
Wutz, A. and Jaenisch, R. (2000). A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation. Molecular Cell, 5, 695–705.Google Scholar
Xie, Z., Johansen, L. K., Gustafson, A. M.et al. (2004). Genetic and functional diversification of small RNA pathways in plants. Public Library of Science Biology, 2, E104.Google Scholar
Zamore, P. D., Tuschl, T., Sharp, P. A. and Bartel, D. P. (2000). RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell, 101, 25–33.Google Scholar
Zhang, H., Kolb, F. A., Brondani, V., Billy, E. and Filipowicz, W. (2002). Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. European Molecular Biology Organization Journal, 21, 5875–5885.Google Scholar
Zhang, H., Kolb, F. A., Jaskiewicz, L., Westhof, E. and Filipowicz, W. (2004). Single processing center models for human Dicer and bacterial RNase III. Cell, 118, 57–68.Google Scholar
Zuker, M., Mathews, D. H. and Turner, D. H. (1999). Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In RNA Biochemistry and Biotechnology, Barciszewski, J. and Clark, B. F. C. (eds.). Kluwer Academic Publishers.

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