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Diet quality associated peripheral blood DNA methylation signatures

Published online by Cambridge University Press:  10 June 2020

Jiantao Ma
Affiliation:
Tufts University, Boston, USA National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, USA
Casey Rebholz
Affiliation:
Johns Hopkins University, Baltimore, USA
Kim Braun
Affiliation:
Erasmus University Medical Center, Rotterdam, Netherlands
Lindsay Reynolds
Affiliation:
Wake Forest School of Medicine, Winston-Salem, USA
Stella Aslibekyan
Affiliation:
University of Alabama, Birmingham, USA
Trudy Voortman
Affiliation:
Erasmus University Medical Center, Rotterdam, Netherlands
Myriam Fornage
Affiliation:
The University of Texas Health Science Cente, Houston, USA
Daniel Levy
Affiliation:
National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, USA Framingham Heart Study, Framingham, USA
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Abstract

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Leukocyte DNA methylation patterns associated with habitual diet may reveal molecular mechanisms involved in the pathogenesis of diet-related chronic diseases and highlight targets for prevention and treatment. We aimed to examine peripheral blood derived leukocyte DNA methylation signatures associated with diet quality. We meta-analyzed epigenome-wide associations between diet quality and DNA methylation levels at over 400,000 cytosine-guanine dinucleotides (CpGs). We conducted analysis primarily in 6,662 European ancestry (EA) participants and secondarily in a group additionally including 3,062 participants of non-European ancestry from five population-based cohort studies. DNA methylation profiles were measured in whole blood, CD4 + T-cells, or CD14 + monocytes. We used food frequency questionnaires to assess habitual intake and constructed two diet quality scores: the Mediterranean-style diet score (MDS) and Alternative Healthy Eating Index (AHEI). Our primary analysis identified 32 diet-associated CpGs, 12 CpGs for MDS and 24 CpGs for AHEI (at FDR < 0.05, corresponding p-values = 1.2×10-6 and 3.1×10-6, respectively) in EA participants. Four of these CpGs were associated with both MDS and AHEI. In addition, Mendelian randomization analysis indicated that seven diet-associated CpGs were causally linked to at least one of the CVD risk factors. For example, hypermethylation of cg11250194 (FADS2), which was associated with higher diet quality scores, was also associated with lower fasting triglycerides concentrations (p-value = 1.5×10-14) and higher high-density lipoprotein cholesterol concentrations (p-value = 1.7×10-8). Transethnic meta-analysis identified nine additional CpGs associated with diet quality (either MDS or AHEI) at FDR < 0.05. Overall quality of habitual diet was associated with differential peripheral leukocyte DNA methylation levels of 32 CpGs in EA participants. The diet-associated CpGs may serve as biomarkers and targets for preventive measures in CVD health. Future studies are warranted to examine diet-associated DNA methylation patterns in larger, ethnically diverse study samples.

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Abstract
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Copyright © The Authors 2020