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NIASGBsnp: integration of single nucleotide polymorphism data of rice (Oryzasativa L.) genetic resources

Published online by Cambridge University Press:  21 March 2013

Masaru Takeya ,
Fukuhiro Yamasaki ,
Sachiko Hattori  and
Kaworu Ebana
Masaru Takeya*
Affiliation:
Genetic Resources Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki305-8602, Japan
Fukuhiro Yamasaki
Affiliation:
Genetic Resources Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki305-8602, Japan
Sachiko Hattori
Affiliation:
Genetic Resources Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki305-8602, Japan
Kaworu Ebana
Affiliation:
Genetic Resources Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki305-8602, Japan
*
* Corresponding author. E-mail: katu@affrc.go.jp
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Abstract

The NIASGBsnp system manages data on single nucleotide polymorphisms (SNPs) of rice (Oryzasativa L.) genetic resources in the National Institute of Agrobiological Science (NIAS) Genebank. NIASGBsnp currently holds data on 768 SNP markers for 301 rice accessions and plans to add the SNP data of active rice accessions in the NIAS Genebank. It can show differences between accessions by graphical genotyping. Passport, characteristics and evaluation data of accessions can be retrieved to allow phenotype to be associated with genotype. NIASGBsnp will support various research purposes such as genomic selection and plant pathology research.

Keywords

databasegenebanksgraphical genotypeOryzasativa LSNPWeb-based retrieval system
Type
Short Communication
Information
Plant Genetic Resources , Volume 11 , Issue 3 , December 2013 , pp. 221 - 224
Copyright
Copyright © NIAB 2013 

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References

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