Pilophorus fruticosus Li S. Wang & Xin Y. Wang is described from south-west China. It is characterized by the presence of densely dichotomously branched, partly decorticated pseudopodetia, and by having single, spherical apothecia on the apices of the pseudopodetia. The species grows on siliceous rocks in alpine regions of the Yunnan Province. A detailed description and illustrations are provided. The new taxon is compared with other Pilophorus species.

A new lichen species, Aspicilia digitata Sohrabi & Litterski, is described and illustrated. It differs from the Eurasian and American A. fruticulosa and A. hispida by having a more or less spherical thallus, a very intricate structure of finger-like, cylindrical branchlets and black spots on the tips of the branchlets. Aspicilia digitata is a terricolous vagrant species found at high altitudes in the Tian-Shan Mountains, Kyrgyzstan. It is not known in the fertile condition and presumably reproduces by fragmentation. Molecular comparisons with other related species are provided.

Species of Usnea with black pigmentation in the cortex and dark apothecial discs are informally referred to as neuropogonoid lichens. Here we studied the phylogenetic relationships of the core group of neuropogonoid lichens using DNA sequence data of three loci: nuclear ITS and IGS rDNA and RPB1. Maximum likelihood and Bayesian analyses revealed monophyly of 11 neuropogonoid species, with U. ciliata and U. subcapillaris forming a separate lineage. The backbone of the phylogeny of the core group was not resolved with statistical confidence, but relationships of groups of two to three species received strong support (U. acromelana +U. aurantiaco-atra; U. messutiae+U. pallidocarpa; U. sphacelata+U. subantarctica+U. trachycarpa; U. lambii+U. perpusilla+U. ushuaiensis). The new combination U. lambii (Imshaug) Wirtz & Lumbsch comb. nov. is made and U. messutiae Wirtz & Lumbsch sp. nov. is described.

The study of the type and additional material of Buellia andicola, B. hypophana and B. reagens has shown that these taxa are conspecific with B. thiopoliza. Buellia thiopoliza is a muscicolous species growing at middle to high altitudes in the mountains of both hemispheres. It is easily recognized by its K+ purple-red yellow pigment mainly concentrated in the hypothecium, and by the presence of xanthones in the thallus and the apothecial tissues. The new combination Tetramelas thiopolizus is proposed. A key to all known Tetramelas species is included. The also muscicolous Buellia hypoleuca is reduced to synonymy with Phaeorrhiza sareptana var. sphaerocarpa.

Schistophoron indicum, a new lichen species, is described from India. It is characterized by lirellate mazaediate ascomata and dark brown, broadly ellipsoid to subglobose, bilocular to tetralocular-submuriform, smooth-walled, small ascospores.

This study focuses on European Usnea species with sorediate shrubby thalli, with the aim to evaluate the morphological and chemical separation of species in the light of molecular data. Twenty-two Usnea species, including widely distributed taxa such as U. diplotypus, U. fulvoreagens, U. glabrescens, U. lapponica, U. subfloridana, U. substerilis and U. wasmuthii, were included in the study using Bayesian and maximum parsimony analyses of nuclear ITS and beta-tubulin sequences. The analyses showed that: 1) most taxa that are morphologically well delimited are also distinct by means of molecular characters, 2) shrubby taxa in the section Usnea that are difficult to determine by traditional characters form a group of closely related but still genetically distinct entities, except U. diplotypus and U. substerilis which appear to be polyphyletic. The branch lengths differed largely between two parts of the ITS tree (sections Usnea and Ceratinae). Usnea intermedia is proposed as the sexually reproducing counterpart for the sorediate U. lapponica. Additionally, some new chemotypes of Usnea species were determined.

The new species Lecanora ulrikii from Bhutan and Thailand is described. It belongs to Lecanora s. str. and is characterized by relatively large, orange-brown to brown apothecia that are constricted at the base, a clear to inspersed hymenium, an epihymenium of the glabrata-type, and by the presence of atranorin, usnic acid and the isoarthothelin chemosyndrome. Further, three species, L. arthothelinella, L. austrotropica and L. subimmergens, are reported for the first time from Thailand.

In 1915 Hue described Lecanora (sect. Placodium) aequata growing over quartzite rocks from Busan and the Kangwon Provinces of South Korea. Later Zahlbruckner (1931) transferred it to the genus Caloplaca. Careful examination of syntype material of L. aequata lodged at The Natural History Museum, UK (BM) demonstrates that the species is conspecific with C. cinnabarina (Ach.) Zahlbr. and we henceforth synonymize it with that species.

The new genus Halegrapha is introduced, with six species (five new species and one new combination) from Australia, the Philippines, Malaysia, Kenya, Mexico, and the United States: H. chimaera Rivas Plata & Lücking (type species; Philippines), H. floridana Common & Lücking (United States: Florida), H. intergrapha Hale ex Lücking (Malaysia), H. kenyana Kalb & Lücking (Kenya), H. mexicana A. B. Peña & Lücking (Mexico), and H. mucronata (Stirt.) Lücking (Australia). The genus resembles Graphis morphologically in the strongly carbonized, black lirellae and white-grey thallus strongly encrusted with calcium oxalate crystals, but has a Phaeographis-type hymenium (clear in two species) and ascospores, making it a ‘chimera’ between the two genera. Molecular data suggest the genus to be closely related to Phaeographis and allies but genetically distinct from any of the genera currently recognized, including Platygramme.

A chemotaxonomic study was carried out on the Lethariella cladonioides complex, including L. sernanderi and L. cashmeriana of the subgenus Chlorea, based on extensive field surveys and a detailed morphological and chemical analysis. Only one species, L. cladonioides made up of five chemical races, is recognized. Lethariella sernanderi and L. cashmeriana are reduced to synonyms under L. cladonioides. The presence of a remarkable chemical polymorphism within the population of L. cladonioides is demonstrated. New data on the chemistry and the distribution of the species are presented.

The new lichenicolous fungus, Abrothallus halei sp. nov., is described. The species is characterized by having 4-celled ascospores with a strongly constricted median septum, which split into two 2-celled part-spores, even when still inside the ascus. This is the first Abrothallus known from the genus Lobaria, and the species is reported from Norway and the USA, occurring on L. quercizans and L. pulmonaria.

Based on morphological, anatomical, chemical, ecological and molecular evidence, Blarneya is synonymized here with Tylophoron. The molecular phylogeny derived from sequences obtained from sporodochia of Blarneya places this genus, described to accommodate an anamorphic lichen with white cushion-shaped sporodochia, within Tylophoron. This conclusion is further supported by the discovery of Tylophoron-type ascomata emerging directly from thalli with Blarneya-type sporodochia and producing identical hyaline conidia. In one specimen pycnidia were also observed. This represents a surprising variety of morphologically different conidiomata. A different anamorphic type was previously reported from Tylophoron, and this is confirmed here by molecular analysis for T. moderatum: besides thalli with ascomata this species has anamorphic thalli with an irregularly delimited brown sporodochial felt and brown conidia. Ascomata are not known from these entirely anamorphic thalli, whereas they do occur infrequently in Tylophoron species with Blarneya-type sporodochia. A key to all currently accepted species of Tylophoron is provided. In addition to the corticolous Tylophoron hibernicum, confined to humid forests, two saxicolous species with Blarneya-type sporodochia are described here as new: T. galapagoense, known only from Galapagos, differs from T. hibernicum by a thicker, more compact, beige rather than white, more strongly C+ red thallus, growing below sheltered rock overhangs in dry forests; T. stalactiticum has a C− thallus with stipitate, white, C+ red sporodochia; the species is known only from a single locality in Tenerife, on a large slope with volcanic boulders.

The cetrarioid core group has been the focus of numerous taxonomic and phylogenetic studies in recent years, yet the phylogenetic resolution and support among these clades remains unclear. Here we use four commonly employed loci to estimate if their use increases phylogenetic resolution and support. The present study largely confirms the topologies of previous studies, but with increased support. Approximately half of the genera in the cetrarioid core were not monophyletic. Melanelia sorediella was clustered within Cetrariella, and the combination Cetrariella sorediella (Lettau) V. J. Rico & A. Thell comb. nov. is made. Additionally, the genus Flavocetrariella was supported as part of Nephromopsis and is considered to be a synonym of the latter. Finally, a comparison of genetic distances shows that the maximum intrageneric genetic distance encompassed by many cetrarioid genera is lower than that of many other genera in Parmeliaceae.

The crustose lichen genus Mycoblastus in the Northern Hemisphere includes eight recognized species sharing large, simple ascospores produced 1–2 per ascus in strongly pigmented biatorine apothecia. The monophyly of Mycoblastus and the relationship of its various species to Tephromelataceae have never been studied in detail. Data from ITS rDNA and the genes coding for translation elongation factor 1-α and DNA replication licensing factor mini-chromosome maintenance complex 7 support the distinctness of Mycoblastus s. str. from the core of the Tephromelataceae, but recover M. fucatus and an undescribed Asian species as strongly supported within the latter group. We propose accommodating these two species in a new genus, Violella, which is characterized by its brownish inner ascospore walls, Fucatus-violet hymenial pigment granules and secondary chemistry, and discuss the position of Violella relative to Calvitimela and Tephromela. We describe the new species Violella wangii T. Sprib. & Goffinet to accommodate a new species with roccellic acid from Bhutan, China, India and the Russian Far East. We also exclude Mycoblastus indicus Awasthi & Agarwal from the genus Mycoblastus and propose for it the new combination Malmidea indica (Awasthi & Agarwal) Hafellner & T. Sprib.

Lichens respond sensitively to ambient nitrogen levels. Global change, which includes the increase of nitrogen-polluted environments, causes the decline of species sensitive to eutrophication, whereas some species tolerant of high nitrogen levels increase. Lichens produce hundreds of carbon-based secondary substances (so-called lichen substances), most of which are unique to the lichen symbiosis. In the present paper, correlative patterns between the eutrophication tolerance of lichen species and their secondary chemistry are analyzed using two data sets, one classifying the eutrophication tolerance of more than 500 Central European lichen species, and another of epiphytic lichens from more than 1200 plots from the Netherlands. Analyses show that, in general, the diversity of lichen secondary metabolites decreases along with increasing tolerance to eutrophication. Most notable is the reduced diversity of depsides and depsidones, the two largest groups of lichen substances, but dibenzofurans and fatty acids are also generally found in lichens sensitive to eutrophication. Conversely, anthraquinones and pulvinic acids are found most frequently in lichens from nitrogen-rich environments that can result from eutrophication. A family-wide analysis of the datasets indicates that loss of chemical diversity is not due to a single species-rich lichen family, but a characteristic of many lichen families.

The lichen genus Sporodochiolichen is installed to accommodate a group of four, so far undescribed, tropical corticolous lichen species with arthric conidia in discrete sporodochia. Three species are so far only known from Papua New Guinea; one is known from five countries on two continents and is probably pantropical.

The Caloplaca crenulatella species complex is monophyletic, based on analysis of ITS nrDNA sequences. It is characterized mainly by its ascospores and a simplified thallus. Caloplaca aquensis, C. borysthenica, C. interfulgens, C. lactea, C. marmorata and C. tominii represent well-defined monophyletic lineages within it. Caloplaca diffusa, described here as a new species, is a well-supported lineage with a distinctive phenotype. Caloplaca crenulatella s. lat. and C. ferrarii s. lat. are heterogeneous taxa appearing in four and two places respectively within our tree. Caloplaca ochracea also belongs to the group, although it has different ascospore characters. Caloplaca gyalolechiaeformis and C. pseudocitrina are later synonyms of C. tominii. Arctic and North American sorediate specimens morphologically very close to C. tominii represent a separate lineage recently recognized as C. erichansenii. The North American Caloplaca nashii has a C. crenulatella-like phenotype but does not belong to the C. crenulatella complex. The identities of Caloplaca lacteoides and Caloplaca epigaea are not clear, but the latter may be a terricolous ecotype of one of the entities within C. crenulatella s. lat. A key to the European species of the group is provided.

The impact of incubation in saline solutions of different concentrations on the uptake and cellular location of essential elements (Na+, K+, Mg2+ and Ca2+), and its effects on membrane integrity and on the photosynthetic apparatus, were investigated in the lichen Ramalina canariensis Steiner. Saline incubation resulted in a rapid uptake of Na+ and Mg2+ in the cell wall fraction, whereas in the intracellular fraction the accumulation of Na+ was slower. No changes were observed for intracellular Mg2+, suggesting that no generalized membrane damage occurred. Concomitantly with the increase in intracellular Na+, there was a specific loss of K+ from the cell interior, indicating that membrane permeability may have been compromised. Incubation in a 100% artificial sea water solution reduced the maximum photochemical efficiency of Photosystem II (Fv/Fm) by 17% after 5 min, and this inhibition increased with incubation time. In samples incubated in 100% artificial sea water solution for 2 h followed by 2 h incubation in deionized water, ion distribution and Fv/Fm did not recover to control values. The present findings show the importance of determining the cellular location of elements when assessing their physiological impact. Results indicate that saline stress may irreversibly impair photosynthesis, thus compromising lichen vitality.

We used a genetic distance approach in conjunction with molecular phylogeny to establish species boundaries and detect cryptic lineages in the Parmotrema reticulatum – P. pseudoreticulatum complex. The phylogeny of specimens from a broad geographic distribution was reconstructed from the internal transcribed spacer region. Pairwise genetic distances were calculated and compared to an intraspecific range defined for the parmelioid lichens to circumscribe species-level groups. Our results showed that P. reticulatum and P. pseudoreticulatum are polyphyletic, being comprised of at least seven well-supported lineages. In contrast, the genetic distance approach revealed ten cryptic lineages within the P. reticulatum – P. pseudoreticulatum complex. Neither morphology nor geography was conclusive in attempting to corroborate these genetic lineages. However FST indices suggest significant genetic differentiation between these lineages. Our results suggest that the morphology-based circumscriptions underestimated species in Parmotrema and that, in some cases, genetic distances may be used as an additional tool to determine species boundaries in morphologically cryptic species complexes. The most significant contribution of the present study is the application of a fast and accurate method to identify problematic groups and candidate species using the ITS locus with a genetic distances approach.