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5 - The Viterbi Algorithm
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Appendix F - Earlier Applications of HiddenMarkov Chain Models
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3 - Hidden Markov Models
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7 - A New Markov Chain Model
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Appendix A - Higher-Order Chains
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9 - Hidden Semi-Markov Models
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8 - Semi-Markov Models
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Introduction to Hidden Semi-Markov Models
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PART II - MOLECULAR PHYLOGENETICS
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Contents
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Notation
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Index
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Appendix B - Algorithm Design and Analysis
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Appendix A - Primer on Biological Data and Evolution
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3 - Constructing Trees from True Subtrees
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Frontmatter
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PART I - BASIC TECHNIQUES
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1 - Brief Introduction to Phylogenetic Estimation
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9 - Multiple Sequence Alignment
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6 - Consensus and Agreement Trees
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