Skip to main content Accessibility help
×
Hostname: page-component-848d4c4894-nmvwc Total loading time: 0 Render date: 2024-06-19T05:16:51.833Z Has data issue: false hasContentIssue false

15 - Perspectives on future directions

Published online by Cambridge University Press:  05 March 2012

Suzanne Roy
Affiliation:
Université du Québec à Rimouski, Canada
Carole A. Llewellyn
Affiliation:
Plymouth Marine Laboratory
Einar Skarstad Egeland
Affiliation:
University of Nordland, Norway
Geir Johnsen
Affiliation:
Norwegian University of Science and Technology, Trondheim
Get access

Summary

Introduction

‘We are on the verge of a golden age.’

(Quote by Martin Lohr on xanthophyll research)

This chapter presents a diverse collection of perspectives covering recent discoveries and ‘crystal ball gazing’ on future directions. Detection and characterisation from a molecular level is covered through to monitoring phytoplankton dynamics and climate change at a regional and global Earth observation level. At a molecular level, perspectives are provided on our basic understanding of the role of pigments in photosynthesis and photoprotection incorporating the development of new analytical and ‘omics’ techniques. Applied perspectives are included on HAB detection, aquaculture and algal biotechnology. Phytoplankton pigment research continues to develop opening up many fascinating and exciting possibilities. These perspectives highlight how research on pigments acts as a linchpin across a diverse range of disciplines including microbial ecology, oceanography, limnology, remote sensing and applied phycology.

Type
Chapter
Information
Phytoplankton Pigments
Characterization, Chemotaxonomy and Applications in Oceanography
, pp. 609 - 624
Publisher: Cambridge University Press
Print publication year: 2011

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Aiken, J.Fishwick, J. R.Lavender, S.Barlow, R.Moore, G.Sessions, H.Bernard, S.Ras, J.Hardman-Mountford, N. J. 2007 Validation of MERIS reflectance and chlorophyll during the BENCAL cruise October, 2002: Preliminary validation of new products for phytoplankton functional types and photosynthetic parametersInt. J. Rem. Sens 28 497CrossRefGoogle Scholar
Aiken, J.Pradhan, Y.Barlow, R.Lavender, S.Poulton, A.Holligan, P.Hardman-Mountford, N. 2009 Phytoplankton pigments and functional types in the Atlantic Ocean: a decadal assessment, 1995–2005Deep-Sea Res. II 56 899CrossRefGoogle Scholar
Airs, R. L.Llewellyn, C. A. 2006 Improved detection and characterisation of fucoxanthin-type carotenoids: Novel pigments in (Prymnesiophyceae)J. Phycol 42 391CrossRefGoogle Scholar
Alia, A.Ganapathy, S.de Groot, H. J. M. 2009 Magic angle spinning (MAS) NMR: a new tool to study the spatial and electronic structure of photosynthetic complexesPhotosynth. Res 102 415CrossRefGoogle Scholar
Allen, A. E.LaRoche, J.Maheswari, U.Lommer, M.Schaner, N.Lopez, P. J.Firazzi, G.Fernie, A. R.Bowler, C. 2008 Whole-cell response of the pennate diatom to iron starvationPNAS 105 10438CrossRefGoogle ScholarPubMed
Allen, M. B. 1966 Distribution of the chlorophyllsThe ChlorophyllsVernon, L. P.Seely, G. B.New YorkAcadamic Press511CrossRefGoogle Scholar
Armbrust, V.Berges, J. A.Bowler, C.Green, B.Martinez, D. 2004 The genome of the diatom : ecology, evolution, and metabolismScience 306 79CrossRefGoogle ScholarPubMed
Béjà, O.Aravind, L.Koonin, E. V.Suzuki, M. T.Hadd, A.Nguyen, L. P.Jovanovich, S.Gates, C. M.Feldman, R. A.Spudich, J. L.Spudich, E. N.DeLong, E. F. 2000 Bacterial rhodopsin: Evidence for a new type of phototrophy in the seaScience 289 1902CrossRefGoogle Scholar
Béjà, O.Spudich, E. N.Spudich, J. L.Leclerc, M.DeLong, E. F. 2001 Proteorhodopsin phototrophy in the oceanNature 411 786CrossRefGoogle ScholarPubMed
Blot, N.Wu, X. J.Thomas, J. C.Zhang, J.Garczarek, L.Böhm, S.Tu, J. M.Zhou, M.Ploscher, M.Eichacker, L.Partensky, F.Scheer, H.Zhao, K. H. 2009 Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomeraseJ. Biol. Chem 284 9290CrossRefGoogle ScholarPubMed
Bondu, S.Kervarec, N.Deslandes, E.Pichon, R. 2008 The use of HRMAS NMR spectroscopy to study intra-cellular carbon/nitrogen ratio of (Rhodophyta)J. Appl. Phycol 20 673CrossRefGoogle Scholar
Bowler, C.Allen, A. E.Badger, J. H.Grimwood, J.Jabbari, K. 2008 The genome reveals the evolutionary history of diatom genomesNature 456 239CrossRefGoogle ScholarPubMed
Boyce, D. G.Lewis, M. R.Worm, B. 2010 Global phytoplankton decline over the past centuryNature 466 591CrossRefGoogle ScholarPubMed
Bröcker, M. J.Virus, S.Ganskow, S.Heathcote, P.Heinz, D. W.Schubert, W.-D.Jahn, D.Moser, J. 2008 ATP-driven reduction by dark-operative protochlorophyllide oxidoreductase from mechanistically resembles nitrogenase catalysisJ. Biol. Chem 283 10559CrossRefGoogle ScholarPubMed
Bröcker, M. J.Wätzlich, D.Uliczka, F.Virus, S.Saggu, M.Lendzian, F.Scheer, H.Rüdiger, W.Moser, J.Jahn, D. 2008 Substrate recognition of nitrogenase-like dark operative protochlorophyllide oxidoreductase from J. Biol. Chem 283 29873CrossRefGoogle Scholar
Brunner, E.Gröger, C.Lutz, K.Richthammer, P.Spinde, K.Sumper, M. 2009 Analytical studies of silica biomineralization: towards an understanding of silica processing by diatomsAppl. Microbiol. Biotechnol 84 607CrossRefGoogle ScholarPubMed
Cardozo, K. H. M.Guaratini, T.Barros, M. P.Falcão, V. R.Tonon, A. P.Lopes, N. P.Campos, S.Torres, M. A.Souza, A. O.Colepicolo, P.Pinto, E. 2007 Metabolites from algae with economic impactComp. Biochem. Physiol. Part C 146 60Google Scholar
Chauton, M. S.Optun, O. I.Bathen, T. F.Volent, Z.Gribbestad, I. S.Johnsen, G. 2003 HR MAS 1H NMR spectroscopy analysis of marine microalgal whole cellsMar. Ecol. Progr. Ser 256 57CrossRefGoogle Scholar
Chauton, M. S.Størseth, T. R.Johnsen, G. 2003 High-resolution magic angle spinning 1H NMR analysis of whole cells of (Bacillariophyceae): Broad range analysis of metabolic composition and nutritional valueJ. Appl. Phycol 15 533CrossRefGoogle Scholar
Chen, M.Schliep, M.Willows, R. D.Cai, Z.-L.Neilan, B. A.Scheer, H. 2010 A red-shifted chlorophyllScience 329 1318CrossRefGoogle ScholarPubMed
Chew, A. G. M.Frigaard, N.-U.Bryant, D. A. 2009 Mutational analysis of three bchH paralogs in (bacterio-)chlorophyll biosynthesis in Photosynth. Res 101 21CrossRefGoogle Scholar
Cornilescu, G.Ulijasz, A. T.Cornilescu, C. C.Markley, J. L.Vierstra, R. D. 2008 Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground stateJ. Mol. Biol 383 403CrossRefGoogle ScholarPubMed
Cottrell, M. T.Mannino, A.Kirchman, D. L. 2006 Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific GyreAppl. Environ. Microbiol 72 557CrossRefGoogle ScholarPubMed
Dandler, J.Wilhelm, B.Scheer, H. 2010 Distribution of chlorophyll- and bacteriochlorophyll-derived photosensitizers in human blood plasma. Photobiol 86 182CrossRefGoogle ScholarPubMed
Dupont, S.Wilson, K.Obst, O.Sköld, H.Nakano, H.Thorndyke, M. C. 2007 Marine ecological genomics: when genomics meets marine ecologyMar. Ecol. Prog. Ser 332 257CrossRefGoogle Scholar
Egeland, E. S.Guillard, R. R. L.Liaaen Jensen, S. 1997 Additional carotenoid prototype representatives and a general chemosystematic evaluation of carotenoids in Prasinophyceae (Chlorophyta)Phytochemistry 44 1087CrossRefGoogle Scholar
Fujita, Y.Bauer, C. E. 2002 The light-independent protochlorophyllide reductase: a nitrogenase-like enzyme catalyzing a key reaction for greening in the darkThe Porphyrin HandbookKadish, K. M.Smith, K. M.Guilard, R.AmsterdamAcademic Press109Google Scholar
Ganapathy, S.Oostergetel, G. T.Wawrzyniak, P. K.Reus, M.Gomez Maqueo Chew, A.Buda, F.Boekema, E. J.Bryant, D. A.Holzwarth, A. R.de Groot, H. J. 2009 Alternating syn-anti bacteriochlorophylls form concentric helical nanotubes in chlorosomesProc. Natl. Acad. Sci. USA 106 8525CrossRefGoogle ScholarPubMed
Gao, C.Xiong, W.Zhang, Y.Yuan, W.Wu, Q. 2008 Rapid quantitation of lipid in microalgae by time-domain nuclear magnetic resonanceJ. Microbiol. Methods 75 437CrossRefGoogle ScholarPubMed
Hooker, S. B.Van Heukelem, L.Thomas, C. S.Claustre, H.Ras, J.Schlüter, L.Clementson, L.Van der Linde, D.Eker-Develi, E.Berthon, J.-F.Barlow, R.Sessions, H.Perl, J.Trees, C. 2009 The Third SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-3)GreenbeltNASA Goddard Space Flight CenterGoogle Scholar
Ikeuchi, M.Ishizuka, T. 2008 Cyanobacteriochromes: a new superfamily of tetrapyrrole-binding photoreceptors in cyanobacteriaPhotochem. Photobiol. Sci 7 1159CrossRefGoogle ScholarPubMed
Kashiyama, Y.Miyashita, H.Ohkubo, N.Ogawa, O.Chikaraishi, Y.Takano, Y.Suga, H.Toyofuku, T.Nomaki, H.Kitazato, H.Nagata, T.Ohkouchi, N. 2008 Evidence of global chlorophyll Science 321 658CrossRefGoogle ScholarPubMed
Klonowski, W. M.Fearns, P. R. C. S.Lynch, M. J. 2007 Retrieving key benthic cover types and bathymetry from hyperspectral imageryJ. Appl. Remote Sens 1 011505CrossRefGoogle Scholar
Kolber, Z. S.Van Dover, C. L.Niederman, R. A.Falkowski, P. G. 2000 Bacterial photosynthesis in surface waters of the open oceanNature 407 177Google ScholarPubMed
Kolber, Z. S.Plumley, F. G.Lang, A. S.Beatty, J. T.Blankenship, R. E.VanDover, C. L.Vetriani, C.Koblizek, M.Rathgeber, C.Falkowski, P. G. 2001 Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the oceanScience 292 2492CrossRefGoogle ScholarPubMed
Kupka, M.Zhang, J.Fu, W.-L.Tu, J.-M.Böhm, S.Su, P.Chen, Y.Zhou, M.Scheer, H.Zhao, K.-H. 2009 Catalytic mechanism of S-type phycobiliprotein lyase: Chaperone-like action and functional amino acid residuesJ. Biol. Chem 284 36405CrossRefGoogle ScholarPubMed
Küpper, H.Küpper, F. C.Spiller, M. 2006 [Heavy metal]-chlorophylls formed during heavy metal stress and degradation products formed during digestion, extraction and storage of plant materialChlorophylls and Bacteriochlorophylls: Biochemistry, Biophysics, Functions and ApplicationsGrimm, B.Porra, R. J.Rüdiger, W.Scheer, H.DordrechtSpringer67CrossRefGoogle Scholar
Lami, R.Cottrell, M. T.Ras, J.Ulloa, O.Obernosterer, I.Claustre, H.Kirchman, D. L.Lebaron, P. 2007 High abundances of aerobic anoxygenic photosynthetic bacteria in the South Pacific OceanAppl. Environ. Microbiol 73 4198CrossRefGoogle ScholarPubMed
Le Quéré, C.Harrison, S. P.Prentice, C. I.Buitenhuis, E. T.Aumonts, O.Bopps, L.Claustre, H.Da Cunha, L. C.Geider, R.Giraud, X.Klaas, C.Kohfeld, K. E.Legendre, L.Manizza, M.Platt, T.Rivkin, R. B.Sathyendranath, S.Uitz, J.Watson, A. J.Wolf-Gladrow, D. 2005 Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry modelsGlobal Change Biol 11 2016Google Scholar
Miglietta, M. L.Lamanna, R. 2006 1H HR-MAS NMR of carotenoids in aqueous samples and raw vegetablesMagn. Res. Chem 44 675CrossRefGoogle ScholarPubMed
Miller, C. A.Leonard, H. S.Pinsky, I. G.Turner, B. M.Williams, S. R.Harrison, L.Fletcher, A. F.Shen, G.Bryant, D. A.Schluchter, W. M. 2008 Biogenesis of Phycobiliproteins: III. CpcM is the asparagine methyltransferase for phycobiliprotein beta-subunits in cyanobacteriaJ. Biol. Chem 283 19293CrossRefGoogle ScholarPubMed
Moser, S.Ulrich, M.Müller, T.Kräutler, B. 2008 A yellow chlorophyll catabolite is a pigment of the fall coloursPhotochem. Photobiol. Sci 7 1577CrossRefGoogle ScholarPubMed
Moser, S.Müller, T.Holzinger, A.Lütz, C.Jockusch, S.Turro, N. J.Kräutler, B. 2009 Fluorescent chlorophyll catabolites in bananas light up blue halos of cell deathProc. Natl. Acad. Sci. USA 106 15538CrossRefGoogle ScholarPubMed
Moser, S.Müller, T.Oberhuber, M.Kräutler, B. 2009 Chlorophyll catabolites – Chemical and structural footprints of a fascinating biological phenomenonEur. J. Org. Chem 2009 21CrossRefGoogle ScholarPubMed
Nair, A.Sathyendranath, S.Platt, T.Morales, J.Stuart, V.Forget, M. -H.Devred, E.Bouman, H. 2008 Remote sensing of phytoplankton functional typesRemote Sens. Environ 112 3366CrossRefGoogle Scholar
Narikawa, R.Muraki, N.Shiba, T.Ikeuchi, M.Kurisu, G. 2009 Crystallization and preliminary X-ray studies of the chromophore-binding domain of cyanobacteriochrome AnPixJ from sp. PCC 7120Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun 65 159CrossRefGoogle ScholarPubMed
Nomata, J.Mizoguchi, T.Tamiaki, H.Fujita, Y. 2006 A second nitrogenase-like enzyme for bacteriochlorophyll biosynthesis: reconstitution of chlorophyllide reductase with purified X-protein (BchX) and YZ-protein (BchY-BchZ) from J. Biol. Chem 281 15021CrossRefGoogle Scholar
Nymark, M.Valle, K. C.Brembu, T.Hancke, K.Winge, P.Andresen, K.Johnsen, G.Bones, A. M. 2009 An integrated analysis of molecular acclimation to high light in the marine diatom PloS ONE 11 e7743CrossRefGoogle Scholar
Oberhuber, M.Berghold, J.Kräutler, B. 2008 Chlorophyll breakdown by a biomimetic routeAngew. Chem. Int. Ed 47 3057CrossRefGoogle ScholarPubMed
Peers, G.Truong, T. B.Ostendorf, E.Busch, A.Elrad, D.Grossman, A. R.Hippler, M.Niyogi, K. K. 2009 An ancient light-harvesting protein is critical for the regulation of algal photosynthesisNature 462 518CrossRefGoogle ScholarPubMed
Raja, R.Hemaiswarya, S.Kumar, N. A.Sridhar, S.Rengasamy, R. 2008 A perspective on the biotechnological potential of microalgaeCrit. Rev. Microbiol 34 77CrossRefGoogle ScholarPubMed
Rocchetta, I.Küpper, H. 2009 Chromium- and copper-induced inhibition of photosynthesis in analysed on the single-cell level by fluorescence kinetic microscopyNew Phytol 182 405CrossRefGoogle ScholarPubMed
Sakuraba, Y.Tanaka, R.Yamasato, A.Tanaka, A. 2009 Determination of a chloroplast degron in the regulatory domain of chlorophyllide oxygenaseJ. Biol. Chem 284 36689CrossRefGoogle ScholarPubMed
Sathyendranath, S.Watts, L.Devred, E.Platt, T.Caverhill, C.Maas, H. 2004 Discrimination of diatoms from other phytoplankton using ocean-colour dataMar. Ecol. Prog. Ser 272 59CrossRefGoogle Scholar
Schluchter, W. M.Shen, G.Alvey, R. M.Biswas, A.Saunée, N.Williams, S. R.Miller, C. A.Bryant, D. A. 2010 Phycobiliprotein biosynthesis in cyanobacteria: structure and function of enzymes involved in post-translational modificationRecent Advances in Phototrophic ProkaryotesHallenbeck, P. C.New YorkSpringer211CrossRefGoogle Scholar
Shen, G.Leonard, H. S.Schluchter, W. M.Bryant, D. A. 2008 CpcM posttranslationally methylates asparagine-71/72 of phycobiliprotein beta subunits in sp. strain PCC 7002 and sp. strain PCC 6803J. Bacteriol 190 4808CrossRefGoogle ScholarPubMed
Sieracki, M. E.Gilg, I. C.Their, E. C.Poulton, N. J.Goericke, R. 2006 Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest AtlanticLimnol. Oceanogr 51 38CrossRefGoogle Scholar
Størseth, T. R.Hansen, K.Skjermo, J.Krane, J. 2004 Characterization of a β-D-(1→3)-glucan from the marine diatom by high-resolution magic-angle spinning NMR spectroscopy on whole algal cellsCarbohydrate Res 339 421CrossRefGoogle ScholarPubMed
Szymczak-Żyła, M.Kowalewska, G.Louda, J. W. 2008 The influence of microorganisms on chlorophyll  degradation in the marine environmentLimnol. Oceanogr 53 851CrossRefGoogle Scholar
Tsien, R. Y. 2009 Constructing and exploiting the fluorescent protein paintbox (Nobel Lecture)Angew. Chem., Int. Ed 48 5612CrossRefGoogle Scholar
Ulijasz, A. T.Cornilescu, G.von Stetten, D.Cornilescu, C.Velazquez Escobar, F.Zhang, J.Stankey, R. J.Rivera, M.Hildebrandt, P.Vierstra, R. D. 2009 The cyanochromes: Blue-green photoreversible photoreceptors defined by a stable double cysteine linkage to a phycoviolobilin-type chromophoreJ. Biol. Chem 284 29757CrossRefGoogle ScholarPubMed
Volent, Z.Johnsen, G.Sigernes, F. 2007 Kelp forest mapping by use of airborne hyperspectral imagerJ. Appl. Remote Sens 1 011503Google Scholar
Volent, Z.Johnsen, G.Sigernes, F. 2009 Microscopic hyperspectral imaging used as bio-optical taxonomic tool for micro- and macroalgaeAppl. Optics 48 4170CrossRefGoogle ScholarPubMed
Wätzlich, D. 2009 Nitrogenase-Like Enzymes of Chlorophyll and Bacteriochlorophyll BiosynthesisDissertationTechnische Universität BraunschweigGoogle Scholar
Wätzlich, D.Brocker, M. J.Uliczka, F.Ribbe, M.Virus, S.Jahn, D.Moser, J. 2009 Chimeric nitrogenase-like enzymes of (bacterio)chlorophyll biosynthesisJ. Biol. Chem 284 15530CrossRefGoogle ScholarPubMed
Yoshii, Y.Takaichi, S.Maoka, T.Suda, S.Sekiguchi, H.Nakayama, T.Inouye, I. 2005 Variation of siphonaxanthin series among the genus (Prasinophyceae, Chlorophyta), including a novel primary methoxy carotenoidJ. Phycol 41 827CrossRefGoogle Scholar
Zhang, J.Wu, X. J.Wang, Z. B.Chen, Y.Wang, X.Zhou, M.Scheer, H.Zhao, K. H. 2010 Fused-gene approach to photoswitchable and fluorescent biliproteinsAngew. Chem. Int. Ed 49 5456CrossRefGoogle ScholarPubMed

Save book to Kindle

To save this book to your Kindle, first ensure coreplatform@cambridge.org is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

Available formats
×