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Chapter F4 - Single-molecule detection

from Part F - Optical microscopy

Published online by Cambridge University Press:  05 November 2012

Igor N. Serdyuk
Affiliation:
Institute of Protein Research, Moscow
Nathan R. Zaccai
Affiliation:
University of Bristol
Joseph Zaccai
Affiliation:
Institut de Biologie Structurale, Grenoble
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Summary

Historical review

1924

The history of the study of single molecules in physics starts with the well-known oil-drop experiments of R. Milliken, in which the charge-to-mass ratio of a single electron was determined. It may be assumed that the history of studying single molecules in biology started in 1950s when researchers were able to detect the presence of massive molecules such as DNA using conventional electron microscopes in high vacuum. The advent of the scanning tunnelling microscope in the 1980s made it possible to image individual molecules and atoms on the surface. However, the observation of individual molecules within solids or in solution remained an extremely difficult and unsolved problem.

1961

B. Rotman was the first to use fluorescence detection for single-molecule studies in solution. Using a fluorogenic substrate, he measured the presence of a single β-D-galactosidase molecule by detecting the fluorescent product molecules accumulated in a microdroplet through enzymatic amplification. He did not achieve single-molecule sensitivity but clearly demonstrated the great potential of fluorescence detection. In 1976 T. Hirschfeld reported the use of fluorescence microscopy to detect single antibody molecules tagged with 80–100 fluorescein molecules under evanescent-wave excitation.

1989

W. Moerner's group first used a laser to see single, small organic molecules trapped inside a transparent host crystal. In 1990 M. Orrit's group showed that very high sensitivity at the single-molecule level can be achieved by probing ‘guest’ molecules in solid hosts at cryogenic temperatures.

Type
Chapter
Information
Methods in Molecular Biophysics
Structure, Dynamics, Function
, pp. 683 - 708
Publisher: Cambridge University Press
Print publication year: 2007

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References

Weiss, S. (1999). Fluorescence spectroscopy of single biomolecules. Science, 283, 1676–1683.CrossRefGoogle ScholarPubMed
Gimzewski, J. K., and Joachim, C. (1999). Nanoscale science of single molecules using local probes. Science, 283, 1683–1688.CrossRefGoogle ScholarPubMed
Nie, S., and Zare, R. N. (1997). Optical detection of single molecule. Annu. Rev. Biophys. Biomol. Str., 26, 567–596.CrossRefGoogle Scholar
Weiss, S. (1999). Fluorescence spectroscopy of single biomolecules. Science, 283, 1676–1683.CrossRefGoogle ScholarPubMed
Moerener, W. E., and Orrit, M. (1999). Illuminating single molecules in condensed matter. Science, 283, 1673–1700.Google Scholar
Nie, S., and Zare, R. N. (1997). Optical detection of single molecule. Annu. Rev. Biophys. Biomol. Str., 26, 567–596.CrossRefGoogle Scholar
Eigen, M., and Rigler, R. (1994). Sorting single molecules: Application to diagnostics and evolutionary biotechnology. Natl. Acad. Sci. USA, 91, 5740–5747.CrossRefGoogle ScholarPubMed
Betzig, E., and Chichester, R. J. (1993). Single molecules observed by near-field scanning optical microscopy. Science, 262, 1422–1425.CrossRefGoogle ScholarPubMed
Nie, S., Chlu, D. T., and Zare, R. N. (1994). Probing individual molecules with confocal fluorescence microscopy. Science, 266, 1018–1021.CrossRefGoogle ScholarPubMed
Lu, H. P., Xun, L., and Xie, X. S. (1998). Single-molecule enzymatic dynamics. Science, 282, 1877–1882.CrossRefGoogle ScholarPubMed
Jia, Y., Sytnik, A., et al. (1997). Nonexponential kinetics of a single tRNAPhe molecule under physiological conditions. Proc. Natl. Acad. Sci. USA, 94, 7932–7936.CrossRefGoogle ScholarPubMed
Zhuang, X., Bartley, L. E., et al. (2000). A single-molecule study of RNA catalysis and folding. Science, 288, 2048–2051.CrossRefGoogle ScholarPubMed
Weiss, S. (1999). Fluorescence spectroscopy of single biomolecules. Science, 283, 1676–1683.CrossRefGoogle ScholarPubMed
Gimzewski, J. K., and Joachim, C. (1999). Nanoscale science of single molecules using local probes. Science, 283, 1683–1688.CrossRefGoogle ScholarPubMed
Nie, S., and Zare, R. N. (1997). Optical detection of single molecule. Annu. Rev. Biophys. Biomol. Str., 26, 567–596.CrossRefGoogle Scholar
Weiss, S. (1999). Fluorescence spectroscopy of single biomolecules. Science, 283, 1676–1683.CrossRefGoogle ScholarPubMed
Moerener, W. E., and Orrit, M. (1999). Illuminating single molecules in condensed matter. Science, 283, 1673–1700.Google Scholar
Nie, S., and Zare, R. N. (1997). Optical detection of single molecule. Annu. Rev. Biophys. Biomol. Str., 26, 567–596.CrossRefGoogle Scholar
Eigen, M., and Rigler, R. (1994). Sorting single molecules: Application to diagnostics and evolutionary biotechnology. Natl. Acad. Sci. USA, 91, 5740–5747.CrossRefGoogle ScholarPubMed
Betzig, E., and Chichester, R. J. (1993). Single molecules observed by near-field scanning optical microscopy. Science, 262, 1422–1425.CrossRefGoogle ScholarPubMed
Nie, S., Chlu, D. T., and Zare, R. N. (1994). Probing individual molecules with confocal fluorescence microscopy. Science, 266, 1018–1021.CrossRefGoogle ScholarPubMed
Lu, H. P., Xun, L., and Xie, X. S. (1998). Single-molecule enzymatic dynamics. Science, 282, 1877–1882.CrossRefGoogle ScholarPubMed
Jia, Y., Sytnik, A., et al. (1997). Nonexponential kinetics of a single tRNAPhe molecule under physiological conditions. Proc. Natl. Acad. Sci. USA, 94, 7932–7936.CrossRefGoogle ScholarPubMed
Zhuang, X., Bartley, L. E., et al. (2000). A single-molecule study of RNA catalysis and folding. Science, 288, 2048–2051.CrossRefGoogle ScholarPubMed

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