Skip to main content Accessibility help
×
Hostname: page-component-76fb5796d-25wd4 Total loading time: 0 Render date: 2024-04-25T21:07:35.700Z Has data issue: false hasContentIssue false

2 - The rice blast story: from genome sequence to function

from I - Comparative and functional fungal genomics

Published online by Cambridge University Press:  05 October 2013

R. A. Dean
Affiliation:
Center for Integrated Fungal Research Department of Plant Pathology 1200 Partners Building II Box 7251 North Carolina State University Raleigh NC 27695 USA
T. Mitchell
Affiliation:
North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA
R. Kulkarni
Affiliation:
RTI 3040 Cornwallis Road Research Triangle Park NC 27709 USA
N. Donofrio
Affiliation:
North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA
A. Powell
Affiliation:
North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA
Y. Y. Oh
Affiliation:
North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA
S. Diener
Affiliation:
North Carolina State University Department of Plant Pathology Campus Box 7253 Raleigh NC 27695–7253 USA
H. Pan
Affiliation:
RTI 3040 Cornwallis Road Research Triangle Park NC 27709 USA
D. Brown
Affiliation:
North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA
J. Deng
Affiliation:
North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA
I. Carbone
Affiliation:
North Carolina State University Department of Plant Pathology Campus Box 7244 Raleigh NC 27695–7244 USA
D. J. Ebbole
Affiliation:
Department of Plant Pathology and Microbiology Peterson Building Rm 120 MS# 2132 Texas A&M University College Station TX 77843–2132 USA
M. Thon
Affiliation:
Department of Computer Science 320C Peterson Building MS# 2132 Texas A&M University College Station TX 77843–2132 USA
M. L. Farman
Affiliation:
Department of Plant Pathology University of Kentucky 1405 Veterans Drive Lexington KY 40546–0312 USA
M. J. Orbach
Affiliation:
Department of Plant Pathology University of Arizona Forbes Room 105 PO Box 210036 Tucson AZ 85721–0036 USA
C. Soderlund
Affiliation:
Director of Bioinformatics Department of Plant Science 303 Forbes Building Tucson AZ 85721 USA
J-R. Xu
Affiliation:
Department of Botany and Plant Pathology 915 West State Street Purdue University West Lafayette IN 47906 USA
Y-H. Lee
Affiliation:
Seoul National University School of Agricultural Biotechnology Suwon 441–744 Korea
N. J. Talbot
Affiliation:
Department of Biological Sciences University of Exeter Hatherly Laboratories Prince of Wales Road Exeter EX4 4PS UK
S. Coughlan
Affiliation:
Agilent Technologies Inc. Little Falls Site 2850 Centerville Road Wilmington DE 19808 USA
J. E. Galagan
Affiliation:
The Broad Institute Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge MA 02139–4307 USA
B. W. Birren
Affiliation:
The Broad Institute Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge MA 02139–4307 USA
G. D. Robson
Affiliation:
University of Manchester
Pieter van West
Affiliation:
University of Aberdeen
Geoffrey Gadd
Affiliation:
University of Dundee
Get access

Summary

Introduction

Rice blast disease, caused by the filamentous fungus Magnaporthe grisea, is a serious and recurrent problem in all rice-growing regions of the world (Talbot, 2003; Valent & Chumley, 1991). It is estimated that each year enough rice is destroyed by rice blast disease to feed 60 million people. Control of this disease is difficult; new host-specific forms develop quickly to overcome host resistance and chemical control is typically not cost effective (Ou, 1987). Infections occur when fungal spores land and attach themselves to leaves using a special adhesive released from the tip of each spore (Hamer et al., 1988). The germinating spore develops an appressorium, a specialized infection cell, which generates enormous turgor pressure – up to 8 MPa – that ruptures the leaf cuticle allowing invasion of the underlying leaf tissue (de Jong et al., 1997; Dean, 1997). Subsequent colonization of the leaf produces disease lesions from which the fungus sporulates and spreads to new plants. When rice blast infects young rice seedlings, whole plants often die, while spread of the disease to the stems, nodes or panicle of older plants results in nearly total loss of the rice grain. Recent reports have further shown that the fungus has the capacity to infect plant roots (Sesma & Osbourn, 2004). Different host-limited forms of Magnaporthe also infect a broad range of grass species including wheat, barley and millet.

Type
Chapter
Information
Publisher: Cambridge University Press
Print publication year: 2007

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Bruno, K. S., Tenjo, F., Li, L., Hamer, J. E. & Xu, J. R. (2004). Cellular localization and role of kinase activity of PMK1 in Magnaporthe grisea. Eukaryotic Cell, 3, 1525–32.CrossRefGoogle ScholarPubMed
Calabrese, P. P., Chakravarty, S. & Vision, T. J. (2003). Fast identification and statistical evaluation of segmental homologies in comparative maps. Bioinformatics, 19, 74–80.CrossRefGoogle ScholarPubMed
Chao, C. C. T. & Ellingboe, A. H. (1991). Selection for mating competence in Magnaporthe grisea pathogenic to rice. Canadian Journal of Botany, 69, 2130–4.CrossRefGoogle Scholar
Conlon, E. M., Liu, X. S., Lieb, J. D. & Liu, J. S. (2003). Integrating regulatory motif discovery and genome-wide expression analysis. Proceedings of the National Academy of Sciences USA, 100, 3339–44.CrossRefGoogle ScholarPubMed
Jong, J. C., McCormack, B. J., Smirnoff, N. & Talbot, N. J. (1997). Glycerol generates turgor in rice blast. Nature, 389, 244–5.CrossRefGoogle Scholar
Dean, R. A. (1997). Signal pathways and appressorium morphogenesis. Annual Review of Phytopathology, 35, 211–34.CrossRefGoogle ScholarPubMed
Dean, R. A., Talbot, N. J., Ebbole, D. J., Farman, M. L., Mitchell, T. K., Orbach, M. J., Thon, M., Kulkarni, R., Xu, J. R., Pan, H., Read, N. D., Lee, Y. H., Carbone, I., Brown, D., Oh, Y. Y., Donofrio, N., Jeong, J. S., Soanes, D. M., Djonovic, S., Kolomiets, E., Rehmeyer, C., Li, W., Harding, M., Kim, S., Lebrun, M. H., Bohnert, H., Coughlan, S., Butler, J., Calvo, S., Ma, L. J., Nicol, R., Purcell, S., Nusbaum, C., Galagan, J. E. & Birren, B. W. (2005). The genome sequence of the rice blast fungus Magnaporthe grisea. Nature, 434, 980–6.CrossRefGoogle ScholarPubMed
Donofrio, N., Rajagopalon, R., Brown, D., Diener, S., Windham, D., Nolin, S., Floyd, A., Mitchell, T., Galadima, N., Tucker, S., Orbach, M. J., Patel, G., Farman, M., Pampanwar, V., Soderlund, C., Lee, Y. H. & Dean, R. A. (2005). ‘PACLIMS’ a component LIM system for high-throughput functional genomic analysis. BMC Bioinformatics, 6, 94.CrossRefGoogle ScholarPubMed
Ebbole, D. J., Jin, Y., Thon, M., Pan, H., Bhattarai, E., Thomas, T. & Dean, R. (2004). Gene discovery and gene expression in the rice blast fungus, analysis of expressed sequence tags. Molecular Plant–Microbe Interactions, 17, 1337–47.CrossRefGoogle ScholarPubMed
Galagan, J. E., Calvo, S. E., Borkovich, K. A., Selker, E. U., Read, N. D., Jaffe, D., FitzHugh, W., Ma, L. J., Smirnov, S., Purcell, S., Rehman, B., Elkins, T., Engels, R., Wang, S., Nielsen, C. B., Butler, J., Endrizzi, M., Qui, D., Ianakiev, P., Bell-Pedersen, D., Nelson, M. A., Werner-Washburne, M., Selitrennikoff, C. P., Kinsey, J. A., Braun, E. L., Zelter, A., Schulte, U., Kothe, G. O., Jedd, G., Mewes, W., Staben, C., Marcotte, E., Greenberg, D., Roy, A., Foley, K., Naylor, J., Stange-Thomann, N., Barrett, R., Gnerre, S., Kamal, M., Kamvysselis, M., Mauceli, E., Bielke, C., Rudd, S., Frishman, D., Krystofova, S., Rasmussen, C., Metzenberg, R. L., Perkins, D. D., Kroken, S., Cogoni, C., Macino, G., Catcheside, D., Li, W., Pratt, R. J., Osmani, S. A., DeSouza, C. P., Glass, L., Orbach, M. J., Berglund, J. A., Voelker, R., Yarden, O., Plamann, M., Seiler, S., Dunlap, J., Radford, A., Aramayo, R., Natvig, D. O., Alex, L. A., Mannhaupt, G., Ebbole, D. J., Freitag, M., Paulsen, I., Sachs, M. S., Lander, E. S., Nusbaum, C. & Birren, B. (2003). The genome sequence of the filamentous fungus Neurospora crassa. Nature, 422, 859–68.CrossRefGoogle ScholarPubMed
Hamer, J. E., Howard, R. J., Chumley, F. G. & Valent, B. (1988). A mechanism for surface attachment in spores of a plant pathogenic fungus. Science, 239, 288–90.CrossRefGoogle ScholarPubMed
Kang, S., Lebrun, M.-H., Farrall, L. & Valent, B. (2001). Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene. Molecular Plant–Microbe Interactions, 14, 671–4.CrossRefGoogle Scholar
Kulkarni, R. D., Kelkar, H. S. & Dean, R. A. (2003). An eight-cysteine-containing CFEM domain unique to a group of fungal membrane proteins. Trends in Biochemical Sciences, 28, 118–21.CrossRefGoogle ScholarPubMed
Kulkarni, R. D., Thon, M. R., Pan, H. & Dean, R. A. (2005). Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea. Genome Biology, 6, R24.CrossRefGoogle ScholarPubMed
Martin, S. L., Blackmon, B. P., Rajagopalan, R., Houfek, T. D., Sceeles, R. G., Denn, S. O., Mitchell, T. K., Brown, D. E., Wing, R. A. & Dean, R. A. (2002). MagnaportheDB, a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Research, 30, 121–4.CrossRefGoogle ScholarPubMed
Nimchuk, Z., Eulgem, T., Holt, B. F. III & Dangl, J. L. (2003). Recognition and response in the plant immune system. Annual Review of Genetics, 37, 579–609.CrossRefGoogle ScholarPubMed
Ou, S. H. (1987). In Rice Diseases. United Kingdom: Commonwealth of Agricultural Bureaux, pp. 109–200.Google Scholar
Padovan, A. C., Sanson, G. F., Brunstein, A. & Briones, M. R. (2005). Fungi evolution revisited, application of the penalized likelihood method to a bayesian fungal phylogeny provides a new perspective on phylogenetic relationships and divergence dates of ascomycota groups. Journal of Molecular Evolution, 60, 726–35.CrossRefGoogle ScholarPubMed
Park, G., Xue, C., Zheng, L., Lam, S. & Xu, J. R. (2002). MST12 regulates infectious growth but not appressorium formation in the rice blast fungus Magnaporthe grisea. Molecular Plant–Microbe Interactions, 15, 183–92.CrossRefGoogle Scholar
Prak, E. T., Dodson, A. W., Farkash, E. A. & Kazazian, H. H. Jr. (2003). Tracking an embryonic L1 retrotransposition event. Proceedings of the National Academy of Sciences USA, 100, 1832–7.CrossRefGoogle ScholarPubMed
Selker, E. U. (2002). Repeat-induced gene silencing in fungi. Advances in Genetics, 46, 439–50.Google ScholarPubMed
Sesma, A. & Osbourn, A. E. (2004) The rice leaf blast pathogen undergoes developmental processes typical of root-infecting fungi. Nature, 431, 582–6.CrossRefGoogle ScholarPubMed
Talbot, N. J. (2003). On the trail of a cereal killer, exploring the biology of Magnaporthe grisea. Annual Review of Microbiology, 57, 177–202.CrossRefGoogle ScholarPubMed
Thon, M. R., Martin, S. L., Goff, S., Wing, R. A. & Dean, R. A. (2004). BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea. Fungal Genetics and Biology, 41, 657–66.CrossRefGoogle Scholar
Valent, B. & Chumley, F. G. (1991). Molecular genetic analysis of the rice blast fungus Magnaporthe grisea. Annual Review of Phytopathology, 29, 443–67.CrossRefGoogle ScholarPubMed
Viaud, M. C., Balhadere, P. V. & Talbot, N. J. (2002). A cyclophilin acts as a virulence determinant during plant infection. Plant Cell, 14, 917–30.CrossRefGoogle ScholarPubMed
Xu, J. R. (2000). MAP kinases in fungal pathogens. Fungal Genetics and Biology, 31, 137–52.CrossRefGoogle ScholarPubMed
Zhu, H., Blackmon, B. P., Sasinowski, M. & Dean, R. A. (1999). Physical map and organization of chromosome 7 in the rice blast fungus, Magnaporthe grisea. Genome Research, 9, 739–50.Google ScholarPubMed
Zhu, H. & Snyder, M. (2003). Protein chip technology. Current Opinion in Chemical Biology, 7, 55–63.CrossRefGoogle ScholarPubMed

Save book to Kindle

To save this book to your Kindle, first ensure coreplatform@cambridge.org is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

  • The rice blast story: from genome sequence to function
    • By R. A. Dean, Center for Integrated Fungal Research Department of Plant Pathology 1200 Partners Building II Box 7251 North Carolina State University Raleigh NC 27695 USA, T. Mitchell, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, R. Kulkarni, RTI 3040 Cornwallis Road Research Triangle Park NC 27709 USA, N. Donofrio, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, A. Powell, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, Y. Y. Oh, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, S. Diener, North Carolina State University Department of Plant Pathology Campus Box 7253 Raleigh NC 27695–7253 USA, H. Pan, RTI 3040 Cornwallis Road Research Triangle Park NC 27709 USA, D. Brown, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, J. Deng, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, I. Carbone, North Carolina State University Department of Plant Pathology Campus Box 7244 Raleigh NC 27695–7244 USA, D. J. Ebbole, Department of Plant Pathology and Microbiology Peterson Building Rm 120 MS# 2132 Texas A&M University College Station TX 77843–2132 USA, M. Thon, Department of Computer Science 320C Peterson Building MS# 2132 Texas A&M University College Station TX 77843–2132 USA, M. L. Farman, Department of Plant Pathology University of Kentucky 1405 Veterans Drive Lexington KY 40546–0312 USA, M. J. Orbach, Department of Plant Pathology University of Arizona Forbes Room 105 PO Box 210036 Tucson AZ 85721–0036 USA, C. Soderlund, Director of Bioinformatics Department of Plant Science 303 Forbes Building Tucson AZ 85721 USA, J-R. Xu, Department of Botany and Plant Pathology 915 West State Street Purdue University West Lafayette IN 47906 USA, Y-H. Lee, Seoul National University School of Agricultural Biotechnology Suwon 441–744 Korea, N. J. Talbot, Department of Biological Sciences University of Exeter Hatherly Laboratories Prince of Wales Road Exeter EX4 4PS UK, S. Coughlan, Agilent Technologies Inc. Little Falls Site 2850 Centerville Road Wilmington DE 19808 USA, J. E. Galagan, The Broad Institute Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge MA 02139–4307 USA, B. W. Birren, The Broad Institute Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge MA 02139–4307 USA
  • Edited by G. D. Robson, University of Manchester, Pieter van West, University of Aberdeen, Geoffrey Gadd, University of Dundee
  • Book: Exploitation of Fungi
  • Online publication: 05 October 2013
  • Chapter DOI: https://doi.org/10.1017/CBO9780511902451.003
Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

  • The rice blast story: from genome sequence to function
    • By R. A. Dean, Center for Integrated Fungal Research Department of Plant Pathology 1200 Partners Building II Box 7251 North Carolina State University Raleigh NC 27695 USA, T. Mitchell, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, R. Kulkarni, RTI 3040 Cornwallis Road Research Triangle Park NC 27709 USA, N. Donofrio, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, A. Powell, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, Y. Y. Oh, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, S. Diener, North Carolina State University Department of Plant Pathology Campus Box 7253 Raleigh NC 27695–7253 USA, H. Pan, RTI 3040 Cornwallis Road Research Triangle Park NC 27709 USA, D. Brown, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, J. Deng, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, I. Carbone, North Carolina State University Department of Plant Pathology Campus Box 7244 Raleigh NC 27695–7244 USA, D. J. Ebbole, Department of Plant Pathology and Microbiology Peterson Building Rm 120 MS# 2132 Texas A&M University College Station TX 77843–2132 USA, M. Thon, Department of Computer Science 320C Peterson Building MS# 2132 Texas A&M University College Station TX 77843–2132 USA, M. L. Farman, Department of Plant Pathology University of Kentucky 1405 Veterans Drive Lexington KY 40546–0312 USA, M. J. Orbach, Department of Plant Pathology University of Arizona Forbes Room 105 PO Box 210036 Tucson AZ 85721–0036 USA, C. Soderlund, Director of Bioinformatics Department of Plant Science 303 Forbes Building Tucson AZ 85721 USA, J-R. Xu, Department of Botany and Plant Pathology 915 West State Street Purdue University West Lafayette IN 47906 USA, Y-H. Lee, Seoul National University School of Agricultural Biotechnology Suwon 441–744 Korea, N. J. Talbot, Department of Biological Sciences University of Exeter Hatherly Laboratories Prince of Wales Road Exeter EX4 4PS UK, S. Coughlan, Agilent Technologies Inc. Little Falls Site 2850 Centerville Road Wilmington DE 19808 USA, J. E. Galagan, The Broad Institute Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge MA 02139–4307 USA, B. W. Birren, The Broad Institute Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge MA 02139–4307 USA
  • Edited by G. D. Robson, University of Manchester, Pieter van West, University of Aberdeen, Geoffrey Gadd, University of Dundee
  • Book: Exploitation of Fungi
  • Online publication: 05 October 2013
  • Chapter DOI: https://doi.org/10.1017/CBO9780511902451.003
Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

  • The rice blast story: from genome sequence to function
    • By R. A. Dean, Center for Integrated Fungal Research Department of Plant Pathology 1200 Partners Building II Box 7251 North Carolina State University Raleigh NC 27695 USA, T. Mitchell, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, R. Kulkarni, RTI 3040 Cornwallis Road Research Triangle Park NC 27709 USA, N. Donofrio, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, A. Powell, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, Y. Y. Oh, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, S. Diener, North Carolina State University Department of Plant Pathology Campus Box 7253 Raleigh NC 27695–7253 USA, H. Pan, RTI 3040 Cornwallis Road Research Triangle Park NC 27709 USA, D. Brown, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, J. Deng, North Carolina State University Department of Plant Pathology Campus Box 7251 Raleigh NC 27695–7251 USA, I. Carbone, North Carolina State University Department of Plant Pathology Campus Box 7244 Raleigh NC 27695–7244 USA, D. J. Ebbole, Department of Plant Pathology and Microbiology Peterson Building Rm 120 MS# 2132 Texas A&M University College Station TX 77843–2132 USA, M. Thon, Department of Computer Science 320C Peterson Building MS# 2132 Texas A&M University College Station TX 77843–2132 USA, M. L. Farman, Department of Plant Pathology University of Kentucky 1405 Veterans Drive Lexington KY 40546–0312 USA, M. J. Orbach, Department of Plant Pathology University of Arizona Forbes Room 105 PO Box 210036 Tucson AZ 85721–0036 USA, C. Soderlund, Director of Bioinformatics Department of Plant Science 303 Forbes Building Tucson AZ 85721 USA, J-R. Xu, Department of Botany and Plant Pathology 915 West State Street Purdue University West Lafayette IN 47906 USA, Y-H. Lee, Seoul National University School of Agricultural Biotechnology Suwon 441–744 Korea, N. J. Talbot, Department of Biological Sciences University of Exeter Hatherly Laboratories Prince of Wales Road Exeter EX4 4PS UK, S. Coughlan, Agilent Technologies Inc. Little Falls Site 2850 Centerville Road Wilmington DE 19808 USA, J. E. Galagan, The Broad Institute Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge MA 02139–4307 USA, B. W. Birren, The Broad Institute Massachusetts Institute of Technology 77 Massachusetts Avenue Cambridge MA 02139–4307 USA
  • Edited by G. D. Robson, University of Manchester, Pieter van West, University of Aberdeen, Geoffrey Gadd, University of Dundee
  • Book: Exploitation of Fungi
  • Online publication: 05 October 2013
  • Chapter DOI: https://doi.org/10.1017/CBO9780511902451.003
Available formats
×