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Topology and dynamics of the 10 kDa C-terminal domain of DnaK in solution

Published online by Cambridge University Press:  01 February 1999

ERIC B. BERTELSEN
Affiliation:
Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403
HONGJUN ZHOU
Affiliation:
Macromolecular NMR Section, ABL-Basic Research Program, NCI-Frederick Cancer Research and Development Center, Frederick, Maryland 21702
DAVID F. LOWRY
Affiliation:
Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, Washington 99352
GREGORY C. FLYNN
Affiliation:
Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403
FREDERICK W. DAHLQUIST
Affiliation:
Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403
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Abstract

Hsp70 molecular chaperones contain three distinct structural domains, a 44 kDa N-terminal ATPase domain, a 17 kDa peptide-binding domain, and a 10 kDa C-terminal domain. The ATPase and peptide binding domains are conserved in sequence and are functionally well characterized. The function of the 10 kDa variable C-terminal domain is less well understood. We have characterized the secondary structure and dynamics of the C-terminal domain from the Escherichia coli Hsp70, DnaK, in solution by high-resolution NMR. The domain was shown to be comprised of a rigid structure consisting of four helices and a flexible C-terminal subdomain of approximately 33 amino acids. The mobility of the flexible region is maintained in the context of the full-length protein and does not appear to be modulated by the nucleotide state. The flexibility of this region appears to be a conserved feature of Hsp70 architecture and may have important functional implications. We also developed a method to analyze 15N nuclear spin relaxation data, which allows us to extract amide bond vector directions relative to a unique diffusion axis. The extracted angles and rotational correlation times indicate that the helices form an elongated, bundle-like structure in solution.

Type
Research Article
Copyright
© 1999 The Protein Society

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