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Opal-A and associated microbes from Wairakei, New Zealand: the first 300 days

Published online by Cambridge University Press:  05 July 2018

B. Y. Smith*
Affiliation:
Department of Geology, University of Auckland, Private Bag 92019, Auckland, New Zealand
S. J. Turner
Affiliation:
School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand
K. A. Rodgers
Affiliation:
Research Associate, Australian Museum, Sydney, NSW 2000, Australia

Abstract

All samples of silica sinter, <2 y old taken from the discharge drain of the Wairakei geothermal power station and the Rainbow Terrace of Orakei Korako, consist of non-crystalline opal-A. This silica phase deposits directly upon the concrete drain wall and filamentous templets, extending from this wall, afforded by the microbial community present in the drain, whose nature was determined by a culture- independent strategy that entailed construction, fingerprinting and sequencing of a 16S clone library. The bacterial community is dominated by five major groups of organisms, present in approximately equal proportions, and which account for ∼50% of the community. None of the 16S sequences from these dominant groups yielded a perfect match with 16S sequences for named organisms in the international databases. However one dominant group clusters with Hydrogenophilus thermoluteus, a thermophilic filamentous bacterium, and two cluster with putatively thermophilic members of the Cyanobacteria and green non-sulphur bacteria respectively. Initial opal-A deposits rapidly as agglomerations of silica nanospheres that, in turn, form chains of coalesced, oblate, microspheres <0.4 x 0.2 mm about the barbicel-like filaments, to produce a mat of fine woven strands. The majority of individual filaments are <8 μm long and 0.8 mm wide but may be up to 55 mm long by 1 mm wide. Where laminar flow dominates, most strands develop parallel to the drain current but some strands crisscross while others protrude above the mat surface. Where flow is turbulent, strands lack preferred orientation and some adopt a helical form. In general, following deposition, the values of the scattering broadband at half (FWHM) and three quarters (FWTM) of the maximum intensity decrease with increasing sample age. The behaviour of the band at one quarter maximum intensity (FWQM) is less consistent, but, in general, the youngest sinters possess the highest FWQM, FWHM and FWTM values that prove independent of fabric type. Opal-A silica matures following its removal from the parent fluid, especially where the sinter surface is filmed by water. A continual movement of silica is shown by a second generation of microspheres formed on the silica mat surface, by an increase in size of the initial microspheres, and by an increase in maximum intensity of the X-ray scattering broadbands. Similar silica aging behaviour occurs among young sinters developed upon microbial mats at Orakei Korako. The deposition and aging processes accord with the known behaviour of juvenile opaline silica in both natural and artificial systems whose pH, temperature and dissolved salt content are similar to Wairakei and Rainbow terrace: gelling of silica is favoured by the high pH (∼8.3) and temperature (∼60°C) of the Wairakei discharge fluid but the high dissolved salt content of the water (Na+ = 930 μg/g, Ca2+ = 12 μg/g, Cl = 1500 μg/g) and abundant microbial community facilitate rapid and copious flocculation of solid silica within the drain, in contrast to the slower accumulation on the natural sinter terrace at lower temperature (30—45°C) from less saline dilute bicarbonate-chloride waters (Na+ = 180 μg/g, Ca2+ = 0.2 μg/g, Cl = 400 μg/g, pH = 8.1).

Type
Research Article
Copyright
Copyright © The Mineralogical Society of Great Britain and Ireland 2003

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References

Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403410.CrossRefGoogle ScholarPubMed
Amann, R.I., Ludwig, W. and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews, 59, 143169.CrossRefGoogle ScholarPubMed
Blackall, L.L., Hayward, A.C., Sly, L.I. (1985) Cellulolytic and dextranolytic Gram-negative bacteria: revival of the genus Cellvibrio. Journal of Applied Bacteriology, 59, 8197.CrossRefGoogle Scholar
Blank, C.E., Pace, N.R. and Cady, S.L. (1999) A molecular biogeographic comparison of microbial communities in near boiling silica-depositing Yellowstone thermal springs; relating communities to siliceous sinter textures. Geological Society of America Annual Meeting, Denver Colorado, Abstracts with Programs 31 (7), 325.Google Scholar
Blatt, H., Middleton, G. and Murray, R. (1980) Origins of Sedimentary Rocks 2nd edition. Prentice-Hall, New Jersey, USA.Google Scholar
Brosius, J., Dull, T.L., Sleeter, D.D. and Noller, H.F. (1981) Gene organisation and primary structure of a ribosomal RNA operon from Escherichia coli. Journal of Molecular Biology, 148, 107127.Google Scholar
Cady, S.L. and Farmer, J.D. (1996) Fossilization processes in siliceous thermal springs: trends in preservation along thermal gradients. Pp. 150173 in: Evolution of Hydrothermal Ecosystems on Earth (and Mars?). Ciba Foundation Symposium, Wiley, Chichester, UK.Google Scholar
Farmer, J.D. (2000) Hydrothermal systems: doorways to early biosphere evolution. GSA Today, 10, 19.Google Scholar
Herdianita, N.R., Browne, P.R.L., Rodgers, K.A. and Campbell, K.A. (2000a) Mineralogical and morphological changes accompanying aging of siliceous sinter and silica residue. Mineralium Deposita, 35, 4862.CrossRefGoogle Scholar
Herdianita, N.R., Rodgers, K.A. and Browne, P.R.L. (2000b) Routine procedures for characterising modern and ancient silica sinter deposits. Geothermics, 29, 6581.CrossRefGoogle Scholar
Holt, J.G., Krieg, N.R., Sneath, P.H.A., Staley, J.T. and Williams, S.T. (editors) (1993) Bergey’s Manual of Determinative Bacteriology 9th edition. Williams and Wilkins, Maryland, USA, 787 pp.Google Scholar
Hugenholtz, P., Pitulle, C., Hershberger, K.L. and Pace, N.R. (1998) Novel division level bacterial diversity in a Yellowstone hot spring. Applied and Environmental Microbiology, 180, 366376.Google Scholar
Iler, R.K. (1979) The Chemistry of Silica: Solubility, Polymerization, Colloid and Surface Properties, and Biochemistry. Wiley-Interscience, New York, 866pp.Google Scholar
Inagaki, F., Hayashi, S., Doi, K., Motomura, Y., Izawa, E. and Ogata, S. (1997) Microbial participation in the formation of siliceous deposits from geothermal water and analysis of the extremely thermophilic bacterial community. FEMS Microbiology Ecology, 24, 4148.CrossRefGoogle Scholar
Inagaki, F., Yokoyama, T., Doi, K., Izawa, E. and Ogata, S. (1998) Bio-deposition of amorphous silica by an extremely thermophilic bacterium Thermus spp. Bioscience, Biotechnology and Biochemistry, 62, 12711272.CrossRefGoogle ScholarPubMed
Inagaki, F., Motomura, Y., Doi, K., Taguchi, S., Izawa, E., Lowe, D.R. and Ogata, S. (2001) Silicified microbial community at Steep Cone Hot Spring, Yellowstone National Park. Microbes and Environments, 16, 125130.CrossRefGoogle Scholar
Landmesser, M. (1995) Mobilität durch Metastabilität: Si〇2 Transport und Akkumulation bei niedrigen Temperaturen. Chemie der Erde, 55, 149176.Google Scholar
Lloyd, E.F. (1972) Geology and hot springs of Orakeikorako. New Zealand Geological Bulletin, 85, 1164.Google Scholar
Miller, D.N., Bryant, J.E., Madsen, E.L. and Ghiorse, W.C. (1999) Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Applied and Environmental Microbiology, 65, 47154724.CrossRefGoogle ScholarPubMed
Rodgers, K.A. (2000) Research on silica sinters. Mineralogical Society Bulletin, 126, 1617.Google Scholar
Sambrook, J. and Russell, D.W. (2001) Molecular Cloning: A Laboratory Manual, 1-3, 3rd edition. Cold Spring Harbor Laboratory Press, New York.Google Scholar
Smith, D.K. (1998) Opal, cristobalite, and tridymite: noncrystallinity versus crystallinity, nomenclature of the silica minerals and bibliography. Powder Diffraction, 13, 219.CrossRefGoogle Scholar
Sunna, A. and Bergquist, P.L. (2001) A gene encoding a novel extremely thermostable 1,4-beta-xylanase isolated from an environmental DNA sample from Kuirau Park, Rotorua, New Zealand. GenBank Accession number AF402975.Google Scholar
Weed, W.H. (1889a) On the formation of siliceous sinter by vegetation of thermal springs, American Journal of Science, 37, 351359.Google Scholar
Weed, W.H. (1889b) Formation of travertine and siliceous sinter by the vegetation of hot springs. US Geological Survey 9th Annual Report, 1887-1888, 613676.Google Scholar