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Reconstructing 3D Volumes of Biological Specimens Using a Model Based Iterative Approach

Published online by Cambridge University Press:  30 July 2021

Cheri M. Hampton
Affiliation:
UES, Inc., Dayton, Ohio, United States
Sherman J. Kinser
Affiliation:
High Performance Imaging, LLC, West Lafayette, Indiana, United States
Charles A. Bouman
Affiliation:
Purdue University, West Lafayette, Indiana, United States
Lawrence F. Drummy
Affiliation:
Air Force Research Laboratory, Wright-Patterson Air Force Base, Ohio, United States
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Abstract

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Type
3D Structures: From Macromolecular Assemblies to Whole Cells (3DEM FIG)
Copyright
Copyright © The Author(s), 2021. Published by Cambridge University Press on behalf of the Microscopy Society of America

References

Venkatakrishnan, S. V., Drummy, L. F., Jackson, M., De Graef, M., Simmons, J., & Bouman, C. A. (2014). Model-based iterative reconstruction for bright-field electron tomography. IEEE Transactions on Computational Imaging, 1(1), 1-15.10.1109/TCI.2014.2371751CrossRefGoogle Scholar
Farhadi, A., Ho, G. H., Sawyer, D. P., Bourdeau, R. W., & Shapiro, M. G. (2019). Ultrasound imaging of gene expression in mammalian cells. Science, 365(6460), 1469-1475.10.1126/science.aax4804CrossRefGoogle ScholarPubMed
Bouman, C. A. and Sauer, K.. A Unified Approach to Statistical Tomography Using Coordinate Descent Optimization. IEEE Transactions on Image Processing, 5(3), March 1996, 480492.10.1109/83.491321CrossRefGoogle Scholar
Wang, Xiao, Sabne, Amit, Sakdhnagool, Putt, Kisner, Sherman J, Bouman, Charles A, and Midkiff, Samuel P. Massively parallel 3D image reconstruction. In Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC17. 2017.Google Scholar
Super-Voxel Model Based Iterative Reconstruction (SVMBIR) [Computer software]. https://github.com/cabouman/svmbirGoogle Scholar
Thibault, J. B., Sauer, K. D., Bouman, C. A., & Hsieh, J. (2007). A three-dimensional statistical approach to improved image quality for multislice helical CT. Medical physics, 34(11), 4526-4544.10.1118/1.2789499CrossRefGoogle ScholarPubMed
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