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Constraining rule-based dynamics with types

Published online by Cambridge University Press:  28 February 2013


VINCENT DANOS
Affiliation:
School of Informatics, University of Edinburgh, United Kingdom Email: vdanos@inf.ed.ac.uk
RUSS HARMER
Affiliation:
Department of Systems Biology, Harvard Medical School, U.S.A. and CNRS, PPS, UMR 7126, Université Paris Diderot, Sorbonne Paris Cité, F-75205 Paris, France Email: russ.harmer@pps.univ-paris-diderot.fr
GLYNN WINSKEL
Affiliation:
Computer Laboratory, University of Cambridge, United Kingdom Email: glynn.winskel@cl.cam.ac.uk

Abstract

A generalised framework of site graphs is introduced in order to provide the first fully semantic definition of the side-effect-free core of the rule-based language Kappa. This formalisation allows the use of types either to confirm that a rule respects a certain invariant or to guide a restricted refinement process that allows us to constrain its run-time applicability.


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Copyright © Cambridge University Press 2013

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References

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