A sample of 101 specimens of the unisexual whiptail lizard Cnemidophorus nativo (Squamata; Teiidae) from a coastal site in Bahia State, Brazil were examined for the presence of endoparasites. Of these, 35 (34.7%) harboured helminths. Six helminth species were recovered from C. nativo, including five nematodes (Physaloptera retusa, Physalopteroides venancioi, Subulura lacertilia, Skrjabinelazia intermedia and Parapharyngodon sp., and one cestode (Oochoristica ameivae), all representing new host records. Most lizards were infected by a single species of helminth and none by more than three. Infection rates were neither significantly influenced by host body size nor by environmental factors. The results are compared with data from studies on other whiptail species in both South and North America.