In previous laboratory studies, it was demonstrated that baldcypress (Taxodium distichum) diets eliminated a critical gut protozoan, Pseudotrichonympha grassii, from Coptotermes formosanus Shiraki. The present authors surveyed field colonies of C. formosanus confined within baldcypress trees growing in a river in Louisiana and found P. grassii was present. Termites inhabiting baldcypress trees preferred pine (Pinus) and rejected baldcypress in choice tests in the field. Significantly more termites were recruited to baits when twice as much pine was offered, indicating that C. formosanus adjusted its foraging response to resource amount. In laboratory tests, sound baldcypress sapwood and heartwood depressed survival and gut protozoan counts in C. formosanus, but baldcypress infected with the basidiomycete fungus Rigidoporus sp. and an unidentified imperfect species was favourable for the termites and their symbionts. These results suggest an important role for microbial modification in termite host selection.