We report results of the studies relating to the development of the emerging nanostructured molybdenum trioxide (nMoO3)-based biocompatible label-free biosensing platform for breast cancer detection. The structural and morphological studies of the synthesized nMoO3 nanorods were investigated by XRD, SEM, X-ray photoelectron spectroscopic, and TEM techniques. This biocompatible one-dimensional (1D) nMoO3-based biosensing platform exhibited high sensitivity (0.904 µAmL/ng/cm2), wide linear detection range (2.5–110 ng/mL), and a lower detection limit as 2.47 ng/mL toward human epidermal growth factor receptor-2 detection. The results obtained using this sensor platform on serum samples of breast cancer patients were validated using ELISA.