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A review of recent and future marine extinctions

Published online by Cambridge University Press:  09 May 2023

Pablo del Monte-Luna*
Affiliation:
Departamento de Pesquerías y Biología Marina, Instituto Politécnico Nacional (IPN), La Paz, Mexico
Miguel Nakamura
Affiliation:
Departamento de Probabilidad y Estadística, Centro de Investigación en Matemáticas A.C. (CIMAT), Guanajuato, Mexico
Alba Vicente
Affiliation:
Departamento de Pesquerías y Biología Marina, Instituto Politécnico Nacional (IPN), La Paz, Mexico Departament de Dinàmica de la Terra i de l’Oceà, Facultat de Ciències de la Terra, Universitat de Barcelona-UB, Barcelona Spain
Lilian B. Pérez-Sosa
Affiliation:
Departamento de Probabilidad y Estadística, Centro de Investigación en Matemáticas A.C. (CIMAT), Guanajuato, Mexico
Arturo Yáñez-Arenas
Affiliation:
Departamento de Pesquerías y Biología Marina, Instituto Politécnico Nacional (IPN), La Paz, Mexico
Andrew W. Trites
Affiliation:
Institute for the Oceans and Fisheries, University of British Columbia, Vancouver, BC, Canada
Salvador E. Lluch-Cota
Affiliation:
Programa de Ecología Pesquera, Centro de Investigaciones Biológicas del Noroeste, La Paz, Mexico
*
Corresponding author: Pablo del Monte-Luna; Email: pdelmontel@ipn.mx
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Abstract

Between 20 and 24 marine extinctions, ranging from algal to mammal species, have occurred over the past 500 years. These relatively low numbers question whether the sixth mass extinction that is underway on land is also occurring in the ocean. There is, however, increasing evidence of worldwide losses of marine populations that may foretell a wave of oncoming marine extinctions. A review of current methods being used to determine the loss of biodiversity from the world’s oceans reveals the need to develop and apply new assessment methodologies that incorporate standardized metrics that allow comparisons to be made among different regions and taxonomic groups, and between current extinctions and past mass extinction events. Such efforts will contribute to a better understanding of extinction risk facing marine flora and fauna, as well as the ways in which it can be mitigated.

Type
Review
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2023. Published by Cambridge University Press

Impact statement

The number of global marine extinctions that have been reported during the past 500 years is less than 25 species. However, the rapid loss of marine populations around the world due mostly to human activities may soon trigger more extinctions that imperil marine ecosystems and the basic goods and services they provide humanity. However, uncertainties remain in detecting the disappearance of marine species and populations that can be addressed using new extinction metrics and methodologies to define conservation reference points and contextualize the current loss of marine biodiversity.

Introduction

Extinctions are a hot topic in ecology, as are concerns about the cumulative effects that the worldwide extinctions of thousands of species are having on human societies (Cardinale et al., Reference Cardinale, Duffy, Gonzalez, Hooper, Perrings, Venail, Narwani, Mace, Tilman, Wardle, Kinzig, Daily, Loreau, Grace, Larigauderie, Srivastava and Naeem2012). In the terrestrial realm, extinctions are occurring at a speed and magnitude comparable to mass extinctions in the distant past (Barnosky et al., Reference Barnosky, Matzke, Tomiya, Wogan, Swartz, Quental, Marshall and Ferrer2011). However, this same diagnosis is not as equally conclusive in marine ecosystems. Hence, this review 1) provides an overview of modern marine extinctions; 2) addresses key concepts that underlie the current biodiversity crisis in the world’s oceans; and 3) identifies priorities in the study of marine extinctions.

In this review, we define extinction as the disappearance of the last individual of a species (International Union for the Conservation of Nature (IUCN), 2019), and define extirpation or as the disappearance of a population (Powles et al., Reference Powles, Bradford, Bradford, Doubleday, Innes and Levings2000). Neo-extinctions and extirpations refer to events that occurred since 1500 (MacPhee and Flemming, Reference MacPhee, Flemming and MacPhee1999), an era of traceable worldwide environmental conditions. We address both extinctions and extirpations because modern marine extinctions appear to be relatively rare, and the bulk of available information on biodiversity loss in the sea concerns extirpations.

Extinction rates of modern marine species and populations

The argument that life on Earth is experiencing a sixth mass extinction is based on the observation that the speed at which terrestrial species have disappeared due to human actions after five centuries is far greater than the background extinction rate in the distant past (also known as the expected or normal extinction rate; Benton, Reference Benton2003). The background extinction rate for fossil marine invertebrates ranges between 0.1 and 1 extinctions per million extant species per year (E/MSY; Pimm et al., Reference Pimm, Russell, Gittleman and Brooks1995) and is as high as 1.8 E/MSY for some megafaunal groups (Dirzo and Raven, Reference Dirzo and Raven2003; Barnosky et al., Reference Barnosky, Matzke, Tomiya, Wogan, Swartz, Quental, Marshall and Ferrer2011; Proença and Pereira, Reference Proença, Pereira and Scheiner2013). In contrast, the current extinction rate of the terrestrial biota stands between 0.1 and 100 E/MSY (Pimm et al., Reference Pimm, Raven, Peterson, Şekercioğlu and Ehrlich2006; Millennium Ecosystem Assessment, 2005) and up to 150–260 E/MSY (150,000–260,000 extinctions in the past 500 years, out of 2 million known terrestrial species; Cowie et al., Reference Cowie, Bouchet and Fontaine2022), although this upper limit could be overestimated (Stork, Reference Stork2010; Briggs, Reference Briggs2017). Despite the considerable variance of these estimates, there is a consensus that the current extinction rate in terrestrial species is, on average, well above background extinction rates. This fundamental piece of evidence supports the idea of an ongoing sixth mass extinction.

No explicit estimates of the current extinction rate of marine species have been published so far, although Briggs (Reference Briggs2017) notes that they are extremely small. The estimated number of extant marine species is 1.8–2 million (Mora et al., Reference Mora, Tittensor, Adl, Simpson and Worm2011), of which 36 species were thought to have gone extinct during the past half millennium – but later lowered to just 20–24 species after reexamination of the available data (Table 1). Thus, the current extinction rate of marine species (E/MSY based on 24 extinctions, 1.8 million extant species, and 500 years) is 0.03, while the background extinction rate of the marine biota in the geologic past is 0.1–1.0 (Millennium Ecosystem Assessment, 2005). However, the large uncertainty in the estimates associated with small sample sizes (20–24 cases of extinction) and limited sampling effort means that it is just as plausible that the extinction rate has remained constant during the past 500 years as that it has changed (Nakamura et al., Reference Nakamura, del Monte-Luna, Lluch-Belda and Lluch-Cota2013).

Table 1. Declarations of extinction (E) and re-evaluation as not extinct (NE) for 36 marine species based on 18 assessments published from 1975 to 2022, as well as their current status.

Note: Species not assessed within a publication (−), and those that have been declared extinct but should continue to be evaluated (E *), are also shown.

References: 1. Olson (Reference Olson1975); 2. Vermeij (Reference Vermeij1993); 3. Carlton et al. (Reference Carlton1993); 4. Carlton et al. (Reference Carlton, Geller, Reaka-Kudla and Norse1999); 5. Hawkins et al. (Reference Hawkins, Roberts and Clark2000); 6. Wolff (Reference Wolff2000); 7. Glynn et al. (Reference Glynn, Maté, Baker and Calderón2001); 8. Dulvy et al. (Reference Dulvy, Sadovy and Reynolds2003); 9. Freyhof and Schöter (Reference Freyhof and Schöter2005); 10. Sakahira and Niimi (Reference Sakahira and Niimi2007); 11. del Monte-Luna et al. (Reference del Monte-Luna, Lluch-Belda, Serviere-Zaragoza, Carmona, Reyes-Bonilla, Aurioles-Gamboa, Castro-Aguirre, del Próo SA, Trujillo-Millán and Brook2007); 12. Díaz et al. (Reference Díaz, Gast and Torres2009); 13. Russell and Craig (Reference Russell and Craig2013); 14. Tennyson et al. (Reference Tennyson, Cooper and Shepherd2015); 15. Dong et al. (Reference Dong, Huang and Reid2015); 16. White et al. (Reference White, Kyne and Harris2019); 17. Zhang et al. (Reference Zhang, Jarić, Roberts, He, Du, Wu, Wang and Wei2020); 18. International Union for Conservation of Nature (IUCN) (2022).

* Species declared extinct that we consider should continue to be subject to evaluation.

At the population level, loss rates in marine populations are now 2–10 times higher than they were 500 years ago (Dulvy et al., Reference Dulvy, Sadovy and Reynolds2003, Reference Dulvy, Pinnegar, Reynolds and Turvey2009; del Monte-Luna et al., Reference del Monte-Luna, Lluch-Belda, Serviere-Zaragoza, Carmona, Reyes-Bonilla, Aurioles-Gamboa, Castro-Aguirre, del Próo SA, Trujillo-Millán and Brook2007; Nakamura et al., Reference Nakamura, del Monte-Luna, Lluch-Belda and Lluch-Cota2013). This accelerated loss of marine biodiversity is consistent with growing reports of marine defaunation being caused by human activities (Harnik et al., Reference Harnik, Lotze, Anderson, Finkel, Finnegan, Lindberg, Liow, Lockwood, McClain, McGuire, O’Dea, Pandolfi, Simpson and Tittensor2012; McCauley et al., Reference McCauley, Pinsky, Palumbi, Estes, Joyce and Warner2015), and may mark the beginning of a sixth mass extinction in the oceans. Rather than waiting for marine species to be declared extinct, monitoring declining populations of species that are at risk may prove to be a timely means by which extinction risk can be assessed.

The study of marine biodiversity loss in brief

Two of the first studies to cast doubt about the widely held presumption that marine life was resilient to extinctions concerned the neo-extinctions of four marine snails (Carlton, Reference Carlton1993; Vermeij, Reference Vermeij1993; Table 1). Subsequent studies cast further doubt on this presumption, and questioned whether or not a new wave of extinctions was underway (Malakoff, Reference Malakoff1997; Roberts and Hawkins, Reference Roberts and Hawkins1999). Adding further weight to this concern was a compiled list of 12 modern extinct marine species that included several imperiled species (Carlton et al., Reference Carlton, Geller, Reaka-Kudla and Norse1999; Powles et al., Reference Powles, Bradford, Bradford, Doubleday, Innes and Levings2000). Collectively, these studies deemed marine ecosystems to be at equal risk of losing species as terrestrial ecosystems, but pointed to a lack of procedures to identify extinct marine organisms.

Historical overfishing of the world oceans, along with other synergistic threats, were shown to have significantly reduced the abundance of over 30 populations and were initially believed to have caused the extinction of at least two species (Jackson et al., Reference Kleinbaum and Klein2001). A further 112 extirpations and 21 marine extinctions were later determined to have occurred during the past 500 years, along with identifying their proximal causes (mainly overexploitation and habitat modification; Dulvy et al., Reference Dulvy, Sadovy and Reynolds2003, Reference Dulvy, Pinnegar, Reynolds and Turvey2009). While there is some question of whether this number of extirpations is over-estimated by a factor of two (del Monte-Luna et al., Reference del Monte-Luna, Lluch-Belda, Serviere-Zaragoza, Carmona, Reyes-Bonilla, Aurioles-Gamboa, Castro-Aguirre, del Próo SA, Trujillo-Millán and Brook2007), there is general consensus on the number of marine neo-extinctions that have occurred.

During the past 500 years, marine ecosystems have experienced environmental stressors similar if not worse to those associated with pre-historic mass extinction events (e.g., climate change, ocean acidification, and sea-level rise) with a notable difference in the rapid pace with which environmental stressors are now occurring due to human activities (Harnik et al., Reference Harnik, Lotze, Anderson, Finkel, Finnegan, Lindberg, Liow, Lockwood, McClain, McGuire, O’Dea, Pandolfi, Simpson and Tittensor2012). These stressors are associated with marine extirpations and near-extirpations, and are leading to reduced cross-system connectivity, reduced genetic diversity, disrupted ecosystem stability, and altered biogeochemical cycles (McCauley et al., Reference McCauley, Pinsky, Palumbi, Estes, Joyce and Warner2015). Most, if not all, studies concur that the loss of marine populations has increased worldwide during the last century, and that the number of documented extinctions has remained rather small.

It is unclear why so few marine extinctions have been reported if they have indeed occurred. One possibility is that marine extinctions are equally common as terrestrial extinctions, but are simply harder to detect (Webb and Mindel, Reference Webb and Mindel2015). Another possibility is that less research effort is directed at the most endangered marine species relative to the increasingly large number of studies on commercial species (game fish; Guy et al., Reference Guy, Cox, Williams, Brown, Eckelbecker, Glassic, Lewis, Maskill, MacGarvey and Siemiantkowski2021). Both possibilities point to the need to increase research efforts toward the most imperiled marine populations and species before they reach a point of no return.

Anthropogenic pressure can reduce populations to a point where they cannot fulfill their functional roles within ecosystems (McCauley et al., Reference McCauley, Pinsky, Palumbi, Estes, Joyce and Warner2015). Such ecological extinctions have been documented in terrestrial (e.g., the empty forest; Redford, Reference Redford1992) and marine ecosystems (e.g., the eradication of sea otters, sheepshead labrid fish, and spiny lobsters along the North American Pacific coast; Jackson et al., Reference Kleinbaum and Klein2001; Jackson, Reference Jackson2008). These case studies show the particular harm that ecological extinctions have when the dwindling populations are structural ecological engineers (del Monte-Luna et al., Reference del Monte-Luna, Lluch-Belda, Serviere-Zaragoza, Carmona, Reyes-Bonilla, Aurioles-Gamboa, Castro-Aguirre, del Próo SA, Trujillo-Millán and Brook2007) that maintain corals and kelp forests, or are the primary providers of top-down control of trophic cascades and energy flow (Eger and Baum, Reference Eger and Baum2020).

Less is known about the effects of marine extinctions on microbial biodiversity (i.e., eubacteria, archaea, protists, single-celled fungi, and viruses), which play important roles in ecosystem functioning. However, the co-dependence (and co-evolution) of microbes and their animal and plant hosts species suggests a high likelihood that losses of marine fishes and other species could result in co-extinctions of microbial life forms. There may also be some interplay between microbes and the biodiversity of pathogens that rely on bacterial associates. If so, the effects of climate change on ecological processes that depend on microbial communities may have secondary effects on extinction rates of marine species (Hunter-Cevera et al., Reference Hunter-Cevera, Karl and Buckley2005; Weinbauer and Rassoulzadegan, Reference Weinbauer and Rassoulzadegan2007; Thaler, Reference Thaler2021).

The fossil record reveals differences in the local and global variables that affected the likelihood of species surviving periods of background and mass extinction events. Most notably, variables such as planktotrophic larval development, broad geographic distributions (Payne and Fionnegan, 2007), high species richness (Jablonski, 1986), and small body sizes enhanced the survival of species and genus during background times (Payne et al., Reference Payne, Bush, Heim, Knope and McCauley2016). In contrast, survival during mass extinction events was enhanced for species and entire lineages that were geographically broadly dispersed (Jablonski, 1986) but was not influenced by body size (which was inversely but moderately or not at all associated with extinction probability; Payne et al., Reference Payne, Bush, Heim, Knope and McCauley2016). However, survival during the Permian extinction event was enhanced for skeletal organisms that could contend with elevated carbon dioxide in their bloodstreams (hypercapnia), while nasal respiratory turbinates (that act as countercurrent heat exchangers during lung ventilation), together with burrowing behavior in vertebrates, were key to survival during the Triassic extinction event (Knoll et al., 2007).

The current crisis facing marine biodiversity is primarily affecting large species, including herbivores, and is disrupting trophic food webs (Payne et al., Reference Payne, Bush, Heim, Knope and McCauley2016; Atwood et al., Reference Atwood, Valentine, Hammill, McCauley, Madin, Beard and Pearse2020). Body size has been a good predictor of extinction risk in marine tetrapods (del Monte-Luna and Lluch-Belda, 2003), but is less effective among fishes and of no consequence for invertebrates (González-Valdovinos et al., Reference González-Valdovinos, del Monte-Luna and Trujillo-Millán2019) where factors such as climate, habitat alteration and loss, and motility may determine current extinction proneness as occur with terrestrial organism (Munstermann et al., Reference Munstermann, Heim, McCauley, Payne, Upham, Wang and Knope2021). However, should marine extinctions be biased towards larger species of fishes and invertebrates, it would follow that tropical ecosystems may be most at risk due to having higher concentrations of human activities (Finnegan et al., Reference Finnegan, Anderson, Harnik, Simpson, Tittensor, Byrnes, Finkel, Lindberg, Liow, Lockwood, Lotze, McClain, McGuire, O’Dea and Pandolfi2015).

In addition to studies focused on the loss of marine biodiversity, there have been reports of extinctions – some of which may not be well supported (see non-extinct reports in Table 1). For instance, the periwinkle Littoraria flammea was first considered extinct in China by Carlton (Reference Carlton1993) but later rediscovered and placed as a possible morphological variation of L. melanostoma (Dong et al., Reference Dong, Huang and Reid2015). Similarly, a marine reef fish from Mauritius (Anampses viridis) was reported to be extinct (Hawkins et al., Reference Hawkins, Roberts and Clark2000; Dulvy et al., Reference Dulvy, Sadovy and Reynolds2003; del Monte Luna et al., Reference del Monte-Luna, Lluch-Belda, Serviere-Zaragoza, Carmona, Reyes-Bonilla, Aurioles-Gamboa, Castro-Aguirre, del Próo SA, Trujillo-Millán and Brook2007), but is now considered to be the adult male color form of A. caeruleopunctatus, which is common and widespread throughout the Indo-West Pacific region. Another marine species whose extinction (Freyhof and Schöter, Reference Freyhof and Schöter2005) has been disputed over its taxonomic identity is the houting Coregonus oxyrhynchus from the North and Baltic Seas (Borcherding et al., Reference Borcherding, Heynen, Jäger-Kleinicke, Winter and Eckmann2010; Dierking et al., Reference Dierking, von Dewitz, Elsbernd, Bracamonte, Schulz, Voss, Hüssy, Froese, Hinrichsen and Reusch2014). However, these few cases of questionable extinctions do not negate the fact that the number of documented cases of recent global marine extinctions has increased over time (Table 1).

The number of reported marine extinctions during the past 500 years stands between 20 and 24 species across all marine groups, from algae to mammals (Table 1). Such low numbers of extinctions casts doubt on the claim of an ongoing mass extinction in the oceans. However, 60–112 marine populations were lost during the years 1500–2000, and there is concern that the continued increase of anthropogenic stressors will eradicate other populations of threatened species such as sharks and rays (Dulvy et al., Reference Dulvy, Pacoureau, Rigby, Pollom, Jabado, Ebert, Finucci, Pollock, Cheok, Derrick, Herman, Sherman, VanderWright, Lawson, Walls, Carlson, Charvet, Bineesh, Fernando, Ralph, Matsushiba, Hilton-Taylor, Fordham and Simpfendorfer2021; Pacoureau et al., Reference Pacoureau, Rigby, Kyne, Sherley, Winker, Carlson, Fordham, Barreto, Fernando, Francis, Jabado, Herman, Liu, Marshall, Pollom, Romanov, Simpfendorfer, Yin, Kindsvater and Dulvy2021). The cumulative eradications of populations may also shorten the time between an initial perturbation and the extinction of a species (extinction debt; Figueiredo et al., Reference Figueiredo, Krauss, Steffan-Dewenter and Cabral2019), making a rising of a wave of extinctions in the oceans an imminent reality (Rogers and Laffoley, Reference Rogers and Laffoley2013). Such irreversible “tipping points” in marine biodiversity will have undesirable consequences on basic goods and services that support human wellbeing (McCauley et al., Reference McCauley, Micheli, Young, Tittensor, Brumbaugh, Madin, Holmes, Smith, Lotze, DeSalles, Arnold and Worm2010, Reference McCauley, Pinsky, Palumbi, Estes, Joyce and Warner2015), as has been observed in terrestrial ecosystems (Dirzo et al., Reference Dirzo, Young, Galetti, Ceballos, Isaac and Collen2014).

The pace of marine biodiversity loss

Unraveling past extinctions to understand the present

Understanding past extinctions has been an important means to comprehend the causes and effects of current biotic crises. It is possible, for example, to use the taxonomic and geologic information compiled in paleontological databases to determine biotic richness, and extinction and origination rates – and to interpret how past ecosystems were formed and how they changed through time. Paleontological databases can also be used to derive predictors of extinction vulnerability of marine biota (Finnegan et al., Reference Finnegan, Anderson, Harnik, Simpson, Tittensor, Byrnes, Finkel, Lindberg, Liow, Lockwood, Lotze, McClain, McGuire, O’Dea and Pandolfi2015).

The fossil record shows that life on Earth evolved from the marine realm. Indeed, most of the fossil record is composed of marine organisms, which reflects their proneness to fossilization, their marked biodiversity, and their wide geographic distribution. In comparison, the fossil record of terrestrial species is relatively sparse due to fewer opportunities to be buried and fossilized. Thus, fossilized terrestrial species are generally scattered, composed of incomplete or fragmentary remains, and rarely show continental distributions. However, the terrestrial biota diversified rapidly following colonization of the land, and represents 85–95% of the current total biodiversity (Benton, Reference Benton2016).

Studies of past extinctions have tended to rely on the richness of the marine fossil record to evaluate the effects of past biotic crises. In contrast, evaluations of current biotic crises tend to rely on species presence and absence from continental ecosystems, due in part to the availability of data. Using different data sources to compare past and current extinctions presents some challenges. First, the data come from different ecosystem-type biotas (marine vs. terrestrial). Second, different metrics are used to compare the mass extinctions that occurred over millions of years with the biotic crises that have occurred on a scale of hundreds of years (Hull et al., Reference Hull, Darroch and Erwin2015).

Extinction metrics and their statistical analysis

Extinction analyses implicitly assume that the available raw data faithfully reflect the phenomenon of biological interest. For modern species, data are written dated records of last sightings or other conservation logs – whereas the raw data for ancient taxa resides fully in the fossil record. Unfortunately, a lack of direct observations of a species occurrence (because of physical impossibility or cost) does not warrant declaring a species extinct. Similarly, muddled data acquisition due to nonhomogeneous geographic, stratigraphic or temporal sampling efforts, taxonomic errors, and dating errors, among others, can lead to erroneous conclusions (Foote, Reference Foote2000; Alroy, Reference Alroy2010). Disentangling a biological conclusion from data that is further made noisy by reasons other than biology is a statistical challenge in itself that has bearing on uncertainty in declaring species extinct and in estimating rates of extinction (see Sprott, Reference Sprott2000, Chapter 4).

Once available data are deemed to accurately reveal the status of a species, the question arises as to how to quantify the likelihood that a species is extinct. One approach has been to quantify diversity or richness (Alroy et al., Reference Alroy, Aberhan, Bottjer, Foote, Fürsich, Harries, Hendy, Holland, Ivany, Kiessling, Kosnik, Marshall, McGowan, Miller, Olszewski, Patzkowsky, Peters, Villier, Wagner, Bonuso, Borkow, Brenneis, Clapham, Fall, Ferguson, Hanson, Krug, Layou, Leckey, Nürnberg, Powers, Sessa, Simpson, Tomašových and Visaggi2008) at a reference time for comparison with the number of taxa that existed over a specified time interval. This can be used to calculate the number of E/MSY (Pimm et al., Reference Pimm, Russell, Gittleman and Brooks1995). More elaborate rates of extinction have been proposed (Foote, Reference Foote2000; Alroy, Reference Alroy2010) that incorporate notions of species origin as well as extinction (see Foote, Reference Foote2000, for detailed discussion of their sensitivity to potential intrinsic factors such as preservation probability and interval size).

An alternative means to quantify the risk of extinction instead of using numbers or proportions becoming extinct (by means of the statistical theory of survival analysis; Kleinbaum and Klein, Reference Kleinbaum and Klein2005) involves characterizing the complete distribution (not only calculating its mean) of lifetimes in terms of hazard functions that are related to the probability of a taxon going extinct being conditional on its survival up to a given time (Doran et al., Reference Doran, Arnold, Parker and Huffer2006; Drake, Reference Drake2006; Nakamura et al., Reference Nakamura, del Monte-Luna, Lluch-Belda and Lluch-Cota2013). This approach to estimating extinction risk might be conveniently expanded by considering regression-type models to investigate nonhomogeneous relationships between hazard and other concurrent variables (i.e., Cox models, Kleimbaum and Klein, Reference Kleinbaum and Klein2005, Chapter 3, Doran et al., Reference Doran, Arnold, Parker and Huffer2006; Pérez-Sosa et al., Reference Pérez-Sosa, Nakamura, Del Monte-Luna and Vicente2023).

Metrics such as E/MSY calculated across two extremely different timescales (millions of years for fossils, and decades for modern species) are not readily useful for determining whether a sixth mass extinction is underway. For one thing, the different metrics have tended to be computed by counting different taxonomic levels. In addition, extinctions in the fossil era have already occurred, whereas the sixth extinction may be an ongoing process. However, there is an alternative per capita metric (applied at the genus level) that appears to overcome this limitation by explicitly considering observation timescales reduced to common metrics used at either of two extremes: geological scale versus modern scales (Spalding and Hull, Reference Spalding and Hull2021). It incorporates the concept of extinction debt (Kuussaari et al., Reference Kuussaari, Bommarco, Heikkinen, Helm, Krauss, Lindborg, Öckinger, Pärtel, Pino, Rodà, Stefanescu, Teder, Zobel and Steffan-Dewenter2009) and a model for mass extinctions based on stochastic pulses to compare ancient and recent extinction rates. Problems posed by comparing the past and present have been recognized for some time (Jablonski, Reference Jablonski and Chaloner1994; Barnoski, Reference Barnosky, Matzke, Tomiya, Wogan, Swartz, Quental, Marshall and Ferrer2011; Payne, Reference Payne, Bush, Heim, Knope and McCauley2016). However, comparing genera metrics with species metrics at contrasting time scales remains a problem with many subtleties regarding methodology and working assumptions.

One means to address the incomplete fossil record and its associated biases is to apply a technique known as rarefaction. This has been successfully applied to paleobiological data to artificially balance out samples of unequal representation and make them comparable. Such an approach represents sampling effort by observed size (Alroy, Reference Alroy2010) or by the completeness of species accumulation curves if there is sufficient data structure (Chao and Jost, Reference Chao and Jost2012). Sampling effort can also be quantified from external, concomitant sources such as geological or rock accessibility based on correlations between fossil and rock records (Peters, Reference Peters2005), although others authors believe the rock record is biased (Smith, Reference Smith2007; Benton, Reference Benton2009).

Uncertainty in dating is another intrinsic limitation of fossil data (Signor and Lipps, Reference Signor and Lipps1982) because the start and end dates of each genus range (represented by its first and last organism) may not have been preserved. Despite this limitation, the fossil record has been a valuable data source and statistical methodologies have been developed to quantify uncertainties (Strauss and Sadler, Reference Strauss and Sadler1989; Solow, Reference Solow1993). However, problems remain for species described as singletons whose genera’s first and last appearance occurred in the same time interval (Hammer and Harper, Reference Hammer and Harper2006). Singleton taxa have tended to be ignored (e.g., Spalding and Hull, Reference Spalding and Hull2021), but may yet provide valuable information (Fitzgerald and Carlson, Reference Fitzgerald and Carlson2006).

Another suspected bias associated with fossils is the so-called “pull of the recent” effect, an apparent increase in the diversity of the fossil record toward the recent due to favorable sampling of recent deposits. However, the increase in biodiversity has been shown to be a genuine biological pattern and not an artifact of a sampling bias (Jablonski et al., Reference Jablonski, Roy, Valentine, Price and Anderson2003). Rigorous quantification of statistical uncertainty under all these conditions is needed, but is not always present in most studies that evaluate extinctions.

Future perspectives in the study of marine extinctions

“Extinction debt” is a conceptual model that has been validated for terrestrial species (Kuussaari et al., Reference Kuussaari, Bommarco, Heikkinen, Helm, Krauss, Lindborg, Öckinger, Pärtel, Pino, Rodà, Stefanescu, Teder, Zobel and Steffan-Dewenter2009; Figueiredo et al., Reference Figueiredo, Krauss, Steffan-Dewenter and Cabral2019), and could be used to explain why marine populations are now disappearing at faster rates than did the loss of only two dozen species over the past half millennium. It could be used to gain insight into the biological and ecological processes involved, and how they determine the shortened time between initial perturbations of a population (e.g., collapse induced by overexploitation or severe habitat loss) and the extinction of a species. Such an analysis requires making sensible extrapolations of unseen extirpations, and estimating the risk of extinction of marine species in poorly studied taxa (Ricketts et al., Reference Ricketts, Dinerstein, Boucher, Brooks, Butchart, Hoffmann, Lamoreux, Morrison, Parr, Pilgrim, Rodrigues, Sechrest, Wallace, Berlin, Bielby, Burgess, Church, Cox, Knox, Loucks, Luck, Master, Moore, Naidoo, Ridgely, Schatz, Shire, Strand, Wettengel and Wikramanayake2005; Webb and Mindel, Reference Webb and Mindel2015; Pacoureau et al., Reference Pacoureau, Rigby, Kyne, Sherley, Winker, Carlson, Fordham, Barreto, Fernando, Francis, Jabado, Herman, Liu, Marshall, Pollom, Romanov, Simpfendorfer, Yin, Kindsvater and Dulvy2021). Another promising approach to study marine extinctions is to determine species–area relationships as a function of the amount of marine habitat that is being lost, as shown by the linkage between regional extinction and sediment truncation in North America (Heim and Peters, Reference Heim and Peters2011). This approach has been recently revisited by Spalding and Hull (Reference Spalding and Hull2021) to derive a sedimentary proxy of extinction debt.

Determining when a population or species has gone extinct is particularly difficult to do for marine organisms because of the vast tridimensional space they inhabit, and the dissimilar ontological stages they exhibit associated with different habitats and trophic levels (del Monte-Luna et al., Reference del Monte-Luna, Lluch-Belda, Serviere-Zaragoza, Carmona, Reyes-Bonilla, Aurioles-Gamboa, Castro-Aguirre, del Próo SA, Trujillo-Millán and Brook2007). The International Union for the Conservation of Nature (IUCN) (2019) has adopted new methodologies to evaluate extinctions that incorporate qualitative and quantitative approaches (Akçakaya et al., Reference Akçakaya, Keith, Burgman, Butchart, Hoffmann, Regan, Harrison and Boakes2017; Keith et al., Reference Keith, Butchart, Regan, Harrison, Akçakaya, Solow and Burgman2017; Thompson et al., Reference Thompson, Koshkina, Burgman, Butchart and Stone2017). However, a lack of transparency of some of the new methods can impede making immediate decisions, as can idiosyncratic differences among some expert opinions. Thus, there is a need to continue developing new approaches to assess extirpations and extinctions of marine species that are statistically sound, easy to apply, efficient under data-poor situations, and readily applicable in tandem with existing methods.

New approaches for assessing marine extinctions will help fill at least two information gaps. The first is criteria systematization needed to determine when a population or species can be considered extirpated or extinct. The second is a means to quantify biodiversity loss in terms of the number of populations and species. The new approaches need to carefully consider the input data that will be used to estimate current extinction rates in the marine realm. For example, they should factor in some measurement or proxy of sampling effort (applied at both modern and ancient time scales). They also need to address the problem of contrasting orders of magnitude in the time dimension, as well as the issue of applying metrics at differing taxonomic levels. Only then can sensible comparisons be made between modern extinction rates and those from the distant past. Until this is addressed, it would be prudent to withhold claiming a mass extinction is underway in the marine realm.

Nakamura et al. (Reference Nakamura, del Monte-Luna, Lluch-Belda and Lluch-Cota2013) concluded that 20 documented cases of extinction were insufficient to reliably determine that the relative extinction rate of marine species has increased or remained constant over the past 500 years. However, a few “extra” cases over the coming years could alter the statistical significance of their estimated extinction trend. Should the verdict of unresolved cases of species disappearances (Table 1) lean toward “extinction,” the extinction rate of marine species would show a statistically significantly increasing trend.

In conclusion, we envision three approaches to better understand the potential and true magnitude of biodiversity loss in the world’s oceans. These include: 1) estimating the extinction debt; 2) developing new methodologies to reliably determine when a marine population or species has gone extinct; and 3) improving analytical procedures to estimate rates of loss using standardized metrics that allow comparisons to be made among different regions and taxonomic groups, and between past and current times. Quantifying how many populations and species might go extinct in the future, generating global extinction metrics and determining how they change over time will contribute to defining quantitative reference points and focusing efforts to assess the loss of marine biodiversity.

Open peer review

To view the open peer review materials for this article, please visit http://doi.org/10.1017/ext.2023.11.

Data availability statement

Data considered in this manuscript are obtained from the reference list presented below.

Acknowledgments

P.d.M.-L. thanks the Instituto Politécnico Nacional–IPN and its scholarships from the Estímulos al Desempeño de los Investigadores–EDI and from the Comisión de Operación y Fomento de Actividades Académicas–COFAA.

Author contribution

Conceptualization: P.d.M.-L.; Data curation: A.V., A.Y.-A.; Formal analysis: P.d.M.-L.; Investigation: P.d.M.-L., M.N., A.V., L.P.-S., A.Y.-A., A.W.T., S.L.-C.; Project administration: P.d.M.-L.; Validation: M.N., A.V., L.P.-S.; Visualization: A.V., A.Y.-A.; Writing-original draft: P.d.M.-L., M.N., A.V., L.P.-S., A.Y.-A., A.W.T., S.L.-C.; Writing-review and editing: P.d.M.-L., M.N., A.V., L.P.-S., A.Y.-A., A.W.T., S.L.-C.

Financial support

We thank Project Ciencia Básica A1S19598 of the Consejo Nacional de Ciencia y Tecnología (CONACyT) and Project SIP 20231624 of the Instituto Politécnico Nacional.

Competing interest

The authors declare no competing interest.

Ethics standard

Authors’ management of the data and scholarship has been used objectively and without any bias. The authors confirm that the manuscript is original and has not been previously submitted to another journal.

References

Akçakaya, HR, Keith, DA, Burgman, M, Butchart, SH, Hoffmann, M, Regan, HM, Harrison, I and Boakes, E (2017) Inferring extinctions III: A cost-benefit framework for listing extinct species. Biological Conservation 214, 336342.CrossRefGoogle Scholar
Alroy, J (2010) Fair sampling of taxonomic richness and unbiased estimation of origination and extinction rates. The Paleontological Society Papers 16, 5580.CrossRefGoogle Scholar
Alroy, J, Aberhan, M, Bottjer, DJ, Foote, M, Fürsich, FT, Harries, PJ, Hendy, AJW, Holland, SM, Ivany, LC, Kiessling, W, Kosnik, MA, Marshall, CR, McGowan, AJ, Miller, AI, Olszewski, TO, Patzkowsky, ME, Peters, SE, Villier, L, Wagner, PJ, Bonuso, N, Borkow, PS, Brenneis, B, Clapham, ME, Fall, LM, Ferguson, CA, Hanson, VL, Krug, AZ, Layou, KM, Leckey, EH, Nürnberg, S, Powers, CM, Sessa, JA, Simpson, C, Tomašových, A and Visaggi, CC (2008) Phanerozoic trends in the global diversity of marine invertebrates. Science 321(5885), 97100.CrossRefGoogle ScholarPubMed
Atwood, TB, Valentine, SA, Hammill, E, McCauley, DJ, Madin, EMP, Beard, KH and Pearse, WD (2020) Herbivores at the highest risk of extinction among mammals, birds, and reptiles. Science Advances 6, eabb8458.CrossRefGoogle ScholarPubMed
Barnosky, AD, Matzke, N, Tomiya, S, Wogan, GO, Swartz, B, Quental, TB, Marshall, C and Ferrer, EA (2011) Has the Earth’s sixth mass extinction already arrived? Nature 471(7336), 5157.CrossRefGoogle ScholarPubMed
Benton, MJ (2003) When Life Nearly Died: The Greatest Mass Extinction of all Time. London: Thames & Hudson.Google Scholar
Benton, MJ (2009) The completeness of the fossil record. Significance 6(3), 117121.CrossRefGoogle Scholar
Benton, MJ (2016) Origins of biodiversity. PLoS Biology 14(11), e2000724.CrossRefGoogle ScholarPubMed
Borcherding, J, Heynen, M, Jäger-Kleinicke, T, Winter, HV and Eckmann, R (2010) Re-establishment of the North Sea houting in the river Rhine. Fisheries Management and Ecology 17(3), 291293.CrossRefGoogle Scholar
Briggs, JC (2017) Emergence of a sixth mass extinction? Biological Journal of the Linnean Society 122(2), 243248.CrossRefGoogle Scholar
Cardinale, BJ, Duffy, JE, Gonzalez, A, Hooper, DU, Perrings, C, Venail, P, Narwani, A, Mace, GM, Tilman, D, Wardle, DA, Kinzig, AP, Daily, GC, Loreau, M, Grace, JB, Larigauderie, A, Srivastava, DS and Naeem, S (2012) Biodiversity loss and its impact on humanity. Nature 486(7401), 5967.CrossRefGoogle ScholarPubMed
Carlton, JT (1993) Neoextinctions of marine invertebrates. American Zoologist 33(6), 499509.CrossRefGoogle Scholar
Carlton, JT, Geller, JB, Reaka-Kudla, ML and Norse, EA (1999) Historical extinctions in the sea. Annual Review of Ecology and Systematics 30, 515538.CrossRefGoogle Scholar
Chao, A and Jost, L (2012) Coverage-based rarefaction and extrapolation: Standardizing samples by completeness rather than size. Ecology 93(12), 25332547.CrossRefGoogle ScholarPubMed
Cowie, RH, Bouchet, P and Fontaine, B (2022) The sixth mass extinction: Fact, fiction or speculation? Biological Reviews 97, 640663.CrossRefGoogle ScholarPubMed
del Monte-Luna, P and Lluch-Belda, D (2003) Vulnerability and body size: Tetrapods versus fish. Population Ecology 45, 257262.CrossRefGoogle Scholar
del Monte-Luna, P, Lluch-Belda, D, Serviere-Zaragoza, E, Carmona, R, Reyes-Bonilla, H, Aurioles-Gamboa, D, Castro-Aguirre, JL, del Próo SA, G, Trujillo-Millán, O and Brook, BW (2007) Marine extinctions revisited. Fish and Fisheries 8(2), 107122.CrossRefGoogle Scholar
Díaz, JM, Gast, F and Torres, DC (2009) Rediscovery of a Caribbean living fossil: Pholadomya candida GB Sowerby I, 1823 (Bivalvia: Anomalodesmata: Pholadomyoidea). The Nautilus 123(1), 1920.Google Scholar
Dierking, J, von Dewitz, B, Elsbernd, L, Bracamonte, S, Schulz, H, Voss, R, Hüssy, K, Froese, R, Hinrichsen, H-H and Reusch, TBH (2014) Baltic cod genetic diversity predicted by stock structure and oxygen situation – a new indicator for ecosystem based management? In ICES/HELCOM Working Group on Integrated Assessments of the Baltic Sea (WGIAB), 14 October 2014. Kiel, Germany: GEOMAR. Available at https://oceanrep.geomar.de/id/eprint/25960.Google Scholar
Dirzo, R and Raven, PH (2003) Global state of biodiversity and loss. Annual Review of Environment and Resources 28(1), 137167.CrossRefGoogle Scholar
Dirzo, R, Young, HS, Galetti, M, Ceballos, G, Isaac, NJ and Collen, B (2014) Defaunation in the Anthropocene. Science 345(6195), 401406.CrossRefGoogle ScholarPubMed
Dong, Y, Huang, X and Reid, DG (2015) Rediscovery of one of the very few ‘unequivocally extinct’ species of marine molluscs: Littoraria flammea (Philippi, 1847) lost, found—And lost again? Journal of Molluscan Studies 81(3), 313321.CrossRefGoogle Scholar
Doran, NA, Arnold, AJ, Parker, WC and Huffer, FW (2006) Is extinction age dependent? PALAIOS 21(6), 571579.CrossRefGoogle Scholar
Drake, JM (2006) Extinction times in experimental populations. Ecology 87(9), 22152220.CrossRefGoogle ScholarPubMed
Dulvy, NK, Sadovy, Y and Reynolds, JD (2003) Extinction vulnerability in marine populations. Fish and Fisheries 4(1), 2564.CrossRefGoogle Scholar
Dulvy, NK, Pinnegar, JK and Reynolds, JD (2009) Holocene extinctions in the sea. In Turvey, ST (ed.), Holocene Extinctions. New York: Oxford University Press, pp. 129150.CrossRefGoogle Scholar
Dulvy, NK, Pacoureau, N, Rigby, CL, Pollom, RA, Jabado, RW, Ebert, DA, Finucci, B, Pollock, CM, Cheok, J, Derrick, DH, Herman, KB, Sherman, CS, VanderWright, WJ, Lawson, JM, Walls, RHL, Carlson, JK, Charvet, P, Bineesh, KK, Fernando, D, Ralph, GM, Matsushiba, JH, Hilton-Taylor, C, Fordham, SV and Simpfendorfer, CA (2021) Overfishing drives over one-third of all sharks and rays toward a global extinction crisis. Current Biology 31, 15.CrossRefGoogle Scholar
Eger, AM and Baum, JK (2020) Trophic cascades and connectivity in coastal benthic marine ecosystems: A meta-analysis of experimental and observational research. Marine Ecology Progress Series 656, 139152.CrossRefGoogle Scholar
Figueiredo, L, Krauss, J, Steffan-Dewenter, I and Cabral, JS (2019) Understanding extinction debts: Spatio–temporal scales, mechanisms and a roadmap for future research. Ecography 42(12), 19731990.CrossRefGoogle Scholar
Finnegan, S, Anderson, SC*, Harnik, PG, Simpson, C, Tittensor, DP, Byrnes, JE, Finkel, ZV, Lindberg, DR, Liow, LH, Lockwood, R, Lotze, HK, McClain, CM, McGuire, JL, O’Dea, A and Pandolfi, JM (2015) Extinctions. Paleontological baselines for evaluating extinction risk in the modern oceans. Science 348(6234), 567570.CrossRefGoogle ScholarPubMed
Fitzgerald, PC and Carlson, SJ (2006) Examining the latitudinal diversity gradient in Paleozoic terebratulide brachiopods: Should singleton data be removed? Paleobiology 32(3), 367386.CrossRefGoogle Scholar
Foote, M (2000) Origination and extinction components of taxonomic diversity: General problems. Paleobiology 26, 74102.CrossRefGoogle Scholar
Freyhof, J and Schöter, C (2005) The houting Coregonus oxyrinchus (L.) (Salmoniformes: Coregonidae), a globally extinct species from the North Sea basin. Journal of Fish Biology 67(3), 713729.CrossRefGoogle Scholar
Glynn, PW, Maté, JL, Baker, AC and Calderón, MO (2001) Coral bleaching and mortality in Panama and Ecuador during the 1997–1998 El Niño–Southern oscillation event: Spatial/temporal patterns and comparisons with the 1982–1983 event. Bulletin of Marine Science 69(1), 79109.Google Scholar
González-Valdovinos, M, del Monte-Luna, P and Trujillo-Millán, O (2019) Assessing body weight as a predictor of vulnerability for extinction in marine invertebrates. Latin American Journal of Aquatic Research 47(1), 138146.CrossRefGoogle Scholar
Guy, CS, Cox, TL, Williams, JR, Brown, CD, Eckelbecker, RW, Glassic, HCG, Lewis, MC, Maskill, PAC, MacGarvey, LM and Siemiantkowski, MJ (2021) A paradoxical knowledge gap in science for critically endangered fishes and game fishes during the sixth mass extinction. Scientific Reports 11, 8447.CrossRefGoogle ScholarPubMed
Hammer, O and Harper, DAT (2006) Paleontological Data Analysis. Oxford: Blackwell Publishing.Google Scholar
Harnik, PG, Lotze, HK, Anderson, SC, Finkel, ZV, Finnegan, S, Lindberg, DR, Liow, LH, Lockwood, R, McClain, CR, McGuire, JL, O’Dea, A, Pandolfi, JM, Simpson, C and Tittensor, DP (2012) Extinctions in ancient and modern seas. Trends in Ecology & Evolution 27(11), 608617.CrossRefGoogle ScholarPubMed
Hawkins, JP, Roberts, CM and Clark, V (2000) The threatened status of restricted-range coral reef fish species. Animal Conservation 3(1), 8188.CrossRefGoogle Scholar
Heim, NA and Peters, SE (2011) Covariation in macrostratigraphic and macroevolutionary patterns in the marine record of North America. GSA Bulletin 123, 620630.CrossRefGoogle Scholar
Hull, PM, Darroch, SA and Erwin, DH (2015) Rarity in mass extinctions and the future of ecosystems. Nature 528(7582), 345351.CrossRefGoogle ScholarPubMed
Hunter-Cevera, J, Karl, D and Buckley, M (2005) Marine Microbial Diversity: The Key to Earth’s Habitability. This report is based on a colloquium, sponsored by the American Academy of Microbiology, held April 8–10, 2005, in San Francisco, California. Washington DC: The American Society for Microbiology, pp. 28.Google Scholar
IUCN Standards and Petitions Subcommittee (2019) Guidelines for using the IUCN Red List categories and criteria. Prepared by the Standards and Petitions Subcommittee. Available at https://www.iucnredlist.org/documents/RedListGuidelines.pdf (Accessed May 22, 2023).Google Scholar
International Union for Conservation of Nature (IUCN) (2022) The IUCN red list of threatened species. Version 2022-1.Google Scholar
Jablonski, D. and Chaloner, WG (1994) Extinctions in the Fossil Record [and Discussion]. Phil. Trans. R. Soc. Lon. B 344, 1117.Google Scholar
Jablonski, D, Roy, K, Valentine, JW, Price, RM and Anderson, PS (2003) The impact of the pull of the recent on the history of marine diversity. Science 300(5622), 11331135.CrossRefGoogle ScholarPubMed
Jackson, JB (2008) Ecological extinction and evolution in the brave new ocean. Proceedings of the National Academy of Sciences 105(suppl. 1), 1145811465.CrossRefGoogle ScholarPubMed
Jackson, JB, Kirby, MX, Berger, WH, Bjorndal, KA, Botsford, LW, Bourque, BJ, Bradbury, RH, Cooke, R, Erlandson, J, Estes, JA, Hughes, TP, Kidwell, S, Lange, CB, Lenihan, HS, Pandolfi, JM, Peterson, CH, Steneck, RS, Tegner, MJ and Warner, RR (2001) Historical overfishing and the recent collapse of coastal ecosystems. Science 293(5530), 629638.CrossRefGoogle ScholarPubMed
Keith, DA, Butchart, SH, Regan, HM, Harrison, I, Akçakaya, HR, Solow, AR and Burgman, MA (2017) Inferring extinctions I: A structured method using information on threats. Biological Conservation 214, 320327.CrossRefGoogle Scholar
Kleinbaum, DG and Klein, M (2005) Survival Analysis: A Self-Learning Text, Vol. 3. New York: Springer.CrossRefGoogle Scholar
Kuussaari, M, Bommarco, R, Heikkinen, RK, Helm, A, Krauss, J, Lindborg, R, Öckinger, E, Pärtel, M, Pino, J, Rodà, F, Stefanescu, C, Teder, T, Zobel, M and Steffan-Dewenter, I (2009) Extinction debt: A challenge for biodiversity conservation. Trends in Ecology & Evolution 24(10), 564571.CrossRefGoogle ScholarPubMed
MacPhee, RDE and Flemming, C (1999) The last five hundred years of mammalian species extinctions. In MacPhee, RDE (ed.), Extinctions in Near Time. New York: Springer Science & Business Media, pp. 333371.CrossRefGoogle Scholar
Malakoff, D (1997) Extinction on the high seas. Science 277, 486488.CrossRefGoogle Scholar
McCauley, DJ, Micheli, F, Young, HS, Tittensor, DP, Brumbaugh, DR, Madin, EM, Holmes, KE, Smith, JE, Lotze, HK, DeSalles, PA, Arnold, SN and Worm, B (2010) Acute effects of removing large fish from a near-pristine coral reef. Marine Biology 157(12), 27392750.CrossRefGoogle ScholarPubMed
McCauley, DJ, Pinsky, ML, Palumbi, SR, Estes, JA, Joyce, FH and Warner, RR (2015) Marine defaunation: Animal loss in the global ocean. Science 347(6219), 1255641.CrossRefGoogle ScholarPubMed
Millennium Ecosystem Assessment (2005) Ecosystems and Human Well-Being: Biodiversity Synthesis. Washington, DC: World Resources Institute.Google Scholar
Mora, C, Tittensor, DP, Adl, S, Simpson, AG and Worm, B (2011) How many species are there on earth and in the ocean? PLoS Biology 9(8), e1001127.CrossRefGoogle ScholarPubMed
Munstermann, MJ, Heim, NA, McCauley, DJ, Payne, JL, Upham, NS, Wang, SC and Knope, ML (2021) A global ecological signal of extinction risk in terrestrial vertebrates. Conservation Biology 36: e13852.Google ScholarPubMed
Nakamura, M, del Monte-Luna, P, Lluch-Belda, D and Lluch-Cota, SE (2013) Statistical inference for extinction rates based on last sightings. Journal of Theoretical Biology 333, 166173.CrossRefGoogle ScholarPubMed
Olson, SI (1975) Paleornithology of St. Helena island South Atlantic Ocean. Smithsonian Contributions to Paleobiology 23, 49.Google Scholar
Pacoureau, N, Rigby, CL, Kyne, PM, Sherley, RB, Winker, H, Carlson, JK, Fordham, SV, Barreto, R, Fernando, D, Francis, MP, Jabado, RW, Herman, KB, Liu, K-M, Marshall, AD, Pollom, RA, Romanov, EV, Simpfendorfer, CA, Yin, JS, Kindsvater, HK and Dulvy, NK (2021) Half a century of global decline in oceanic sharks and rays. Nature 589(7843), 567571.CrossRefGoogle ScholarPubMed
Payne, JL, Bush, AM, Heim, NA, Knope, ML and McCauley, DJ (2016) Ecological selectivity of the emerging mass extinction in the oceans. Science 353(6305), 12841286.CrossRefGoogle ScholarPubMed
Pérez-Sosa, LB, Nakamura, M, Del Monte-Luna, P and Vicente, A (2023) Role of taxa age and geological range: survival analysis of marine biota over the last 538 million years. Journal of Agricultural, Biological, and Environmental Statistics. (Accepted April, 2023).Google Scholar
Peters, SE (2005) Geologic constraints on the macroevolutionary history of marine animals. Proceedings of the National Academy of Sciences 102(35), 1232612331.CrossRefGoogle ScholarPubMed
Pimm, SL, Russell, GJ, Gittleman, JL and Brooks, TM (1995) The future of biodiversity. Science 269(5222), 347350.CrossRefGoogle ScholarPubMed
Pimm, S, Raven, P, Peterson, A, Şekercioğlu, ÇH and Ehrlich, PR (2006) Human impacts on the rates of recent, present, and future bird extinctions. Proceedings of the National Academy of Sciences 103(29), 1094110946.CrossRefGoogle ScholarPubMed
Powles, H, Bradford, MJ, Bradford, RG, Doubleday, WG, Innes, S and Levings, CD (2000) Assessing and protecting endangered marine species. ICES Journal of Marine Science 57(3), 669676.CrossRefGoogle Scholar
Proença, V and Pereira, HM (2013) Comparing extinction rates: Past, present, and future. In Scheiner, SM (ed.), Encyclopedia of Biodiversity, Vol. 2, 2nd Edn. Amsterdam: Elsevier, pp. 167176.CrossRefGoogle Scholar
Redford, KH (1992) The empty forest. Bioscience 42(6), 412422.CrossRefGoogle Scholar
Ricketts, TH, Dinerstein, E, Boucher, T, Brooks, TM, Butchart, SH, Hoffmann, M, Lamoreux, JF, Morrison, J, Parr, M, Pilgrim, JD, Rodrigues, ASL, Sechrest, W, Wallace, GE, Berlin, K, Bielby, J, Burgess, ND, Church, DR, Cox, N, Knox, D, Loucks, C, Luck, GW, Master, LL, Moore, R, Naidoo, R, Ridgely, R, Schatz, GE, Shire, G, Strand, H, Wettengel, W and Wikramanayake, E (2005) Pinpointing and preventing imminent extinctions. Proceedings of the National Academy of Sciences 102(51), 1849718501.CrossRefGoogle ScholarPubMed
Roberts, CM and Hawkins, JP (1999) Extinction risk in the sea. Trends in Ecology & Evolution 14(6), 241246.CrossRefGoogle ScholarPubMed
Rogers, AD and Laffoley, D (2013) Introduction to the special issue: The global state of the ocean; interactions between stresses, impacts and some potential solutions. Synthesis papers from the International Programme on the State of the Ocean 2011 and 2012 workshops. Marine Pollution Bulletin 74(2), 491494.CrossRefGoogle Scholar
Russell, BC and Craig, MT (2013) Anampses viridis Valenciennes 1840 (Pisces: Labridae)—A case of taxonomic confusion and mistaken extinction. Zootaxa 3722(1), 8391.CrossRefGoogle ScholarPubMed
Sakahira, F and Niimi, M (2007) Ancient DNA analysis of the Japanese sea lion (Zalophus californianus japonicus Peters, 1866): Preliminary results using mitochondrial control-region sequences. Zoological Science 24(1), 8185.CrossRefGoogle ScholarPubMed
Signor, PW and Lipps, JH (1982) Sampling bias, gradual extinction patterns and catastrophes in the fossil record. Geological Society and of America Special Papers 190, 291296.CrossRefGoogle Scholar
Smith, AB (2007) Marine diversity through the Phanerozoic: Problems and prospects. Journal of the Geological Society 164, 731745.CrossRefGoogle Scholar
Solow, AR (1993) Inferring extinction from sighting data. Ecology 74(3), 962964.CrossRefGoogle Scholar
Spalding, C and Hull, PM (2021) Towards quantifying the mass extinction debt of the Anthropocene. Proceedings of the Royal Society B 288(1949), 20202332.CrossRefGoogle ScholarPubMed
Sprott, DA (2000) Statistical Inference in Science. New York: Springer-Verlag.Google Scholar
Stork, NE (2010) Re-assessing current extinction rates. Biodiversity and Conservation 19(2), 357371.CrossRefGoogle Scholar
Strauss, D and Sadler, PM (1989) Classical confidence intervals and Bayesian probability estimates for ends of local taxon ranges. Mathematical Geology 21, 411427.CrossRefGoogle Scholar
Tennyson, AJ, Cooper, JH and Shepherd, LD (2015) A new species of extinct Pterodroma petrel (Procellariiformes: Procellariidae) from the Chatham Islands, New Zealand. Bulletin of the British Ornithologists’ Club 135(3), 267277.Google Scholar
Thaler, DS (2021) Is global microbial biodiversity increasing, decreasing, or staying the same? Frontiers in Ecology and Evolution 9, 565649.CrossRefGoogle Scholar
Thompson, CJ, Koshkina, V, Burgman, MA, Butchart, SH and Stone, L (2017) Inferring extinctions II: A practical, iterative model based on records and surveys. Biological Conservation 214, 328335.CrossRefGoogle Scholar
Vermeij, GJ (1993) Biogeography of recently extinct marine species: Implications for conservation. Conservation Biology 7(2), 391397.CrossRefGoogle Scholar
Webb, TJ and Mindel, BL (2015) Global patterns of extinction risk in marine and non-marine systems. Current Biology 25(4), 506511.CrossRefGoogle ScholarPubMed
Weinbauer, MG and Rassoulzadegan, F (2007) Extinction of microbes: Evidence and potential consequences. Endangered Species Research 3, 205215.CrossRefGoogle Scholar
White, WT, Kyne, PM and Harris, M (2019) Lost before found: A new species of whaler shark Carcharhinus obsolerus from the Western Central Pacific known only from historic records. PLoS One 14(1), e0209387.CrossRefGoogle ScholarPubMed
Wolff, WJ (2000) The south-eastern North Sea: Losses of vertebrate fauna during the past 2000 years. Biological Conservation 95, 209217.CrossRefGoogle Scholar
Zhang, H, Jarić, I, Roberts, DL, He, Y, Du, H, Wu, J, Wang, C and Wei, Q (2020) Extinction of one of the world’s largest freshwater fishes: Lessons for conserving the endangered Yangtze fauna. Science of the Total Environment 710, 136242.CrossRefGoogle ScholarPubMed
Figure 0

Table 1. Declarations of extinction (E) and re-evaluation as not extinct (NE) for 36 marine species based on 18 assessments published from 1975 to 2022, as well as their current status.

Author comment: A review of recent and future marine extinctions — R0/PR1

Comments

First, I thank you for your kind invitation to write a review article for the brand-new-Journal Cambridge Prisms: Extinctions. We have prepared a brief ~4,000-word summary on recent marine extinctions in which a systematic updating of published literature reflecting the progress of research on the topic is presented. Additionally, in different subsections, we addressed key ideas such as the pace of marine biodiversity loss and perspectives in the study of marine extinctions.

We hereby declare that our manuscript has not been submitted nor published in any other journal, the authors are aware of the content of the manuscript and have no conflict of interest.

Sincerely,

PABLO DEL MONTE LUNA

CICIMAR-IPN

Review: A review of recent and future marine extinctions — R0/PR2

Conflict of interest statement

Reviewer declares none.

Comments

Comments to Author: Summary

This study is presented as a review paper. Its objective is 1) provide an overview of modern marine extinctions, 2) address key concepts and methodologies that makes it difficult to contextualize and interpret the current biodiversity loss in marine ecosystems, and 3) identify priority areas for research to better quantify and contextualize current marine extinction rates.

When providing an overview of the state-of-knowledge on modern marine extinctions, the updated overview made by the authors is based on an unpublished (not peer-review) paper from Yañez-Arenas et al in prep, which can be problematic, since it cannot not yet considered “available evidence”. The authors also strongly claim multiple times in the review paper that the idea of an ongoing sixth mass extinction in the marine real should be put on hold, yet, I find this claim and their arguments put forward not well justified and not summarized well in the review paper, since in the current published literature there is a wide range of evidence and wide range of arguments debating and contextualizing the extinction rates in the marine real, which are not well captured in this review paper. I think this point by itself needs to be reconsidered before this paper is considered for publication. Specially because this paper is presented as a review article, which is supposed to be a general summary of the existing literature on this topic and an attempt to explain the current state of understand on the topic tacked.

I would also suggest removing the reference (Yañez-Arenas et al. in prep) from this review and also Table 1 since this study is still in preparation and it has not yet been peer-reviewed and published. Specially since it claims the number of declared marine extinct species is 19 compared with the most recent study (UICN 2022) which claims the number of declared marine extinct species is 27. These discrepancy in number should be reviewed, explained, and justified before it is summarized in this Table 1 and used as evidence for understanding current extinction rates in the marine realm.

However, I think the authors summarize well and identify well key important research challenges in estimating and interpreting estimations of past and present marine extinctions, for example, challenges arising when contrasting time scales and the different taxonomic levels used in the past and present calculations of extinction rates. Authors also make the effort to summarize the state of knowledge and put forward potential solutions on some of the identified challenges (how to adapt extinction risk metrics to differing time scales, or how to account for sampling effort bias), and also summarize where advances and research is still lacking (for example, how compare metrics between two periods based on different taxonomic levels is still challenge, among others).

The authors also highlight the need to spend more resources to develop robust methods for determining when a species or population has gone extinct (referred as extinction assessments) and for determining current extinction rates using standardized methods to better contextualize ongoing marine extinctions with past mass extinction events.

Other minor comments:

Table 1 nicely summarizes in a list the number of declared marine species gone extinct between 1975 and 2022 (from algae to mammals), and which species have later been declared non-extinct by some other author. Although the Table is informative, the authors could consider modifying the table to make it more visual for the general readers. For example, it could include the common name, in addition to the Latin name, and also order/group the species by taxa groups or phyla, to get a quicker idea of how extinction risk is spread across different taxa.

Page 3 – Line 49-50 – The written statement for objective number two of this MS is not clear. Consider revising the wording “we consider giving nuance” and use alternative language to clarify the aim of objective number 2.

Page 4 – Line 113. While the authors define the term of extinction and extirpation in page 3, the authors did not define the term eradication, which is only used in this line of the MS. I think the authors refer to 60 to 112 documented extirpations around the world´s ocean. Please revise or define this term.

Page 4 -Line 115-116 – Revise the sentence claiming “¾ of all extant elasmobranchs might be committed to extinction” citing Pacoureau et al 2019 paper. Most recent paper, Dulvy et al 2021 Current Biology claims 1/3 of chondrichthyans are estimated to be threatened with extinction.

Page 4 – Line 116-117 claims the number of declared extinctions is between 19 and 30 depending in what is considered “sufficient evidence”. This needs to be cited well. Authors could cite table 1, but a closer look to table 1 reveals that the lower bound of 19 species is backed up by an MS in prep (Yañez-Arenas) and the upper bound of 27 by a published study (IUCN 2022). I suggest Yañez-Arenas et al MS in prep should be peer-review and published before it is included in this paper in order to justify a declared number of extinct marine species of 19. So either Authors should wait for the Yañez paper to be published in order to complete this table (and this study) or alternatively keep the number of declared marine extinctions to 29 as commonly accepted now.

Page 4 Line 130-131 – Again, the claim of 19 declared extinct species is based on an unpublished study. This should be revised and removed from this current study until the work is prep is peer-reviewed and published.

Page 6- Line 203-204 – This sentence would benefit from presenting and explaining the alternative metric and its strengths from the most current accepted metric (E/MSY). And I find Line 205-208 a bit confusing, and I suggest rewriting it to clarity its message and point, or showing an example of this survival analysis and how it is used to quantify the risk of extinction, and how this is a potential alternative and its novelty.

Page 8 – Line 294-295 – I agree that the application of IUCN methodologies to estimate extinction risk has been more applied to terrestrial populations than marine populations historically, but the number of IUCN assessment of marine species has increased remarkably in the last decade and should be acknowledged.

Page 8 – Line 295 -296- I find the discussion confusing. The word “therefore” perhaps is not needed to connect the two sentences. Or the sentence claiming that there is a need for new approaches for assessing extirpations and extinction of marine species is not well justified, based on the sentence above it.

Page 8 – Line300-313 – I agree with the authors that there is a need for 1) better determining when a population or species can be considered extirpated or extinct (referred as criteria systematization), 2) for better estimates of current extinction rates in the marine reals, 3) better ways and metrics to estimate past and current extinctions. Yet, these current challenges and needs, should not be used as evidence to claim, or not claim, whether there is an ongoing mass extinction in the marine realm. There are other lines of evidence and well supported arguments in this study and other published studies (e.g. Luypaert et al 2020, Webb et al 2015, Dulvy et al 2021) that do not fully support the claim that the extinction rate in the marine realm are lower than in the terrestrial real and that should be put on hold.

Review: A review of recent and future marine extinctions — R0/PR3

Conflict of interest statement

Reviewer declares none.

Comments

Comments to Author: The review manuscript titled “Recent and future marine extinctions” by del Monte-Luna et al. tackles a timely and important issue that is inline with the journalʻs mission. In this study, the authors review the available evidence for extinction of marine species in the modern biodiversity crisis and discuss the difficulties of putting these extinctions into their proper historical context in the geologic record. The study finds that somewhere between 19-30 marine species have documented extinctions and nicely discusses and reviews why there is this range of uncertainty. The authors discuss some common metrics for estimating extinction rates and why it is difficult to make “apples to apples” comparisons between the modern extinction rate and extinction rates in the fossil record. The manuscript has many strengths and I believe may ultimately help push the field in a positive direction, however I believe that a few key pieces are missing from this review and that some of what is covered is incomplete. If these major issues can be adequately addressed, I believe this manuscript has the potential to be published in Cambridge Prisms: Extinctions and make an excellent contribution to the field. I detail these major issues below and will reserve the more minor issues for now.

Major issues

1. The paleo component of the review is weakly developed. While the papers cited are a good start for the discussion in the field of how (including the many inherent challenges) to compare the modern biodiversity crisis to both prior background and mass extinction intervals, many key publications are completely missing. For example, there is not any discussion of the declining extinction rate of marine species across the Phanerozoic (nor citation of Raup and Sepkoski Science 1982 – see also Benton Science 1995 for terrestrial species that show the same decline in extinction rates across time) and what this means for comparison to the modern rate and putting it into proper context (that is the rate is changing across time in a predictable way). Also, see Knope et al Science 2020 for a mechanistic ecological explanation for this decline in extinction rates over evolutionary time. Also a few other key papers for comparison of marine extinction in the modern to the fossil record are missing (among others):

Finnegan S et al., Science 2015

Payne JL et al., Science 2016

Payne JL et al., Biology Letters 2016

2. Extinction events (modern or ancient) are generally evaluated on three criteria: 1) rate; 2) magnitude; and 3) selectivity. This review toggles between evaluation of rate and magnitude, without clearly and convincingly connecting the two - and perhaps more importantly, ignores selectivity altogether. If the authors want to make an argument for ignoring the patterns of extinction selectivity in the modern and how it compares to the fossil record, they should be explicit about why they consider it to not be important in a review on recent and future marine extinctions. Here are a few key studies on extinction and extinction risk selectivity in the fossil record and the modern as a starting point:

Knoll AH et al., EPSL 2007

Janevski GA and TK Baumiller Paleobiology 2009

Atwood T et al., Science Advances 2020

Munstermann M et al., Conservation Biology 2020

3. While the title of the manuscript includes “future marine extinctions” it feels that little attention is paid to extinction debt and what the trajectories of so many marine species with rapidly declining populations throughout their range are - given marine ecosystem management continues in a “business as usual” manner. If greater attention could be paid to the depopulation trends and to functional extinctions - I believe the manuscript would better portray the actual state of the crisis in the oceans. On this note, I donʻt think functional extinction is brought up at all in the study, when it is likely the more important issue in the modern crisis than full extinctions at this point in time – that is, extirpating every last individual of a species is required for it to be officially considered extinct, but the species stops contributing ecologically (and functionally) in a meaningful way long before it is driven entirely extinct. Further, large numbers of functional extinctions may lead to cascading effects on other species, including complete extinctions. These papers are already cited in the manuscript, but Dirzo et al. Science 2015 and MaCauley et al Science 2015 are good starting points for developing this component of the manuscript, beyond how they are cited now.

4. There is no recognition that in the modern the 19-30 documented complete extinctions of marine organisms are of only macro-organisms (macro-algae to mammals). To be more taxonomically inclusive (and to bring our microbial colleagues into the fold), I suggest that you also consider discussing what the rate, magnitude, and selectivity patterns of micro-organisms (e.g., single-celled protists, bacteria, archaea, viruses, fungi) in the oceans might be. Of course, the extinction patterns of these taxa are not well-constrained in the modern or in the fossil record, but that is exactly the point to make after explaining what we do know already – we need to work towards their inclusion if we are to fully understand the current biodiversity crisis and its proper geologic context. Of course, these microbial trajectories are tightly linked to biogeochemical cycles and ecosystem function that can impact macro-organisms in a wide variety of ways. Tangentially related, I think the manuscript could benefit from some figures – one idea would be a few simple pie charts about the taxonomic distribution of the documented extinctions (e.g., N number of extinctions in class and/or phylum XYZ – maybe one for the 19 and another for the 30?). These types of simple figures could then be incorporated into the discussion of taxonomic biases in the study of extinction. Another thought is to include a timeline figure of the dates of proposed extinctions and re-discoveries from table 1.

Review: A review of recent and future marine extinctions — R0/PR4

Conflict of interest statement

Reviewer declares none.

Comments

Comments to Author: The manuscript titled “Recent and future marine extinctions” reviews the current status of the “Sixth Mass Extinction” in the oceans. In particular, it explores the apparent disconnect between the claim that oceans are experiencing a mass extinction and the very small number of documented marine extinctions. This is, of course, an important topic and one that is of wide interest to extinction scholars and the general public. To this end, I found Table 1 very interesting and informative. One major improvement for Table 1 would be to add higher taxonomy. Including Kingdom, Phylum, and Class to the table would give readers a much more intuitive sense of how documented extinctions are spread across the tree of life.

However, I found the framing of the manuscript to be a bit off the mark and content of the review too shallow for a broad audience of paleontological and neontological extinction scientists. I think the most useful review papers (line 53 indicates this is a review paper) provide a detailed description of the state of the art and lay out a roadmap for future directions. The current manuscript presents an interesting and important problem but does not explain the state of the art with any detail. Methods from specific studies (e.g., Spalding & Hull) are both praised and criticized in general terms, but they are not explained. While the manuscript recommends that science do a better job at documenting species extinction and come up with better metrics for extinction rates observed across a range of timescales, this is not what I would consider to be a specific roadmap for moving forward.

To me, the framing of the manuscript is around how previous studies of marine extinction have claimed that we are currently in a mass extinction without recognizing that the number of documented extinctions is very small (lines134-136; 312-313). Rather, these studies have used populations declines, extirpations, and other measures of extinction risk in still extant species as a proxy for extinction. However, I find this to be a mischaracterization of the literature. Previous studies that use population declines etc. do indeed recognize and state explicitly that a marine mass extinction has not yet been realized, but if at-risk species continue to have population declines that restful in extinction, then the oceans will experience a mass extinction. To me, this is entirely reasonable and much more informative than only looking at documented extinctions and concluding there is no extinction event (lines 312-313). Of course, the manuscript is not claiming that is nothing going on viz-a-viz extinction, but the criticism of the existing research is unwarranted. In fact, given the small number of documented extinctions, monitoring extinction risk and making predictions about the future is more productive than waiting for more species to be documented as already extinct.

I found the treatments of most topics in the manuscript rather shallow for a review paper targeted at a broad audience. I think a much deeper exploration of why there are so few documented marine extinction would be quite informative. For example, the 20-30 documented extinctions could be the true number of extinctions over the past 500 years, but it could also be artificially low because of under-study. A quick scan of the IUCN Red List suggests that a small proportion of marine species have been evaluated—at least in comparison to terrestrial species. A discussion of why and how the oceans are understudied would be instructive. Relatedly, several studies have suggested, I think correctly, that marine species have been buffered from anthropogenic disturbances. While coastal resources have been exploited since the end of the Pleistocene on small scales, large impacts did not materialize until the industrial age which ushered in changed in terrigenous sediment delivery, pollution, and industrialized fishing in the open ocean.

One of the manuscript’s main take aways is that new metrics for measuring extinction need to be developed. However, several new metrics are praised (lines 203-208) without either explaining in detail what they are or explaining how they fall short (as the call for new metrics implies). Moreover, given the very small number of documented extinctions, I am not sure that a new metric will be any more informative than continuing to quantify and track at-risk populations.

I found the lack discussion of Payne et al. (2016) to be an oversight (in full disclosure, I’m a co-author on that paper). While Payne et al. is focused on extinction selectivity, it does address most of the issues raised in the manuscript with regards to extinction magnitude. It makes an “apples-to-apples” comparison of the fossil and recent records. And while it uses extinction threat + documented extinctions rather than exclusively relying on documented extinctions, it generates a range of potential extinction rates that range from background to mass extinction.

The discussion of the fossil record’s biases is also too shallow and lacking nuance. I worry that readers who are not deeply familiar with the structure of the geologic and fossil records will be left with the impression that they are biased to the point of not being useful. For example, the point is made that last appearances in the fossil record are rarely true last appearances (line 233). While this is true, there has been considerable work by Sadler, Marshall, Holland, and others to construct confidence intervals on observed last occurrences. The manuscript also claims that quantity of sedimentary rocks of different ages is an unexplored problem (line 229) without discussion of the work by Raup, Peters, Smith, Dunhill and others on this topic.

Two more minor points:

I found the manuscript to be lacking in several appropriate citations (e.g., for “Big 5” Mass extinctions, Signor-Lipps Effect, Pull of the Recent).

There are several uses of words that attribute value to scientific data and results. For example, “optimistic” (line 132) and “dire” (line 265). While I personally agree with the authors that anthropogenically-driven extinctions are bad (and I suspect most readers would too), these terms are in fact ambiguous. E.g., “Using the upper estimate of extinction” is much more clear than “Using the most dire numbers”.

Recommendation: A review of recent and future marine extinctions — R0/PR5

Comments

Comments to Author: I have now received reviews of this ms from three expert reviewers. All three of them find aspects of the ms to be useful and insightful, with the potential to make a real positive impact on the field, but they have also all raised concerns that are sufficiently major that some substantial changes are required. I would encourage the authors to carefully consider all three reviews, as there are a number of interesting ideas and constructive suggestions in all of them. However, I do recognise that several of the concerns are challenging to address within the constraints of the article type - Review articles are quite a short (3000-4000 word) format. This means that the constructive ideas for adding more depth that the reviewers provide may not be feasible and the final ms may need to remain more ‘broad brush’. I would encourage the authors to consider if they could reasonably include more detail of, for example, specific methods for estimating extinction (Reviewer 1) or why there are so few documented marine extinctions (Reviewer 1) - is this simply a data gap? It has been shown for example that IUCN assessments are concentrated within the taxonomically best known marine groups (see Webb & Mindel 2015 https://doi.org/10.1016/j.cub.2014.12.023) - does that in part explain the lack of observed extinctions? Or is it (as Reviewer 1 suggests) that marine species have so far been less exposed to the human activities driving extinctions (this is the argument made in McCauley in Marine Defaunation). I suspect a mix of the two is closest to the truth. More clarity on the distinctions between extinction rate, magnitude, and selectivity is also needed (Reviewer 2).

It may not be possible within the available space to fully cover issues of extinction in the fossil record (Reviewers 1 and 2), however more thorough citation of the relevant literature may help to address this point - both these reviewers provide some useful suggestions. Reviewer 2 makes an interesting point about microbial extinction rates - clearly microbes are often overlooked but play essential roles within ecosystems. However I do not feel it would be possible to do the topic justice within this review - but maybe making explicit mention of this omission would be sensible.

Even given the constraints of the ms format, I share the reviewers’ concerns that the literature that is reviewed may not be fairly characterised - Reviewer 3 provides some specific examples of this. All reviewers make the point that in marine systems, population declines, extinction risk, functional extinction, etc. are usually all we have to go on - and that although these are not direct measures of extinction, they should not be discounted. Perhaps a more balanced tone in discussing the published evidence would be appropriate. The Review format is, as the name suggests, intended to present a review on the current state of knowledge in a major subject field. This ms reads more like an opinion piece in places - I think a degree of subjective interpretation is appropriate but not too much. A Review should also not present original research, but as Reviewer 3 notes, some of the key points presented rely on a currently unpublished study (listed as in prep) and using this to counter other, formally published estimates is rather problematic - especially as the unpublished estimate sets the lower bound for the range of estimates listed in table 1.

As a final point - all reviewers make suggestions for how the visual components of the ms could be improved, through better design of the Table and/or inclusion of a figure. I agree that this could really increase the impact of the work and I would encourage the authors to give this some consideration.

Decision: A review of recent and future marine extinctions — R0/PR6

Comments

No accompanying comment.

Author comment: A review of recent and future marine extinctions — R1/PR7

Comments

No accompanying comment.

Review: A review of recent and future marine extinctions — R1/PR8

Conflict of interest statement

Reviewer declares none.

Comments

Comments to Author: This is my second review of the manuscript titled “A Review of recent and future marine extinctions”. Overall, the manuscript is improved, but I have a few lingering comments.

Table 1 is much improved! I think this will be useful to extinction scholars.

My major overarching concern is that the manuscript is unbalanced with regards to the challenges of comparing fossil and recent extinction metrics. The section titled “Extinction metrics and their statistical analysis” is devoted almost entirely to the problems of the fossil record. The second sentence of that section states that modern extinction records are derived from “written dated records of last sightings or other conservation logs”. However, the remainder of the paragraph and the next six paragraphs discuss only problems with measuring extinction in the fossil record. Are there not problems with recognizing extinctions in the modern? Are records from Victorian era European/American explorers a true random sample of marine biodiversity? Are earlier records made by European colonizers not without bias and hyperbole? Is the geographic coverage of species threat assessments uniform or is it highly idiosyncratic? Is it not true that oceanographers still make the claim that we know more about the moon than we do the ocean? It is also obvious from a quick scan of the Red List that there is a very strong bias in the evaluations of marine species that skews heavily towards charismatic megafauna and commercially important fish and invertebrates. (As an aside, an important caveat of this observation is that most information we have from the fossil record are from decidedly uncharismatic invertebrates.) All scientific data is imperfect and incomplete, thus it seems prudent to critically evaluate the nature of all the data needed to answer the question at hand.

Despite my comment above and given the word limit for the manuscript, I am not convinced that quite so much text should be devoted to the details of the nature of the paleontological and neontological records. Acknowledging that there are limitations and assumptions is a good idea, but unless there is something specific that is keeping us from answering of the focal question, are the oceans currently experiencing a mass extinction?, I would keep this section brief and allow more space for more relevant aspects of the problem. The manuscript argues, I think, that the two biggest challenges are comparing extinctions across two different timescale and comparing fossil genera to recent species. I suggest devoting more text to these issues and less to the particulars of the fossil record.

Minor comments and suggestions:

Line 57: Is it necessary to put ‘terrestrial’ in parentheses? The so-called sixth extinction has been largely defined by terrestrial animals while the “big 5” mass extinctions of the fossil record have been defined by marine animals—though clear terrestrial vertebrate extinctions have also been recognized in the latter three.

Lines 153: I wouldn’t say that mass extinctions are non-selective or only selective agains small-bodied taxa. Rather, mass extinctions tend to be differently selective than background times. Some traits that provide extinction resistance in background time do not provide protection during mass extinctions. Jablonski (1986 Science) and Payne & Finnegan (2007 PNAS) found that geographic range protects against extinctions during background but not mass extinction intervals. Payne et al. (2016 Science) found that pelagic chordates and mollusks were select for extinction during all mass extinction intervals and small-bodied chordates and mollusks during some mass extinctions. During the Permian mass extinction, marine animals that were “physiologically buffered” preferentially survived (Knoll et al. 2007 EPSL).

Lines 162: This paragraph seems to be only about marine extinction risk. However, Munstermann et al. 2021 is a study of terrestrial vertebrates only.

Lines 255-256. Yes, comparing rates computed for genera vs. species is a problem. However, different researchers have attempted to resolve the issue—of course imperfectly and with assumptions. Payne et al. (2016 Science), for example “downgrades” modern taxonomic data to the genus-level for comparison with fossil rates. More commonly, information such as the genus to species ratio is used to estimate species-level extinction rates from genus-level data (Jablonski 1994 Phil. Trans. Ro. So.). Barnosky et al. (2011 Nature) does this particularly well by using estimated species-level thresholds for mass extinctions, then estimating the amount of time needed to get to that level based on Red List extinction threats. Given the challenges of correlating fossil species-level occurrences globally, some flavor of these solutions is probably the best we can do—at least for now. By ending the paragraph by stating that the problem is open, the reasonable solutions that have already been proposed and applied are ignored or dismissed.

Review: A review of recent and future marine extinctions — R1/PR9

Conflict of interest statement

Reviewer declares none.

Comments

Comments to Author: I commend the authorʻs on doing a nice job of revising this manuscript to address my comments, as well as those of the other reviewers and the editors. It is very much improved from the previous version and will make a very nice contribution to the literature.

Recommendation: A review of recent and future marine extinctions — R1/PR10

Comments

Comments to Author: Thank you for conducting such a thorough revision of your manuscript. This has now been considered by myself and by two of the original reviewers. As you will see, one reviewer is fully satisfied with your revisions, while the other has some remaining minor concerns and suggestions. My own view is that the more ‘major’ of these suggestions, which would require more substantial rewriting and restructuring, are beyond the scope of your ms. Within the constraints of the ms format, I think you have produced a coherent and complete piece with a clear viewpoint, and while I can see that adopting the reviewer’s suggestions in full would strengthen some aspects, this would necessarily be at the expense of others. Therefore I am recommending that we accept your manuscript in its current form, as I believe it will stimulate discussion in this important area. However, I would strongly encourage you to consider if some of the more minor suggestions from reviewer 2 could be incorporated at this stage, to further improve your work.

Decision: A review of recent and future marine extinctions — R1/PR11

Comments

No accompanying comment.