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Dissection of a metal-ion-mediated conformational change in Tetrahymena ribozyme catalysis

Published online by Cambridge University Press:  20 August 2002

SHU-OU SHAN
Affiliation:
Department of Biochemistry, Stanford University, Stanford, California 94305-5307, USA Present address: Howard Hughes Medical Institute and Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, California 94143-0448, USA.
DANIEL HERSCHLAG
Affiliation:
Department of Biochemistry, Stanford University, Stanford, California 94305-5307, USA
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Abstract

Conformational changes are often required for the biological function of RNA molecules. In the Tetrahymena group I ribozyme reaction, a conformational change has been suggested to occur upon binding of the oligonucleotide substrate (S) or the guanosine nucleophile (G), leading to stronger binding of the second substrate. Recent work showed that the two substrates are bridged by a metal ion that coordinates both the nonbridging reactive phosphoryl oxygen of S and the 2′-OH of G. These results suggest that the energy from the metal ion[bull ]substrate interactions is used to drive the proposed conformational change. In this work, we provide an experimental test for this model. The results provide strong support for the proposed conformational change and for a central role of the bridging metal ion in this change. The results from this work, combined with previous data, allow construction of a two-state model that quantitatively accounts for all of the observations in this and previous work. This model provides a conceptual and quantitative framework that will facilitate understanding and further probing of the energetic and structural features of this conformational change and its role in catalysis.

Type
REPORTS
Copyright
2002 RNA Society

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