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The effect of ageing and short-term dietary restriction on the epigenetic, transcriptomic and phenotypic profile of base excision repair in mouse brain and liver

Published online by Cambridge University Press:  19 October 2012

J. Górniak ,
S. A. S. Langie ,
K. Cameron ,
T. von Zglinicki  and
J. C. Mathers
J. Górniak
Affiliation:
Human Nutrition Research Centre and Centre for Brain Ageing and Vitality, Institute for Ageing and Health, Newcastle University, Newcastle upon Tyne, NE4 5PL, UK
S. A. S. Langie
Affiliation:
Human Nutrition Research Centre and Centre for Brain Ageing and Vitality, Institute for Ageing and Health, Newcastle University, Newcastle upon Tyne, NE4 5PL, UK
K. Cameron
Affiliation:
Human Nutrition Research Centre and Centre for Brain Ageing and Vitality, Institute for Ageing and Health, Newcastle University, Newcastle upon Tyne, NE4 5PL, UK
T. von Zglinicki
Affiliation:
Human Nutrition Research Centre and Centre for Brain Ageing and Vitality, Institute for Ageing and Health, Newcastle University, Newcastle upon Tyne, NE4 5PL, UK
J. C. Mathers
Affiliation:
Human Nutrition Research Centre and Centre for Brain Ageing and Vitality, Institute for Ageing and Health, Newcastle University, Newcastle upon Tyne, NE4 5PL, UK
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Abstract

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Information
Proceedings of the Nutrition Society , Volume 71 , Issue OCE2: Summer Meeting hosted by the Irish Section, 16–19 July 2012, Translational nutrition: integrating research, practice and policy , 2012 , E56
Copyright
Copyright © The Authors 2012

Accumulation of unrepaired DNA damage has profound effects on cell function which may cause the characteristic features of ageing. Base excision repair (BER) is the primary mechanism used by cells to repair oxidative DNA damage. However it is thought that BER mechanisms become less effective with age. Evidence suggests that epigenetic events contribute to the ageing process and may be functionally important through regulation of gene expression. Dietary restriction (DR) increases longevity in several animal species and is an important model for studies of nutritional modulation of ageing.

In this study brain and liver from male C57BL6 mice were analysed for methylation and expression of Ogg1 and Apex (enzymes involved in the first 2 steps of the BER pathway) using pyrosequencing and RT-qPCR respectively. BER DNA incision activity was assessed using the in vitro comet-based assay( Reference Langie, Cameron and Waldron 1 ). Tissues were obtained from animals aged 6, 17 and 30 months fed ad libitum (AL) diet and 17 month old mice exposed to 26% DR for 3 months.

Table 1. Methylation and expression of BER genes and repair in ageing brain and liver.

Methylation in the brain was higher in older animals (P>0.05) while in the liver it decreased with age for Apex (P=0.03) and increased for Ogg1 (P>0.05). Expression of Ogg1 and Apex genes decreased with age in the brain (P=0.001) and liver (P>0.05). BER DNA incision activity decreased with age in the brain (P>0.05) and increased in the liver (P=0.02).

Table 2. Effect of DR on methylation and expression of BER genes and repair in brain and liver

DR decreased methylation in the brain for Apex (P=0.02) and Ogg1 (P>0.05) and increased methylation in livers for Apex (P=0.02) and Ogg1 (P>0.05) gene promoters. Expression of both genes was up-regulated (P=0.01) in DR compared to AL animals in the brain but had little effect in the liver. DR had no effect on incision activity in the brain but increased activity in the liver (P=0.01).

Responses of brain and liver to ageing and to DR differed for the 2 genes under study. These differences may result from contrasts in the proliferative nature of the 2 tissues (brain is essentially post-mitotic) as well as different roles of the enzymes in the BER pathway and other cellular mechanisms. Short-term DR affected the methylation and expression status of the target genes to some degree but these did not translate into detectable changes in BER. Further work will determine effects of long-term dietary restriction on the DNA repair mechanisms during the ageing process.

This work was funded by BBSRC as part of the Lifelong Health and Wellbeing Initiative.

References

1. Langie, SAS, Cameron, KM, Waldron, KJ et al. (2011) Mutagenesis 26, 461–471.CrossRefGoogle Scholar
Figure 0

Table 1. Methylation and expression of BER genes and repair in ageing brain and liver.

Figure 1

Table 2. Effect of DR on methylation and expression of BER genes and repair in brain and liver