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Phylogenetic relationship of Parmelia lindmanii (Parmeliaceae) inferred by analysis of its nuITS rDNA sequence

Published online by Cambridge University Press:  03 June 2010

Sionara ELIASARO ,
Leonardo M. CRUZ ,
Marcello IACOMINI ,
Fabio de OLIVEIRA PEDROSA  and
Lucimara M. C. CORDEIRO
Sionara ELIASARO
Affiliation:
Departamento de Botânica, Universidade Federal do Paraná, CP 19.046, CEP 81.531-980, Curitiba, PR, Brazil.
Leonardo M. CRUZ
Affiliation:
Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, CP 19.046, CEP 81.531-980, Curitiba, PR, Brazil.
Marcello IACOMINI
Affiliation:
Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, CP 19.046, CEP 81.531-980, Curitiba, PR, Brazil.
Fabio de OLIVEIRA PEDROSA
Affiliation:
Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, CP 19.046, CEP 81.531-980, Curitiba, PR, Brazil.
Lucimara M. C. CORDEIRO*
Affiliation:
Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, CP 19.046, CEP 81.531-980, Curitiba, PR, Brazil.
*
E-mail: lucimaramcc@ufpr.br
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Abstract

Using the nuclear ITS (nuITS) region of the ribosomal DNA and an MP/Bayesian approach, a phylogenetic study was carried out to evaluate the relationship of Parmelia lindmanii with other members of the parmelioid lichen group. Our results showed that P. lindmanii does not belong to the genus Myelochroa, as previously proposed, but is within the clade containing the type species of Parmelinella.

Keywords

BulbothrixHypotrachyna-cladeMyelochroaParmelinella
Type
Research Article
Information
The Lichenologist , Volume 42 , Issue 4 , July 2010 , pp. 423 - 428
Copyright
Copyright © British Lichen Society 2010

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References

Blanco, O., Crespo, A., Divakar, P. K., Esslinger, T. L., Hawksworth, D. L. & Lumbsch, H. T. (2004) Melanelixia and Melanohalea, two new genera segregated from Melanelia (Parmeliaceae) based on molecular and morphological data. Mycological Research 108: 873–884.CrossRefGoogle ScholarPubMed
Blanco, O., Crespo, A., Ree, R. H. & Lumbsch, H. T. (2006) Major clades of parmelioid lichens (Parmeliaceae, Ascomycota) and the evolution of their morphological and chemical diversity. Molecular Phylogenetics and Evolution 39: 52–69.CrossRefGoogle ScholarPubMed
Crespo, A., Lumbsch, H. T., Mattsson, J.-E., Blanco, O., Divakar, P. K., Articus, K., Wiklund, E., Bawingan, P. A. & Wedin, M. (2007) Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene. Molecular Phylogenetics and Evolution 44: 812–824.CrossRefGoogle ScholarPubMed
Cubero, O. F., Crespo, A., Fatehi, J. & Bridge, P. D. (1999) DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi. Plant Systematics and Evolution 216: 243–249.CrossRefGoogle Scholar
Divakar, P. K., Crespo, A., Blanco, O. & Lumbsch, H. T. (2006) Phylogenetic significance of morphological characters in the tropical Hypotrachyna clade of parmelioid lichens (Parmeliaceae, Ascomycotina). Molecular Phylogenetics and Evolution 40: 448–458.CrossRefGoogle Scholar
Eliasaro, S. & Adler, M. T. (2000) The species of Canomaculina, Myelochroa, Parmelinella, and Parmelinopsis (Parmeliaceae, lichenized Ascomycotina) from the “Segundo Planalto” in the state of Paraná, Brazil. Acta Botanica Brasilica 14(2): 141–149.CrossRefGoogle Scholar
Elix, J. A. & Hale, M. E. (1987). Canomaculina, Myelochroa, Parmelinella, Parmelinopsis and Parmotremopsis, five new genera in the Parmeliaceae (Lichenized Ascomycotina). Mycotaxon 29: 233–244.Google Scholar
Elix, J. A., Johnston, J. & Verdon, D. (1986) Canoparmelia, Paraparmelia and Relicinopsis, three new genera in the Parmeliaceae (lichenized Ascomycotina). Mycotaxon 27: 271–282.Google Scholar
Esslinger, T. L. (1981) Almbornia, a new lichen genus from South Africa. Nordic Journal of Botany. 1: 125–127.CrossRefGoogle Scholar
Ewing, B., & Green, P. (1998) Base-calling of automated sequencer using Phred. II. Error probabilities. Genome Research 8: 186–194.CrossRefGoogle ScholarPubMed
Ewing, B., Hillier, L., Wendi, M. C. & Green, P. (1998) Base-calling of automated sequencer traces using Phred. I. Accuracy assessment, Genome Research 8: 175–185.CrossRefGoogle ScholarPubMed
Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783–791.CrossRefGoogle ScholarPubMed
Gardes, M. & Bruns, T. D. (1993) ITS primers with enhanced specificity for basidiomycetes. Application for the identification of mycorrhizae and rusts. Molecular Ecology 2: 113–118.CrossRefGoogle ScholarPubMed
Gordon, D., Abajian, C. & Green, P. (1998) Consed: a graphical tool for sequence finishing. Genome Research 8: 195–202.CrossRefGoogle ScholarPubMed
Hale, M. E. (1974a) New combinations in the lichen genus Parmotrema. Phytologia 28: 333–339.Google Scholar
Hale, M. E. (1974b) Delimitation of the lichen genus Hypotrachyna (Vainio) Hale. Phytologia 28: 340–341.Google Scholar
Hale, M. E. (1974c) Bulbothrix, Parmelina, Relicina, and Xanthoparmelia, four new genera in the Parmeliaceae (Lichenes). Phytologia 28: 479–490.Google Scholar
Hale, M. E. (1984) Flavopunctelia, a new genus in the Parmeliaceae (Ascomycotina). Mycotaxon 20: 681–682.Google Scholar
Hale, M. E. (1986) Flavoparmelia, a new genus in the lichen family Parmeliaceae (Ascomycotina). Mycotaxon 25: 603–605.Google Scholar
Hale, M. E. (1988) Namakwa, a new lichen genus in the Parmeliaceae (Ascomycotina: Parmeliaceae). Mycotaxon 32: 169–174.Google Scholar
Hale, M. E. (1989) A new lichen genus Psiloparmelia Hale (Ascomycotina: Parmeliaceae). Mycotaxon 35: 41–44.Google Scholar
Hale, M. E. & Fletcher, A. (1990) Rimelia Hale & Fletcher, a new lichen genus (Ascomycotina: Parmeliaceae). Bryologist 93: 23–29.CrossRefGoogle Scholar
Hale, B.W. & DePriest, P.T. (1999). Mason E. Hale's list of epithets in the parmelioid genera. Bryologist 102: 462–544.CrossRefGoogle Scholar
Hawksworth, D. L., Blanco, O., Divakar, P. K., Ahti, T. & Crespo, A. (2008). A first checklist of parmelioid and similar lichens in Europe and some adjacent territories, adopting revised generic circumscriptions and with indications of species distributions. Lichenologist 40: 1–21.CrossRefGoogle Scholar
Henssen, A. (1992) Placoparmelia patagonica, a new lichen genus and species from Argentina (Parmeliaceae). Lichenologist 24: 133–142.CrossRefGoogle Scholar
Huelsenbeck, J. P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755.CrossRefGoogle ScholarPubMed
Krog, H. (1982) Punctelia, a new lichen genus in the Parmeliaceae. Nordic Journal of Botany 2: 287–292.CrossRefGoogle Scholar
Kurokawa, S. (1991) Rimeliella, a new genus related to Rimelia of the Parmeliaceae. Annals of the Tsukuba Botanical Garden 10: 1–14.Google Scholar
Kurokawa, S. & Arakawa, S. (1997) Revision of Japanese species of Myelochroa (Parmeliaceae). Bulletin of the Botanic Gardens of Toyama 2: 23–43.Google Scholar
Nash, T. H. III, Hafellner, J. & Common, R. S. (1990) Omphalora, a new genus in the Parmeliaceae. Lichenologist 22: 355–365.CrossRefGoogle Scholar
Nei, M. & Kumar, S. (2000) Molecular Evolution and Phylogenetics. New York: Oxford University Press.CrossRefGoogle Scholar
Nylander, J. A. A. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University. Available from http://www.abc.se/~nylander/Google Scholar
Rodriguez, F., Oliver, J. F., Martin, A. & Medina, J. R. (1990) The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142: 485–501.CrossRefGoogle ScholarPubMed
Sipman, H. J. M. (1986) Notes on the lichen genus Everniastrum (Parmeliaceae). Mycotaxon 26: 235–251.Google Scholar
Spielmann, A. A. & Marcelli, M. P. (2008). Parmeliaceae (Ascomycota liquenizados) nos barrancos e peraus da encosta da Serra Geral, Vale do Rio Pardo, Rio Grande do Sul, Brasil. II. Gêneros Canoparmelia, Hypotrachyna, Myelochroa, Parmelinopsis e Relicina. Iheringia 63: 193–212.Google Scholar
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596–1599.CrossRefGoogle ScholarPubMed
White, T. J., Bruns, T. D., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal DNA genes for phylogenies. In PCR Protocols: a Guide to Methods and Applications (Innis, M. A., Gelfand, D. H., Sninsky, J. J., & White, T. J, eds): 315–322. San Diego: Academic Press.Google Scholar