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Extraction and purification of total RNA from banana tissues (small scale).

Published online by Cambridge University Press:  17 July 2008

Didier Mbéguié-A-Mbéguié
Affiliation:
 CIRAD, UMR Qualitrop, Station de Neufchâteau Sainte-Marie, 97130 Capesterre-Belle-Eau, Guadeloupe, France
Bernard Fils-Lycaon
Affiliation:
 INRA, UMR 1270 Qualitrop, Domaine de Duclos, Prise d’eau, 97170 Petit-Bourg, Guadeloupe, France ; Bernard.Fils-Lycaon@antilles.inra.fr, Colette.Galas@antilles.inra.fr, Rose-Marie.Gomez@antilles.inra.fr
Marc Chillet
Affiliation:
 CIRAD-Persyst, UMR Qualisud, Fac. Farm., Univ. Sao Paulo, avenida Lineu Prestes, 580, Bloco 14, 05508-900 São Paulo – SP, Brasil ; marc.chillet@cirad.fr
Olivier Hubert
Affiliation:
 CIRAD, UMR Qualisud, Station de Neufchâteau Sainte-Marie, 97130 Capesterre-Belle-Eau, Guadeloupe, France ; olivier.hubert@cirad.fr
Colette Galas
Affiliation:
 INRA, UMR 1270 Qualitrop, Domaine de Duclos, Prise d’eau, 97170 Petit-Bourg, Guadeloupe, France ; Bernard.Fils-Lycaon@antilles.inra.fr, Colette.Galas@antilles.inra.fr, Rose-Marie.Gomez@antilles.inra.fr
Rose-Marie Gomez
Affiliation:
 INRA, UMR 1270 Qualitrop, Domaine de Duclos, Prise d’eau, 97170 Petit-Bourg, Guadeloupe, France ; Bernard.Fils-Lycaon@antilles.inra.fr, Colette.Galas@antilles.inra.fr, Rose-Marie.Gomez@antilles.inra.fr
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Abstract

Introduction. This protocol aims at preparing total RNA for gene expression analysis by Northern blots, RT-PCR and real-time quantitative PCR; cDNA isolation by RT-PCR; and cDNA library construction. The principle, key advantages, starting plant material, time required for obtaining total RNA and expected results are presented. Materials and methods. This part describes the required materials and the 27 steps necessary for preparing RNA from peel and pulp fruit tissue: preparation of plant tissue powder, preparation of the complete RNA extraction buffer and isolation of RNA from ground banana fruit tissue. Results. Extraction of total RNA by the method described makes it possible to achieve electrophoresis under denatured conditions and in vitro reverse transcription. An example for Northern blot analysis is illustrated.

Type
Research Article
Copyright
© CIRAD, EDP Sciences, 2008

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References

Wan, C.-Y., Wilkins, T.A., A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Grosypium hirsutum L.), Anal. Biochem. 223 (1994) 712. CrossRef