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Likelihood-based inference for Matérn type-III repulsive point processes

Published online by Cambridge University Press:  01 July 2016

Mark L. Huber*
Affiliation:
Duke University
Robert L. Wolpert*
Affiliation:
Duke University
*
Current address: Department of Mathematics and Computer Science, Claremont McKenna College, 850 Columbia Avenue, Claremont, CA 91711, USA. Email address: mhuber@cmc.edu
∗∗ Postal address: Department of Statistical Science and Nicholas School of the Environment, Duke University, Durham, NC 27708-0251, USA. Email address: wolpert@stat.duke.edu
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Abstract

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In a repulsive point process, points act as if they are repelling one another, leading to underdispersed configurations when compared to a standard Poisson point process. Such models are useful when competition for resources exists, as in the locations of towns and trees. Bertil Matérn introduced three models for repulsive point processes, referred to as types I, II, and III. Matérn used types I and II, and regarded type III as intractable. In this paper an algorithm is developed that allows for arbitrarily accurate approximation of the likelihood for data modeled by the Matérn type-III process. This method relies on a perfect simulation method that is shown to be fast in practice, generating samples in time that grows nearly linearly in the intensity parameter of the model, while the running times for more naive methods grow exponentially.

Type
Stochastic Geometry and Statistical Applications
Copyright
Copyright © Applied Probability Trust 2009 

References

Berger, J. O. and Wolpert, R. L. (1984). The Likelihood Principle (IMS Lecture Notes Monogr. Ser. 6), 2nd edn. Institute of Mathematical Statistics, Hayward, CA.Google Scholar
Beskos, A., Papaspiliopoulos, O. and Roberts, G. O. (2006). Retrospective exact simulation of diffusion sample paths with applications. Bernoulli 12, 10771098.CrossRefGoogle Scholar
Brown, T. (1979). Position dependent and stochastic thinning of point processes. Stoch. Process. Appl. 9, 189193.CrossRefGoogle Scholar
Chernoff, H. (1952). A measure of asymptotic efficiency for tests of a hypothesis based on the sum of observations. Ann. Math. Statist. 23, 493507.CrossRefGoogle Scholar
Döge, G. (2001). Perfect simulation for random sequential adsorption of d-dimensional spheres with random radii. J. Statist. Comput. Simul. 69, 141156.CrossRefGoogle Scholar
Dyer, M. and Frieze, A. (1991). Computing the volume of convex bodies: a case where randomness provably helps. In Probabilistic Combinatorics and Its Applications (Proc. Symp. Appl. Math. 44,), ed. Bollobás, B., American Mathematical Society, RI, pp. 123169.CrossRefGoogle Scholar
Feder, J. (1980). Random sequential adsorption. J. Theoret. Biol. 87, 273–254.CrossRefGoogle Scholar
Finegold, L. and Donnell, J. T. (1979). Maximum density of random placing of membrane particles. Nature 278, 443445.CrossRefGoogle ScholarPubMed
Fishman, G. E. (1996). Monte Carlo. Springer, New York.CrossRefGoogle Scholar
Foss, S. G. and Tweedie, R. L. (1998). Perfect simulation and backward coupling. Commun. Statist. Stoch. Models 14, 187203.CrossRefGoogle Scholar
Glass, L. and Tobler, W. R. (1971). Uniform distribution of objects in a homogeneous field: cities on a plain. Nature 233, 6768.CrossRefGoogle Scholar
Häggström, O. and Nelander, K. (1999). On exact simulation of Markov random fields using coupling from the past. Scand. J. Statist. 26, 395411.CrossRefGoogle Scholar
Hastings, W. K. (1970). Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57, 97109.CrossRefGoogle Scholar
Huber, M. (2004). Perfect sampling using bounding chains. Ann. Appl. Prob. 14, 734753.CrossRefGoogle Scholar
Kelly, F. P. and Ripley, B. D. (1976). A note on Strauss's model for clustering. Biometrika, 63, 357360.CrossRefGoogle Scholar
Kendall, W. S. (1998). Perfect simulation for the area-interaction point process. In Probability Towards 2000 (New York, 1995; Lecture Notes Statist. 128), eds Accardi, L. and Heyde, C. C., Springer, New York, pp. 218234.CrossRefGoogle Scholar
Matérn, B. (1986). Spatial Variation (Lecture Notes Statist. 36), 2nd edn. Springer, New York.CrossRefGoogle Scholar
Metropolis, N. C. et al. (1953). Equations of state calculations by fast computing machines. J. Chem. Phys. 21, 10871092.CrossRefGoogle Scholar
Møller, J. (1999). Perfect simulation of conditionally specified models. J. R. Statist. Soc. B 61, 251264.CrossRefGoogle Scholar
Møller, J., Pettitt, A. N., Reeves, R. and Berthelsen, K. K. (2006). An efficient Markov chain Monte Carlo method for distributions with intractable normalising constants. Biometrika, 93, 451458.CrossRefGoogle Scholar
Murray, I., Ghahramani, Z. and MacKay, D. J. C. (2006). MCMC for doubly-intractable distributions. In Proc. 22nd Ann. Conf. on Uncertainty in Artificial Intelligence, eds Dechter, R. and Richardson, T., AUAI Press, Arlington, VA, pp. 359366.Google Scholar
Pálasti, I. (1960). On some random space filling problems. Publ. Math. Inst. Hung. Acad. Sci. 5, 353359.Google Scholar
Ripley, B. D. and Kelly, F. P. (1977). Markov point processes. J. London Math. Soc. 15, 188192.CrossRefGoogle Scholar
Schaaf, P., Voegel, J.-C. and Senger, B. (1998). Irreversible deposition/adsorption processes on solid surfaces. Annales de Physique 23, 189.CrossRefGoogle Scholar
Solomon, H. (1967). Random packing density. In Proc. 5th Berkeley Symp. Math. Statist. Prob. Vol. 3, eds Le Cam, L. M. and Neyman, J., University of California Press, Berkeley, CA, pp. 119134.Google Scholar
Štefankovič, D., Vempala, S. and Vigoda, E. (2009). Adaptive simulated annealing: a near-optimal connection between sampling and counting. J. Assoc. Comput. Mach. 56, 36 pp.CrossRefGoogle Scholar
Stoyan, D. (1979). Interrupted point processes. Biometrical J. 21, 607610.CrossRefGoogle Scholar
Stoyan, D. and Stoyan, H. (1985). On one of Matérn's hard-core point process models. Math. Nachr. 122, 205214.CrossRefGoogle Scholar
Stoyan, D., Kendall, W. S. and Mecke, J. (1995). Stochastic Geometry and Its Applications, 2nd edn. John Wiley, Chichester.Google Scholar
Strand, L. (1972). A model for stand growth. In IUFRO 3rd Conf. Advisory Group of Forest Statisticians, Institut National de la Recherche Agronomique, Paris, pp. 207216.Google Scholar
Strauss, D. J. (1975). A model for clustering. Biometrika, 62, 467475.CrossRefGoogle Scholar
Tanemura, M. (1979). On random complete packing by discs. Ann. Inst. Statist. Math. B 31, 351365.CrossRefGoogle Scholar
Van Lieshout, M. N. M. (2006). Maximum likelihood estimation for random sequential adsorption. Adv. Appl. Prob. 38, 889898.CrossRefGoogle Scholar
Von Neumann, J. (1951). Various techniques used in connection with random digits. NBS Appl. Math. Ser. 12, 3638.Google Scholar
Wilson, D. B. (2000). How to couple from the past using a read-once source of randomness. Random Structures Algorithms 16, 85113.3.0.CO;2-H>CrossRefGoogle Scholar