Skip to main content Accessibility help
×
Hostname: page-component-77c89778f8-9q27g Total loading time: 0 Render date: 2024-07-20T11:18:53.016Z Has data issue: false hasContentIssue false

2 - Screening approaches for genetic toxicity

from I - SPECIFIC AREAS OF PREDICTIVE TOXICOLOGY

Published online by Cambridge University Press:  06 December 2010

Jinghai J. Xu
Affiliation:
Merck Research Laboratory, New Jersey
Laszlo Urban
Affiliation:
Novartis Institutes for Biomedical Research, Massachusetts
Get access

Summary

INTRODUCTION

Assessing human cancer risk associated with exposure to chemicals is an essential component of the safety assessment paradigm for drugs, cosmetics, and industrial chemicals. The current testing paradigm mainly relies on in vitro genotoxicity testing followed by 2-year carcinogenicity bioassays in mice and rats. Because of the technical complexity, high costs, and animal usage associated with 2-year bioassays, the genetic toxicology battery has been designed to be highly sensitive in predicting chemical carcinogenicity. In fact, the genotoxicity testing is used as a surrogate for carcinogenicity testing and is required for initiation of clinical trials and for most industrial chemicals. Since the beginning of genotoxicity testing in the early 1970s, many different test systems have been developed and used. Since no single test is capable of detecting all genotoxic agents, present routine genotoxicity evaluation of pharmaceutical compounds incorporates a standard battery of in vitro and in vivo assays. These tests include (a) bacterial reverse-mutation tests, (b) in vitro tests for chromosomal damage (cytogenetic assays and in vitro mouse lymphoma thymidine kinase assay), and (c) an in vivo test for chromosomal damage (micronucleus test). To further enhance human genotoxic risk assessment, the international ICH working group together with other scientific groups have also suggested additional tests such as the measurement of DNA adducts, DNA strand breaks, DNA repair, and recombination to complement the standard battery in certain cases.

Recent progress in molecular biology, genomics, and bioinformatics has revolutionized drug discovery research.

Type
Chapter
Information
Publisher: Cambridge University Press
Print publication year: 2010

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Kirkland, D, Aardema, M, Henderson, L, et al. Evaluation of the ability of a battery of three in vitro genotoxicity tests to discriminate rodent carcinogens and non-carcinogens: I. Sensitivity, specificity and relative predictivity. Mutat Res. 2005;584(1–2):1–256.CrossRefGoogle ScholarPubMed
Kirkland, D, Aardema, M, Muller, L, et al. Evaluation of the ability of a battery of three in vitro genotoxicity tests to discriminate rodent carcinogens and non-­carcinogens: II. Further analysis of mammalian cell results, relative predictivity and tumour profiles. Mutat Res. 2006;608(1):29–42.CrossRefGoogle ScholarPubMed
Jacobs, A, Jacobson-Kram, D. Human carcinogenic risk evaluation, Part III: Assessing cancer hazard and risk in human drug development. Toxicol Sci. 2004;81(2):260–262.CrossRefGoogle ScholarPubMed
Muller, L, Kikuchi, Y, Probst, G, et al. ICH-harmonised guidances on genotoxicity testing of pharmaceuticals: evolution, reasoning and impact. Mutat Res. 1999;436(3):195–225.CrossRefGoogle ScholarPubMed
Thybaud, V, Aardema, M, Clements, J, et al. Strategy for genotoxicity testing: Hazard identification and risk assessment in relation to in vitro testing. Mutat Res. 2007;627(1):41–58.CrossRefGoogle ScholarPubMed
Aubrecht, J, Caba, E. Gene expression profile analysis: An emerging approach to investigate mechanisms of genotoxicity. Pharmacogenomics. 2005;6(4):419–428.CrossRefGoogle ScholarPubMed
Ames, BN, Durston, WE, Yamasaki, E, et al. Carcinogens are mutagens: A simple test system combining liver homogenates for activation and bacteria for detection. Proc Natl Acad Sci USA. 1973;70(8):2281–2285.CrossRefGoogle ScholarPubMed
Muller, A, Boitier, E, Hu, T, et al. Laboratory variability does not preclude identification of biological functions impacted by hydroxyurea. Environ Mol Mutagen. 2005;46(4):221–235.CrossRefGoogle Scholar
Houk, VS, Schalkowsky, S, Claxton, LD. Development and validation of the spiral Salmonella assay: An automated approach to bacterial mutagenicity testing. Mutat Res. 1989;223(1):49–64.CrossRefGoogle ScholarPubMed
Rexroat, MA, Oberly, TJ, Bewsey, BJ, et al. The gradient plate assay: A modified Ames assay used as a prescreen for the identification of bacterial mutagens. Mutat Res. 1995;341(3):185–192.CrossRefGoogle ScholarPubMed
Brooks, TM. The use of a streamlined bacterial mutagenicity assay, the MINISCREEN. Mutagenesis. 1995;10(5):447–448.CrossRefGoogle ScholarPubMed
Falck, K, Partanen, P, Sorsa, M, et al. Mutascreen, an automated bacterial mutagenicity assay. Mutat Res. 1985;150(1–2):119–125.CrossRefGoogle ScholarPubMed
Gee, P, Maron, DM, Ames, BN. Detection and classification of mutagens: A set of base-specific Salmonella tester strains. Proc Natl Acad Sci USA. 1994;91(24):11606–11610.CrossRefGoogle ScholarPubMed
Ulitzur, S. Bioluminescence test for genotoxic agents. Methods Enzymol. 1986;133:264–274.CrossRefGoogle ScholarPubMed
Sun, TS, Stahr, HM. Evaluation and application of a bioluminescent bacterial genotoxicity test. J AOAC Int. 1993;76(4):893–898.Google ScholarPubMed
Cote, C, Blaise, C, Delisle, CE, et al. A miniaturized Ames mutagenicity assay employing bioluminescent strains of Salmonella typhimurium. Mutat Res. 1995;345(3–4): 137–146.CrossRefGoogle ScholarPubMed
Cariello, NF, Narayanan, S, Kwanyuen, P, et al. A novel bacterial reversion and forward mutation assay based on green fluorescent protein. Mutat Res. 1998; 414(1–3):95–105.CrossRefGoogle ScholarPubMed
Aubrecht, J, Osowski, JJ, Persaud, P, et al. Bioluminescent Salmonella reverse mutation assay: A screen for detecting mutagenicity with high throughput attributes. Mutagenesis. 2007;22(5):335–342.CrossRefGoogle ScholarPubMed
Ackerman, J, Sharma, R, Hitchcock, J, et al. Inter-laboratory evaluation of the bioluminescent Salmonella reverse mutation assay using 10 model chemicals. Mutagenesis. 2009;24(5):433–438.CrossRefGoogle ScholarPubMed
Parry, EM, Parry, JM, Corso, C, et al. Detection and characterization of mechanisms of action of aneugenic chemicals. Mutagenesis. 2002;17(6):509–521.CrossRefGoogle ScholarPubMed
Bryce, SM, Bemis, JC, Avlasevich, SL, et al. In vitro micronucleus assay scored by flow cytometry provides a comprehensive evaluation of cytogenetic damage and cytotoxicity. Mutat Res. 2007;630(1–2):78–91.CrossRefGoogle ScholarPubMed
Frieauff, W, Potter-Locher, F, Cordier, A, et al. Automatic analysis of the in vitro micronucleus test on V79 cells. Mutat Res. 1998;413(1):57–68.CrossRefGoogle ScholarPubMed
Smolewski, P, Ruan, Q, Vellon, L, et al. Micronuclei assay by laser scanning cytometry. Cytometry. 2001;45(1):19–26.3.0.CO;2-G>CrossRefGoogle ScholarPubMed
Decordier, I, Papine, A, Plas, G, et al. Automated image analysis of cytokinesis-blocked micronuclei: An adapted protocol and a validated scoring procedure for biomonitoring. Mutagenesis. 2009;24(1):85–93.CrossRefGoogle Scholar
Diaz, D, Scott, A, Carmichael, P, et al. Evaluation of an automated in vitro micronucleus assay in CHO-K1 cells. Mutat Res. 2007;630(1–2):1–13.CrossRefGoogle ScholarPubMed
Varga, D, Johannes, T, Jainta, S, et al. An automated scoring procedure for the micronucleus test by image analysis. Mutagenesis. 2004;19(5):391–397.CrossRefGoogle ScholarPubMed
Bryce, SM, Avlasevich, SL, Bemis, JC, et al. Interlaboratory evaluation of a flow cytometric, high content in vitro micronucleus assay. Mutat Res. 2008;650(2): 181–195.CrossRefGoogle ScholarPubMed
Avlasevich, SL, Bryce, SM, Cairns, SE, et al. In vitro micronucleus scoring by flow cytometry: Differential staining of micronuclei versus apoptotic and necrotic chromatin enhances assay reliability. Environ Mol Mutagen. 2006;47(1):56–66.CrossRefGoogle ScholarPubMed
Hartmann, A, Schumacher, M, Plappert-Helbig, U, et al. Use of the alkaline in vivo Comet assay for mechanistic genotoxicity investigations. Mutagenesis. 2004;19(1): 51–59.CrossRefGoogle ScholarPubMed
Kiskinis, E, Suter, W, Hartmann, A. High throughput Comet assay using 96-well plates. Mutagenesis. 2002;17(1):37–43.CrossRefGoogle ScholarPubMed
Schiestl, RH. Nonmutagenic carcinogens induce intrachromosomal recombination in yeast. Nature. 1989;337(6204):285–288.CrossRefGoogle Scholar
Carls, N, Schiestl, RH. Evaluation of the yeast DEL assay with 10 compounds selected by the International Program on Chemical Safety for the evaluation of short-term tests for carcinogens. Mutat Res. 1994;320(4):293–303.CrossRefGoogle ScholarPubMed
Galli, A, Schiestl, RH. Effects of DNA double-strand and single-strand breaks on intrachromosomal recombination events in cell-cycle-arrested yeast cells. Genetics. Jul 1998;149(3):1235–1250.Google ScholarPubMed
Galli, A, Schiestl, RH. Hydroxyurea induces recombination in dividing but not in G1 or G2 cell cycle arrested yeast cells. Mutat Res. 1996;354(1):69–75.CrossRefGoogle ScholarPubMed
Kirpnick, Z, Homiski, M, Rubitski, E, et al. Yeast DEL assay detects clastogens. Mutat Res. 2005;582(1–2):116–134.CrossRefGoogle ScholarPubMed
Sobol, Z, Engel, ME, Rubitski, E, et al. Genotoxicity profiles of common alkyl halides and esters with alkylating activity. Mutat Res. 2007;633(2):80–94.CrossRefGoogle ScholarPubMed
Galli, A, Schiestl, RH. Salmonella test positive and negative carcinogens show different effects on intrachromosomal recombination in G2 cell cycle arrested yeast cells. Carcinogenesis. 1995;16(3):659–663.CrossRefGoogle ScholarPubMed
Galli, A, Schiestl, RH. Cell division transforms mutagenic lesions into deletion-­recombinagenic lesions in yeast cells. Mutat Res. 1999;429(1):13–26.CrossRefGoogle ScholarPubMed
Ku, WW, Aubrecht, J, Mauthe, RJ, et al. Genetic Toxicity Assessment: Employing the Best Science for Human Safety Evaluation Part VII: Why Not Start with a Single Test: A Transformational Alternative to Genotoxicity Hazard and Risk Assessment. Toxicol Sci. 2007;99(1):20–25.CrossRefGoogle Scholar
Bishop, AJ, Schiestl, RH. Homologous Recombination and Its Role in Carcinogenesis. J Biomed Biotechnol. 2002;2(2):75–85.CrossRefGoogle ScholarPubMed
Hontzeas, N, Hafer, K, Schiestl, RH. Development of a microtiter plate version of the yeast DEL assay amenable to high-throughput toxicity screening of chemical libraries. Mutat Res. 2007;634(1–2):228–234.CrossRefGoogle ScholarPubMed
Fornace, AJ, Jr., Alamo, I, Jr., Hollander, MC. DNA damage-inducible transcripts in mammalian cells. Proc Natl Acad Sci USA. 1988;85(23):8800–8804.CrossRefGoogle ScholarPubMed
Holbrook, NJ, Fornace, AJ, Jr. Response to adversity: molecular control of gene activation following genotoxic stress. New Biol. 1991;3(9):825–833.Google ScholarPubMed
Amundson, SA, Myers, TG, Fornace, AJ, Jr. Roles for p53 in growth arrest and apoptosis: putting on the brakes after genotoxic stress. Oncogene. 1998;17(25):3287–3299.CrossRefGoogle ScholarPubMed
Smith, ML, Fornace, AJ, Jr. Mammalian DNA damage-inducible genes associated with growth arrest and apoptosis. Mutat Res. 1996;340(2–3):109–124.CrossRefGoogle ScholarPubMed
Ben-Israel, O, Ben-Israel, H, Ulitzur, S. Identification and quantification of toxic chemicals by use of Escherichia coli carrying lux genes fused to stress promoters. Appl Environ Microbiol. 1998;64(11):4346–4352.Google ScholarPubMed
Nunoshiba, T, Nishioka, H. ‘Rec-lac test’ for detecting SOS-inducing activity of environmental genotoxic substance. Mutat Res. 1991;254(1):71–77.CrossRefGoogle ScholarPubMed
Oda, Y, Nakamura, S, Oki, I, et al. Evaluation of the new system (umu-test) for the detection of environmental mutagens and carcinogens. Mutat Res. 1985;147(5):219–229.CrossRefGoogle ScholarPubMed
Ptitsyn, LR, Horneck, G, Komova, O, et al. A biosensor for environmental genotoxin screening based on an SOS lux assay in recombinant Escherichia coli cells. Appl Environ Microbiol. 1997;63(11):4377–4384.Google ScholarPubMed
Quillardet, P, Huisman, O, D'Ari, R, et al. The SOS chromotest: Direct assay of the expression of gene sfiA as a measure of genotoxicity of chemicals. Biochimie. 1982;64(8–9):797–801.CrossRefGoogle ScholarPubMed
Vollmer, AC. Genotoxic sensors. Methods Mol Biol. 1998;102:145–151.Google ScholarPubMed
Cahill, PA, Knight, AW, Billinton, N, et al. The GreenScreen genotoxicity assay: A screening validation programme. Mutagenesis. 2004;19(2):105–119.CrossRefGoogle ScholarPubMed
Lichtenberg-Frate, H, Schmitt, M, Gellert, G, et al. A yeast-based method for the detection of cyto and genotoxicity. Toxicol In Vitro. 2003;17(5–6):709–716.CrossRefGoogle ScholarPubMed
Todd, MD, Lin, X, Stankowski, LF, Jr., et al. Toxicity screening of a combinatorial library: Correlation of cytotoxicity and gene induction to compound structure. J Biomol Screen. 1999;4(5):259–268.CrossRefGoogle ScholarPubMed
Duerksen-Hughes, PJ, Yang, J, Ozcan, O. p53 induction as a genotoxic test for twenty-five chemicals undergoing in vivo carcinogenicity testing. Environ Health Perspect. 1999;107(10):805–812.CrossRefGoogle ScholarPubMed
Yang, J, Duerksen-Hughes, P. A new approach to identifying genotoxic ­carcinogens: p53 induction as an indicator of genotoxic damage. Carcinogenesis. 1998;19(6):1117–1125.CrossRefGoogle ScholarPubMed
Ko, LJ, Prives, C. p53: Puzzle and paradigm. Genes Dev. 1996;10(9):1054–1072.CrossRefGoogle ScholarPubMed
Linke, SP, Clarkin, KC, Di Leonardo, A, et al. A reversible, p53-dependent G0/G1 cell cycle arrest induced by ribonucleotide depletion in the absence of detectable DNA damage. Genes Dev. 1996;10(8):934–947.CrossRefGoogle ScholarPubMed
Lopes, UG, Erhardt, P, Yao, R, et al. p53-dependent induction of apoptosis by proteasome inhibitors. J Biol Chem. 1997;272(20):12893–12896.CrossRefGoogle ScholarPubMed
Lelie, D, Regniers, L, Borremans, B, et al. The VITOTOX test, an SOS bioluminescence Salmonella typhimurium test to measure genotoxicity kinetics. Mutat Res. 1997;389(2–3):279–290.CrossRefGoogle ScholarPubMed
Plaper, A, Jenko-Brinovec, S, Premzl, A, et al. Genotoxicity of trivalent chromium in bacterial cells. Possible effects on DNA topology. Chem Res Toxicol. 2002;15(7):943–949.CrossRefGoogle ScholarPubMed
Aubrecht, J, Narla, RK, Ghosh, P, et al. Molecular genotoxicity profiles of apoptosis-inducing vanadocene complexes. Toxicol Appl Pharmacol. 1999;154(3):228–235.CrossRefGoogle ScholarPubMed
Todd, MD, Lee, MJ, Williams, JL, et al. The CAT-Tox (L) assay: A sensitive and specific measure of stress-induced transcription in transformed human liver cells. Fundam Appl Toxicol. 1995;28(1):118–128.CrossRefGoogle ScholarPubMed
Beard, SE, Capaldi, SR, Gee, P. Stress responses to DNA damaging agents in the human colon carcinoma cell line, RKO. Mutat Res. 1996;371(1–2):1–13.CrossRefGoogle ScholarPubMed
Hastwell, PW, Chai, LL, Roberts, KJ, et al. High-specificity and high-sensitivity genotoxicity assessment in a human cell line: Validation of the GreenScreen HC GADD45a-GFP genotoxicity assay. Mutat Res. 2006;607(2):160–175.CrossRefGoogle Scholar

Save book to Kindle

To save this book to your Kindle, first ensure coreplatform@cambridge.org is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

Available formats
×