Anderson, JA, Churchill, GA, Autrique, JE, Tanksley, SD and Sorrells, ME (1993) Optimizing parental selection for genetic linkage maps. Genome 36: 181–186.
Gupta, PK and Varshney, RK (2000) The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113: 163–185.
Kanazin, V, Talbert, H, See, D, DeCamp, P, Nevo, E and Blake, T (2002) Discovery and assay of single nucleotide polymorphsims in barley (Hordeum vulgare). Plant Molecular Biology 48: 529–537.
Kota, R, Varshney, RK, Thiel, T, Dehmer, KJ and Graner, A (2001a) Generation and comparison of EST-derived SSRs and SNPs in barley (Hordeum vulgare L.). Hereditas 135: 145–151.
Kota, R, Wolf, M, Michalek, W and Graner, A (2001b) Application of DHPLC for mapping of single nucleotide polymorphisms (SNPs) in barley (Hordeum vulgare L.). Genome 44: 523–528.
Kota, R, Varshney, RK, Prasad, M, Zhang, H, Stein, N and Graner, A (2007) .
Li, JZ, Sjakste, TG, Röder, MS and Ganal, MW (2003) Development and genetic mapping of 127 new microsatellite markers in barley. Theoretical and Applied Genetics 107: 1021–1027.
Liedloff, A (1999) .
Liu, ZW, Biyashev, RM and Saghai Maroof, MA (1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theoretical and Applied Genetics 93: 869–876.
Malysheva-Otto, LV, Ganal, MW and Röder, MS (2006) Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.). BMC Genetics 7: 6.
Mantel, N (1967) The detection of disease clustering and a generalized regression approach. Cancer Research 27: 209–220.
Orabi, J, Backes, G, Wolday, A, Yahyaoui, A and Jahoor, A (2007) The Horn of Africa as a centre of barley diversification and a potential domestication site. Theoretical and Applied Genetics 114: 1117–1127.
Pandey, M, Wagner, C, Friedt, W and Ordon, F (2006) Genetic relatedness and population differentiation of Himalayan hulless barley (Hordeum vulgare L.) landraces inferred with SSRs. Theoretical and Applied Genetics 113: 715–729.
Pozzi, C, Rossini, L, Vecchietti, A and Salamini, F (2004) . In: Gupta, PK and Varshney, RK (eds) Cereal Genomics. Dordrecht: Kluwer Academic Publishers, pp. 165–198.
Ramsay, L, Macaulay, M, Ivanissevich, DS, MacLean, K, Cardle, L, Fuller, J, Edwards, KJ, Tuvesson, S, Morgante, M, Massari, A, Maestri, E, Marmiroli, N, Sjakste, T, Ganal, M, Powell, W and Waugh, R (2000) A simple sequence repeat-based linkage map of barley. Genetics 156: 1997–2005.
Röder, MS, Korzun, V, Wendehake, K, Plaschke, J, Tixier, MH, Leroy, P and Ganal, MW (1998) A microsatellite map of wheat. Genetics 149: 2007–2023.
Rohlf, FJ (1998) .
Rostoks, N, Ramsay, L, MacKenzie, K, Cardle, L, Bhat, PR, Roose, ML, Svensson, JT, Stein, N, Varshney, RK, Marshall, DF, Graner, A, Close, TJ and Waugh, R (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences USA 103: 18656–18661.
Russell, JR, Fuller, JD, Macaulay, M, Hatz, BG, Jahoor, A, Powell, W and Waugh, R (1997) Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theoretical and Applied Genetics 95: 714–722.
Russell, J, Booth, A, Fuller, J, Harrower, B, Hedley, P, Machray, G and Powell, W (2004) A comparison of sequence-based polymorphism and haplotype content in transcribed and anonymous regions of the barley genome. Genome 47: 389–398.
Struss, P and Plieske, J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97: 308–315.
Thiel, T, Michalek, W, Varshney, RK and Graner, A (2003) Exploiting EST databases for the development of cDNA derived microsatellite markers in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 106: 411–422.
Varshney, RK, Graner, A and Sorrells, ME (2005) Genic microsatellite markers: features and applications. Trends in Biotechnology 23: 48–55.
Varshney, RK, Grosse, I, Hahnel, U, Thiel, T, Rudd, S, Zhang, H, Prasad, M, Stein, N, Langridge, P and Graner, A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. Theoretical and Applied Genetics 113: 239–250.
Varshney, RK, Beier, U, Khlestkina, EK, Kota, R, Korzun, V, Graner, A and Börner, A (2007a) Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. Theoretical and Applied Genetics 114: 1105–1116.
Varshney, RK, Marcel, TC, Ramsay, L, Russell, J, Röder, M, Stein, N, Waugh, R, Langridge, P, Niks, RE and Graner, A (2007b) A high density barley microsatellite map with 775 SSR loci. Theoretical and Applied Genetics 114: 1091–1103.
Varshney, RK, Thiel, T, Sretenovic-Rajicic, T, Baum, M, Valkoun, J, Guo, P, Grando, S, Ceccarelli, S and Graner, A (2007c) .