Abdurakhmonov, IY, Saha, S, Jenkins, JN, Buriev, ZT, Shermatov, SE, Scheffler, BE, Pepper, AE, Yu, JZ, Kohel, RJ and Abdukarimov, A (2009) Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica
Altschul, SF, Gish, W, Miller, W, Myers, EW and Lipman, DJ (1990) Basic local alignment search tool. Journal of Molecular Biology
Andrade, FH, Sala, RG, Pontaroli, AC and León, A (2015) Chapter 19 – integration of biotechnology, plant breeding and crop physiology: dealing with complex interactions from a physiological perspective. In: Sadras, VO and Calderini, D (eds) Crop Physiology Applications for Genetic Improvement and Agronomy, 2nd edn, Oxford, UK: Elsevier Inc, pp. 487–503.
Ashkani, S, Yusop, MR, Shabanimofrad, M, Azadi, A, Ghasemzadeh, A, Azizi, P and Latif, MA (2015) Allele mining strategies: principles and utilisation for blast resistance genes in rice (Oryza sativa L.). Current Issues in Molecular Biology
Ball, RD (2007) Statistical analysis and experimental design. In: Oraguzie, NC, Rikkerink, EHA, De Silva, HN and Gardiner, SE (eds) Association Mapping in Plants. New York: Springer, pp. 133–196.
Blumenschein, A (1973) Chromosome knob patterns in Latin American maize. Basic Life Science
Brown, AHD (1989) Core collections: a practical approach to genetic resources management. Genome
Brown, AHD and Schoen, DJ (1994) Optimal sampling strategies for core collections of plant genetic resources. In: Loeschcke, V, Tomiuk, J, Jain, SK (eds) Conservation Genetics. Basel, Switzerland: Birkhäuser Verlag, pp. 357–370.
Campos-Bermudez, VA, Fauguel, CM, Tronconi, MA, Casati, P, Presello, DA and Andreo, CS (2013) Transcriptional and metabolic changes associated to the infection by Fusarium verticillioides in maize inbreds with contrasting ear rot resistance. PLoS ONE
Camus-Kulandaivelu, L, Veyrieras, JB, Madur, D, Combes, V, Fourmann, M, Nordborg, M, Bergelson, J, Cuguen, J, and Roux, F (2006) Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene. Genetics
Cockram, J, White, J, Leigh, FJ, Lea, VJ, Chiapparino, E, Laurie, DA, Mackay, IJ, Powell, W and O'Sullivan, DM (2008) Association mapping of partitioning loci in barley. BMC Genetics
D'Andrea, KE, Piedra, CV, Mandolino, CI, Bender, R, Cerri, AM, Cirilo, AG and Otegui, ME (2016) Contribution of reserves to kernel weight and grain yield determination in maize: phenotypic and genotypic variation. Crop Science
Delucchi, C, Eyhérabide, GH, Lorea, RD, Presello, DA, Otegui, ME and López, CG (2012) Classification of argentine maize landraces in heterotic groups. Maydica
Earl, DA and vonHoldt, BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources
Evanno, G, Regnaut, S and Goudet, J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology
Frankel, OH and Brown, AHD (1984) Plant genetic resources today: a critical appraisal. In: Holden, JHW and Williams, JT (eds) Crop Genetic Resources: Conservation and Evaluation. London: Allen and Unwin, pp. 249–257.
Gaut, BS and Long, AD (2003) The lowdown on linkage disequilibrium. Plant Cell
Goodman, MM (1999) Broadening the genetic diversity in maize breeding by use of exotic germplasm. In: Coors, JG and Pandey, S (eds) The Genetics and Exploitation of Heterosis in Crops. Madison, WI, USA: ASA-CSSA-SSSA, 524 p.
Gouesnard, B, Dallard, J, Bertin, P, Boyat, A and Charcosset, A (2005) European maize landraces: genetic diversity, core collection definition and methodology of use. Maydica
Guo, Y, Li, Y, Hong, H and Qiu, Li-Juan (2014) Establishment of the integrated applied core collection and its comparison with mini core collection in soybean (Glycine max). The Crop Journal
Guthrie, WD, Russell, WA, Bing, JW and Dicke, FF (1991) Registration of B96 germplasm line of maize. Crop Science
Hardy, OJ and Vekemans, X (2002) SPAGeDi: a versatile computer program to analyze spatial genetic structure at the individual or population levels. Molecular Ecology Notes
Ishitani, M, Rao, I, Wenzl, P, Beebe, S and Tohme, J (2004) Integration of genomics approach with traditional breeding towards improving abiotic stress adaptation: drought and aluminum toxicity as case studies. Field Crops Research
Jakobsson, M and Rosenberg, NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics
Jiang, H, Huang, L, Ren, X, Chen, Y, Zhou, X, Xia, Y, Huang, J, Lei, Y, Yan, L, Wan, L and Liao, B (2014) Diversity characterization and association analysis of agronomic traits in a Chinese peanut (Arachis hypogaea L.) mini-core collection. Journal of Integrative Plant Biology
Kaga, A, Shimizu, T, Watanabe, S, Tsubokura, Y, Katayose, Y, Harada, K, Vaughan, DA and Tomooka, N (2012) Evaluation of soybean germplasm conserved in NIAS genebank and development of mini core collections. Breeding Science
Li, X, Yan, W, Agrama, H, Hu, B, Jia, L, Jia, M, Jackson, A, Moldenhauer, K, McClung, A and Wu, D (2010) Genotypic and phenotypic characterization of genetic differentiation and diversity in the USDA rice mini-core collection. Genetica
Lia, VV, Poggio, L and Confalonieri, VA (2009) Microsatellite variation in maize landraces from Northwestern Argentina: genetic diversity, population structure and racial affiliations. Theoretical and Applied Genetics
Liu, K and Muse, SV (2005) Powermarker: integrated analysis environment for genetic marker data. Bioinformatics
Liu, K, Goodman, MM, Muse, S, Smith, JSC, Buckler, ES and Doebley, J (2003) Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites. Genetics
Liu, Y, Guo, J, Zhang, D, Zhao, Y, Zhu, L, Huang, Y and Chen, J (2014) Genetic diversity and linkage disequilibrium estimation among the maize breeding germplasm for association mapping. International Journal Of Agriculture & Biology
Loiselle, BA, Sork, VL, Nason, J and Graham, C (1995) Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany
Mandel, JR, Nambeesan, S, Bowers, JE, Marek, LF, Ebert, D, Rieseberg, LH, Knapp, SJ and Burke, JM (2013) Association mapping and the genomic consequences of selection in sunflower. PLoS Genetics
Melchinger, AE and Gumber, RK (1998) Overview of heterosis and heterotic groups in agronomic crops. In: Lamkey, KR and Staub, JE (eds) Concepts and Breeding of Heterosis in Crop Plants. Madison, WI:
CSSA, pp. 29–44.
Mikel, MA and Dudley, JW (2006) Evolution of North American Dent Corn from public to proprietary germplasm. Crop Science
Olmos, SE, Delucchi, C, Ravera, M, Negri, ME, Mandolino, C and Eyhérabide, GH (2014a) Genetic relatedness and population structure within the public Argentine collection of maize inbred lines. Maydica
Olmos, SE, Lorea, R and Eyhérabide, GH (2014b) Genetic variability within accessions of the B73 maize inbred line. Maydica
Oraguzie, NC, Wilcox, PL and Rikkerink, E (2007) Linkage disequilibrium. In: Oraguzie, NC, Rikkerink, EHA, De Silva, HN and Gardiner, SE (eds) Association Mapping in Plants. New York, Springer, pp. 10–39.
Paterniani, E and Goodman, MM (1977) Races of Maize in Brazil and Adjacent Areas. ed. Mexico: Las Américas, 95 p.
Pritchard, JK, Stephens, M and Donnelly, P (2000) Inference of population structure using multilocus genotype data. Genetics
Rafalski, A (2002) Applications of single nucleotide polymorphisms in crop genetics. Current Opinion in Plant Biology
Reif, JC, Hallauer, AR and Melchinger, AE (2005) Heterosis and heterotic patterns in maize. Maydica
Remington, DL, Thornsberry, JM, Matsuoka, Y, Wilson, LM, Whitt, SR, Doebley, J, Kresovich, S, Goodman, MM and Buckler, ES (2001) Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proceedings of the National Academy of Sciences of the United States of America
Rincent, R, Nicolas, S, Bouchet, S, Altmann, T, Brunel, D, Revilla, P, Malvar, RA, Moreno-Gonzalez, J, Campo, L, Melchinger, AE, Schipprack, W, Bauer, E, Schoen, CC, Meyer, N, Ouzunova, M, Dubreuil, P, Giauffret, C, Madur, D, Combes, V, Dumas, F, Bauland, C, Jamin, P, Laborde, J, Flament, P, Moreau, L and Charcosset, A (2014) Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production. Theoretical and Applied Genetics
Roberts, LM, Grant, UJ, Ramirez, ER, Hatheway, WH and Smith, DL (1957) Factors involved in the evolution of maize in Colombia. In: Races of maize in Colombia. Washington, DC: NAS-NRC Publication 510, 153 p. Available at http://www.ars.usda.gov/sp2UserFiles/Place/50301000/Races_of_Maize/RoM_Colombia_0_Book.pdf
Sampietro, DA, Vattuone, MA, Presello, DA, Fauguel, CM and Catalán, CAN (2009) The pericarp and its surface wax layer in maize kernels as resistance factors to fumonisin accumulation by Fusarium verticillioides
. Crop Protection
Schafleitner, R, Nair, RM, Rathore, A, Wang, YW, Lin, CY, Chu, SH, Lin, PY, Chang, JC and Ebert, AW (2015) The AVRDC – the world vegetable center mungbean (Vigna radiata) core and mini core collections. BMC Genomics
Slatkin, M (2008) Linkage disequilibrium – understanding the evolutionary past and mapping the medical future. Nature Reviews Genetics
Stich, B, Melchinger, AE, Frisch, M, Maurer, HP, Heckenberger, M and Reif, JC (2005) Linkage disequilibrium in European elite maize germplasm investigated with SSRs. Theoretical and Applied Genetics
Stich, B, Mohring, J, Piepho, HP, Heckenberger, M, Buckler, ES and Melchinger, AE (2008) Comparison of mixed-model approaches for association mapping. Genetics
Szpiech, ZA, Jakobsson, M and Rosenberg, NA (2008) ADZE: a rarefaction approach for counting alleles private to combinations of populations. Bioinformatics
Upadhyaya, HD, Wang, YH, Gowda, CL and Sharma, S (2013) Association mapping of maturity and plant height using SNP markers with the sorghum mini core collection. Theoretical and Applied Genetics
Van Inghelandt, D, Reif, JC, Dhillon, BS, Flament, P and Melchinger, AE (2011) Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm. Theoretical and Applied Genetics
Wang, R, Yu, Y, Zhao, J, Shi, Y, Song, Y, Wang, T and Li, Y (2008) Population structure and linkage disequilibrium of a mini core set of maize inbred lines in China. Theoretical and Applied Genetics
Wang, ML, Sukumaran, S, Barkley, NA, Chen, Z, Chen, CY, Guo, B, Pittman, RN, Stalker, HT, Holbrook, CC, Pederson, GA and Yu, J (2011) Population structure and marker-trait association analysis of the US peanut (Arachis hypogaea L.) mini-core collection. Theoretical and Applied Genetics
Weir, BS (1996) Genetic data analysis II: Methods for discrete population genetic data, 2nd ed.
Sunderland, Massachusetts: Sinauer Associates, 445 p.
Wen, W, Franco, J, Chavez-Tovar, VH, Yan, J and Taba, S (2012) Genetic characterization of a core set of a tropical maize race tuxpeño for further use in maize improvement. PLoS ONE
Yan, J, Shah, T, Warburton, ML, Buckler, ES, McMullen, MD and Crouch, J (2009) Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS ONE
Yu, J, Pressoir, G, Briggs, WH, Bi, IV, Yamasaki, M, Doebley, JF, McMullen, MD, Gaut, BS, Nielsen, DM, Holland, JB, Kresovich, S and Buckler, ES (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nature Genetics
Yu, J, Holland, JB, McMullen, MD and Buckler, ES (2008) Genetic design and statistical power of nested association mapping in maize. Genetics
Zhang, H, Zhang, D, Wang, M, Sun, J, Qi, Y, Li, J, Wei, X, Han, L, Qiu, Z, Tang, S and Li, Z (2011) A core collection and mini core collection of Oryza sativa L. in China. Theoretical and Applied Genetics
Zhang, Y, Zhang, X, Che, Z, Wang, L, Wei, W and Li, D (2012) Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection. BMC Genetics
Zhu, C, Gore, M, Buckler, ES and Yu, J (2008) Status and prospects of association mapping in plants. The Plant Genome