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46 - Genetic studies*

from Part IX - From field to lab

Published online by Cambridge University Press:  05 September 2015

Michio Nakamura
Affiliation:
Kyoto University, Japan
Kazuhiko Hosaka
Affiliation:
Kamakura Women’s University, Japan
Noriko Itoh
Affiliation:
Kyoto University, Japan
Koichiro Zamma
Affiliation:
Great Ape Research Institute
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Mahale Chimpanzees
50 Years of Research
, pp. 625 - 638
Publisher: Cambridge University Press
Print publication year: 2015

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References

Becquet, C., Patterson, N., Stone, A., Przeworski, M., and Reich, D. (2007). Genetic structure of chimpanzee populations. PLoS Genetics, 3(4), e66.CrossRefGoogle ScholarPubMed
Boesch, C. and Boesch-Achermann, H. (2000). The Chimpanzees of the Taï Forest: Behavioural Ecology and Evolution. Oxford: Oxford University Press.CrossRefGoogle Scholar
Boesch, C., Kohou, G., Nene, H., and Vigilant, L. (2006). Male competition and paternity in wild chimpanzees of Taï Forest. American Journal of Physical Anthropology, 130, 103–15.CrossRefGoogle ScholarPubMed
Constable, J., Ashley, M., Goodall, J., and Pusey, A. (2001). Noninvasive paternity assignment in Gombe chimpanzees. Molecular Ecology, 10, 1279–300.CrossRefGoogle ScholarPubMed
Douadi, M. I., Gatti, S., Levrero, F., et al. (2007). Sex-biased dispersal in western lowland gorillas (Gorilla gorilla gorilla). Molecular Ecology, 16, 2247–59.CrossRefGoogle ScholarPubMed
Eriksson, J., Siedel, H., Lukas, D., et al. (2006). Y-chromosome analysis confirms highly sex-biased dispersal and suggests a low male effective population size in bonobos (Pan paniscus). Molecular Ecology, 15, 939–49.CrossRefGoogle ScholarPubMed
Excoffier, L., Laval, G., and Schneider, S. (2005). Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 4750.Google Scholar
Gagneux, P., Wills, C., Gerloff, U., et al. (1999). Mitochondrial sequences show diverse evolutionary histories of African hominoids. Evolution, 96, 5077–82.Google ScholarPubMed
Garner, T. W., Pearman, P. B., and Angelone, S. (2004). Genetic diversity across a vertebrate species’ range: a test of the central–peripheral hypothesis. Molecular Ecology, 13, 1047–53.CrossRefGoogle Scholar
Goldberg, T. L. and Ruvolo, M. (1997a). The geographic apportionment of mitochondrial genetic diversity in East African chimpanzees, Pan troglodytes schweinfurthii. Molecular Biology and Evolution, 14, 976–84.Google ScholarPubMed
Goldberg, T. L. and Ruvolo, M. (1997b). Molecular phylogenetics and historical biogeography of East African chimpanzees. Biological Journal of the Linnean Society, 61, 301–24.CrossRefGoogle Scholar
Goldberg, T. L. and Wrangham, R.W. (1997). Genetic correlates of social behaviour in wild chimpanzees: evidence from mitochondrial DNA. Animal Behaviour, 54, 559–70.CrossRefGoogle ScholarPubMed
Gonder, M. K., Locatelli, S., Ghobrial, L., et al. (2011). Evidence from Cameroon reveals differences in the genetic structure and histories of chimpanzee populations. Proceedings of the National Academy of Sciences of the USA, 108, 4766–71.CrossRefGoogle ScholarPubMed
Goodall, J. (1983). Population dynamics during a 15 year period in one community of free-living chimpanzees in the Gombe National Park, Tanzania. Zeitschrift für Tierpsychologie, 61, 160.CrossRefGoogle Scholar
Hashimoto, C., Furuichi, T., and Takenaka, O. (1996). Matrilineal kin relationship and social behavior of wild bonobos (Pan paniscus): Sequencing the D-loop region of mitochondrial DNA. Primates, 37, 305–18.CrossRefGoogle Scholar
Hayakawa, S. and Takenaka, O. (1999). Urine as another potential source for template DNA in polymerase chain reaction (PCR). American Journal of Primatology, 48, 299304.3.0.CO;2-G>CrossRefGoogle ScholarPubMed
Hoffmann, A. A. and Blows, M. W. (1994). Species borders: ecological and evolutionary perspectives. Trends in Ecology & Evolution, 9, 223–7.CrossRefGoogle ScholarPubMed
Inoue, E., Inoue-Murayama, M., Nishida, T., Vigilant, L., and Takenaka, O. (2007a). [Paternity analyses in a wild chimpanzee group.] DNA Polymorphism, 15, 54–8. In Japanese.Google Scholar
Inoue, E., Inoue-Murayama, M., Takenaka, O., and Nishida, T. (2007b). Wild chimpanzee infant urine and saliva sampled noninvasively usable for DNA analyses. Primates, 48, 156–9.CrossRefGoogle ScholarPubMed
Inoue, E., Inoue-Murayama, M., Vigilant, L., Takenaka, O., and Nishida, T. (2008a). Relatedness in wild chimpanzees: influence of paternity, male philopatry, and demographic factors. American Journal of Physical Anthropology, 137, 256–62.CrossRefGoogle ScholarPubMed
Inoue, E., Inoue-Murayama, M., Vigilant, L., Takenaka, O., and Nishida, T. (2008b). [Y-STR polymorphism in a wild chimpanzee group.] DNA Polymorphism, 16, 21–4. In Japanese.Google Scholar
Inoue, E., Tashiro, Y., Ogawa, H., et al. (2013). Gene flow and genetic diversity of chimpanzees in Tanzanian habitats. Primate Conservation, 26, 6774.CrossRefGoogle Scholar
Inskipp, T. (2005). Chimpanzee (Pan troglodytes). In: World Atlas of Great Apes and their Conservation, ed. Caldecott, J. and Miles, L.. Berkeley, CA: University of California Press, pp.5381.Google Scholar
Kawamoto, Y., Shotake, T., Nozawa, K., et al. (2007). Postglacial population expansion of Japanese macaques (Macaca fuscata) inferred from mitochondrial DNA phylogeography. Primates, 48, 2740.CrossRefGoogle ScholarPubMed
Kayser, M. and Sajantila, A. (2001). Mutation at Y-STR loci: implications for paternity testing and forensic analysis. Forensic Science International, 118, 116–21.CrossRefGoogle ScholarPubMed
Keele, B. F., Jones, J. H., Terio, K. A., et al. (2009). Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz. Nature, 460, 515–19.CrossRefGoogle ScholarPubMed
Kurihara, R., Yamamoto, T., Uchihi, R., et al. (2004). Mutations in 14 Y-STR loci among Japanese father–son haplotypes. International Journal of Legal Medicine, 118, 125–31.CrossRefGoogle ScholarPubMed
Langergraber, K. E., Mitani, J. C., and Vigilant, L. (2007). The limited impact of kinship on cooperation in wild chimpanzees. Proceedings of the National Academy of Sciences of the USA, 104, 7786–90.CrossRefGoogle ScholarPubMed
Lukas, D., Reynolds, V., Boesch, C., and Vigilant, L. (2005). To what extent does living in a group mean living with kin? Molecular Ecology, 14, 2181–96.CrossRefGoogle Scholar
Morin, P. A., Moore, J. J., Chakraborty, R., et al. (1994). Kin selection, social structure, gene flow, and the evolution of chimpanzees. Science, 265, 1193–201.CrossRefGoogle ScholarPubMed
Morin, P. A., Chambers, K. E., Boesch, C., and Vigilant, L. (2001). Quantitative polymerase chain reaction analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus). Molecular Ecology, 10, 1835–44.CrossRefGoogle ScholarPubMed
Nater, A., Nietlisbach, P., Arora, N., et al. (2011). Sex-biased dispersal and volcanic activities shaped phylogeographic patterns of extant orangutans (genus: Pongo). Molecular Biology and Evolution, 28, 2275–88.CrossRefGoogle ScholarPubMed
Nei, M. (1987). Molecular Evolutionary Genetics. New York: Columbia University Press.CrossRefGoogle Scholar
Nietlisbach, P., Arora, N., Nater, A., et al. (2012). Heavily male-biased long-distance dispersal of orang-utans (genus: Pongo), as revealed by Y-chromosomal and mitochondrial genetic markers. Molecular Ecology, 21, 3173–86.CrossRefGoogle ScholarPubMed
Nishida, T. and Kawanaka, K. (1972). Inter-unit-group relationships among wild chimpanzees of the Mahali Mountains. Kyoto University African Studies, 7, 131–69.Google Scholar
Nishida, T., Hiraiwa-Hasegawa, M., and Hasegawa, T. (1985). Group extinction and female transfer in wild chimpanzees in the Mahale National Park, Tanzania. Zeitschrift für Tierpsychologie, 67, 284301.CrossRefGoogle Scholar
Nishida, T., Takasaki, H., and Takahata, Y. (1990). Demography and reproductive profiles. In The Chimpanzees of the Mahale Mountains, ed. Nishida, T.. Tokyo: University of Tokyo Press. pp. 6397.Google Scholar
Nishida, T., Corp, N., Hamai, M., et al. (2003). Demography, female life history, and reproductive profiles among the chimpanzees of Mahale. American Journal of Primatology, 59, 99121.CrossRefGoogle ScholarPubMed
Nsubuga, A. M., Robbins, M. M., Roeder, A. D., et al. (2004). Factors affecting the amount of genomic DNA extracted from ape faeces and the identification of an improved sample storage method. Molecular Ecology, 13, 2089–94.CrossRefGoogle ScholarPubMed
Oates, J. F., Tutin, C. E. G., Humle, T., et al. (2008). Pan troglodytes. The IUCN Red List of Threatened Species. Version 2013.1. Available at: www.iucnredlist.org. Accessed August 30, 2013.Google Scholar
Piel, A. K., Stewart, F. A., Pintea, L., et al. (2013). The Malagarasi River does not form an absolute barrier to chimpanzee movement in Western Tanzania. PLoS ONE, 8(3), e58965.CrossRefGoogle Scholar
Pusey, A. E. (1979). Intercommunity transfer of chimpanzees in Gombe National Park. In The Great Apes, ed. Hamburg, D. and McCown, E.. Menlo Park, CA: Benjamin/Cummings. pp. 465–79.Google Scholar
Sakamaki, T. and Nakamura, M. (2007). Preliminary survey of unhabituated chimpanzees in the Mahale Mountains National Park, Tanzania: Behavioral diversity across neighboring unit-groups and intergroup relationships. In Formation of a Strategic Base for Biodiversity Studies, The 21st Century COE Program of Kyoto University, pp. 278–80.Google Scholar
Stone, A. C., Battistuzzi, F. U., Kubatko, L. S., et al. (2010). More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure. Philosophical Transactions of the Royal Society B: Biological Sciences, 365, 3277–88.CrossRefGoogle Scholar
Takahata, H. and Takahata, Y. (1989). Inter-group transfer of an immature male of the common chimpanzee and his social interactions in the non-natal group. African Study Monographs, 9, 209–20.Google Scholar
Vigilant, L., Hofreiter, M., Siedel, H., and Boesch, C. (2001). Paternity and relatedness in wild chimpanzee communities. Proceedings of the National Academy of Sciences of the USA, 98, 12890–5.CrossRefGoogle ScholarPubMed
Yoshikawa, M., Ogawa, H., Sakamaki, T., and Idani, G. (2008). Population density of chimpanzees in Tanzania. Pan Africa News, 15, 1720.CrossRefGoogle Scholar

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