Book contents
- Frontmatter
- Contents
- Preface
- Acknowledgments
- Chapter 1 Life Forms and Their Origins
- Chapter 2 Nucleic Acids
- Chapter 3 Proteins
- Chapter 4 Simple Chromosomes
- Chapter 5 Chromosomes of Eukarya
- Chapter 6 Genome Content
- Chapter 7 RNA Synthesis 1: Transcription
- Chapter 8 RNA Synthesis 2: Processing
- Chapter 9 Abundance of RNAs in Bacteria
- Chapter 10 Abundance of RNAs in Eukarya
- Chapter 11 Protein Synthesis
- Chapter 12 DNA Replication
- Chapter 13 Chromosome Replication
- Chapter 14 Molecular Events of Recombination
- Chapter 15 Micromutations
- Chapter 16 Repair of Altered DNA
- Chapter 17 Reproduction of Bacteria
- Chapter 18 Horizontal Gene Transfer in Bacteria
- Chapter 19 Cell Cycles of Eukarya
- Chapter 20 Meiosis
- Chapter 21 Chromosomal Abnormalities
- Chapter 22 Life Cycles of Eukarya
- Chapter 23 Reproduction of Viruses
- Chapter 24 Genetic Processes in Development
- Chapter 25 Sex Determination and Dosage Compensation
- Chapter 26 Cancer
- Chapter 27 Cutting, Sorting, and Copying DNA
- Chapter 28 Genotyping by DNA Analysis
- Chapter 29 Genetically Engineered Organisms
- Chapter 30 Genomics
- Chapter 31 Behavior of Genes and Alleles
- Chapter 32 Probability and Statistics Toolkit
- Chapter 33 Genes, Environment, and Interactions
- Chapter 34 Locating Genes
- Chapter 35 Finding and Detecting Mutations
- Chapter 36 Cytoplasmic Inheritance
- Chapter 37 Genetic Variation in Populations
- Chapter 38 Mutation, Migration, and Genetic Drift
- Chapter 39 Natural Selection
- Chapter 40 Quantitative Genetics
- Chapter 41 Speciation
- Chapter 42 Molecular Evolution and Phylogeny
- Glossary
- Index
Chapter 6 - Genome Content
Published online by Cambridge University Press: 05 June 2012
- Frontmatter
- Contents
- Preface
- Acknowledgments
- Chapter 1 Life Forms and Their Origins
- Chapter 2 Nucleic Acids
- Chapter 3 Proteins
- Chapter 4 Simple Chromosomes
- Chapter 5 Chromosomes of Eukarya
- Chapter 6 Genome Content
- Chapter 7 RNA Synthesis 1: Transcription
- Chapter 8 RNA Synthesis 2: Processing
- Chapter 9 Abundance of RNAs in Bacteria
- Chapter 10 Abundance of RNAs in Eukarya
- Chapter 11 Protein Synthesis
- Chapter 12 DNA Replication
- Chapter 13 Chromosome Replication
- Chapter 14 Molecular Events of Recombination
- Chapter 15 Micromutations
- Chapter 16 Repair of Altered DNA
- Chapter 17 Reproduction of Bacteria
- Chapter 18 Horizontal Gene Transfer in Bacteria
- Chapter 19 Cell Cycles of Eukarya
- Chapter 20 Meiosis
- Chapter 21 Chromosomal Abnormalities
- Chapter 22 Life Cycles of Eukarya
- Chapter 23 Reproduction of Viruses
- Chapter 24 Genetic Processes in Development
- Chapter 25 Sex Determination and Dosage Compensation
- Chapter 26 Cancer
- Chapter 27 Cutting, Sorting, and Copying DNA
- Chapter 28 Genotyping by DNA Analysis
- Chapter 29 Genetically Engineered Organisms
- Chapter 30 Genomics
- Chapter 31 Behavior of Genes and Alleles
- Chapter 32 Probability and Statistics Toolkit
- Chapter 33 Genes, Environment, and Interactions
- Chapter 34 Locating Genes
- Chapter 35 Finding and Detecting Mutations
- Chapter 36 Cytoplasmic Inheritance
- Chapter 37 Genetic Variation in Populations
- Chapter 38 Mutation, Migration, and Genetic Drift
- Chapter 39 Natural Selection
- Chapter 40 Quantitative Genetics
- Chapter 41 Speciation
- Chapter 42 Molecular Evolution and Phylogeny
- Glossary
- Index
Summary
Overview
This chapter inventories classes of DNA sequences in the genomes of organisms, mitochondria, chloroplasts, and viruses.
Part of an organism's genome consists of functional sequences – genes, regulatory sequences, telomeres, centromeres, and origins of replication. However, genomes also include DNA sequences that either are clearly nonfunctional or appear to be nonfunctional. The genomes of bacteria and archaea are mostly free of nonfunctional sequences, but, in many eukaryal genomes, the junkyard is larger than the portion that encodes RNA.
Some genes are present in multiple, identical copies. There are also sets of functionally related, homologous genes, called gene families. Nonfunctional DNA sequences may also be present in multiple copies. Repeated DNA sequences are often arranged in tandem.
What Is a Gene?
Dear reader, I have bad news for you: geneticists cannot agree on what a gene is, even though we do agree that genes are fundamental biological objects. Worse still, gene can change its meaning with context. Though this situation wants a strong remedy, none is available. The best I can offer you is a simple, natural concept of gene, contrasted with widely used, alternative concepts.
Consistently in this book, a gene is defined as a chromosomal segment of nucleic acid that encodes an RNA transcript (a freshly synthesized piece of RNA), along with nearby regulatory sequences needed to initiate RNA synthesis. This applies even when the transcript codes for several peptides or polypeptides.
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- Fundamental Genetics , pp. 43 - 51Publisher: Cambridge University PressPrint publication year: 2004