Spatially resolved transcriptomics (SRT) is a growing field that links gene expression to anatomical context. SRT approaches that use next-generation sequencing (NGS) combine RNA sequencing with histological or fluorescent imaging to generate spatial maps of gene expression in intact tissue sections. These technologies directly couple gene expression measurements with high-resolution histological or immunofluorescent images that contain rich morphological information about the tissue under study. While broad access to NGS-based spatial transcriptomic technology is now commercially available through the Visium platform from the vendor 10× Genomics, computational tools for extracting image-derived metrics for integration with gene expression data remain limited. We developed VistoSeg as a MATLAB pipeline to process, analyze and interactively visualize the high-resolution images generated in the Visium platform. VistoSeg outputs can be easily integrated with accompanying transcriptomic data to facilitate downstream analyses in common programing languages including R and Python. VistoSeg provides user-friendly tools for integrating image-derived metrics from histological and immunofluorescent images with spatially resolved gene expression data. Integration of this data enhances the ability to understand the transcriptional landscape within tissue architecture. VistoSeg is freely available at http://research.libd.org/VistoSeg/.

Reducing severe acute respiratory coronavirus virus 2 (SARS-CoV-2) infections among healthcare workers is critical. We ran Monte Carlo simulations modeling the spread of SARS-CoV-2 in non–COVID-19 wards, and we found that longer nursing shifts and scheduling designs in which teams of nurses and doctors co-rotate no more frequently than every 3 days can lead to fewer infections.

Galaxies undergoing ram pressure stripping in clusters are an excellent opportunity to study the effects of environment on both the AGN and the star formation activity. We report here on the most recent results from the GASP survey. We discuss the AGN-ram pressure stripping connection and some evidence for AGN feedback in stripped galaxies. We then focus on the star formation activity, both in the disks and the tails of these galaxies, and conclude drawing a picture of the relation between multi-phase gas and star formation.

The rare fluophosphate minerals wagnerite, ideally Mg2(PO4)F, and isokite, ideally CaMg(PO4)F, are intimately associated with magnetite-hematite deposits in sillimanite-, garnet-, and pyroxene-rich paragneisses and migmatites at the Benson Mines, near Star Lake in the west-central Adirondack Highlands of New York State. Coarsely crystalline wagnerite occurs in lenticular masses, typically 4 × 8 cm, delineated by sharply cross-cutting, sinuous, 2 cm-wide veins of fine-grained, fibrous to platy isokite and granular fluorapatite. These also penetrate transverse fractures across wagnerite lenses. Isokite formed from the introduction of Ca- and O-rich hydrothermal solutions into wagnerite. Both minerals are monoclinic: wagnerite crystallises in space group P21/a with a = 11.945, b = 12.717, c = 9.70 Å, β = 108.18°, V = 1400.2 Å3, D(calc) = 3.291 g/cm3 for Z = 16; isokite crystallises in space group A2/a with a = 6.909, b = 8.746, c = 6.518 Å, β = 112.20°, V = 364.7 Å3, D(calc) = 3.248 for Z = 4. Optical properties for wagnerite are: α = 1.5845, β = 1.5875, γ = 1.6010, 2V = 51°(calc.) disp = r < v weak, absorption α < β > γ with α = col., β = pale yel., γ = v. pale yel. For isokite only a mean index of refraction, n = 1.598, could be measured. Wet chemical analysis of wagnerite containing a calculated 11.4% of isokite as fine lamellae, gave the formula:

Children with chronic illness often experience difficulties at school, yet little is known about the impact of the child's illness on siblings’ school experiences. This study investigated parents’ perceptions of siblings’ school experiences and school support. We conducted semi-structured telephone interviews with 27 parents of children with a chronic illness who had a sibling or siblings (4–25 years), representing the experiences of 31 siblings. Interviews were audio-recorded, transcribed, and analysed using content analysis. Parents believed that 14 of 31 (45.2%) siblings had school difficulties related to the ill child, such as increased anxiety or stress at school, lack of attention from teachers, and changes in behaviour as a result of increased carer responsibilities. Parents identified increased absenteeism due to the ill child's hospitalisation and the impact of parent absences on sibling school functioning. Parents described general and psychological support from the school, and the importance of monitoring the sibling at school and focusing on their unique needs. Overall, our findings suggest the need for a school-based sibling support model that combines psycho-education for siblings and school personnel, individualised sibling psychological support, and shared school and parent responsibility in normalising the sibling experience and providing consistent support.

This study analyses the epidemiologic, clinical and molecular findings of all culture-confirmed cases of listeriosis notified from 2010 to 2015 in the Tel Aviv District, which is known to have high rates of listeriosis. All clinical isolates of Listeria monocytogenes were subtyped using two-enzyme pulsed-field gel electrophoresis. During the studied period, 102 cases of listeriosis were notified, including 23 pregnancy-associated cases (23%). Among 79 non-pregnancy-associated cases, 18 had neuro-invasive disease (21%). There were 26 deaths associated with the disease. Using molecular identification, we found a number of clusters of identical bacterial clones, which pointed to possible sources of infection. The high rates of morbidity and mortality resulting from listeriosis, as well as the diverse ways of infection demonstrated in this study, accentuate the need to boost public health actions, in order to raise awareness and better control high-risk contamination routes.

Africa is experiencing a rapid increase in adult obesity and associated cardiometabolic diseases (CMDs). The H3Africa AWI-Gen Collaborative Centre was established to examine genomic and environmental factors that influence body composition, body fat distribution and CMD risk, with the aim to provide insights towards effective treatment and intervention strategies. It provides a research platform of over 10 500 participants, 40–60 years old, from Burkina Faso, Ghana, Kenya and South Africa. Following a process that involved community engagement, training of project staff and participant informed consent, participants were administered detailed questionnaires, anthropometric measurements were taken and biospecimens collected. This generated a wealth of demographic, health history, environmental, behavioural and biomarker data. The H3Africa SNP array will be used for genome-wide association studies. AWI-Gen is building capacity to perform large epidemiological, genomic and epigenomic studies across several African counties and strives to become a valuable resource for research collaborations in Africa.

Linked administrative population data were used to estimate the burden of childhood respiratory syncytial virus (RSV) hospitalization in an Australian cohort aged <5 years. RSV-coded hospitalizations data were extracted for all children aged <5 years born in New South Wales (NSW), Australia between 2001 and 2010. Incidence was calculated as the total number of new episodes of RSV hospitalization divided by the child-years at risk. Mean cost per episode of RSV hospitalization was estimated using public hospital cost weights. The cohort comprised of 870 314 children. The population-based incidence/1000 child-years of RSV hospitalization for children aged <5 years was 4·9 with a rate of 25·6 in children aged <3 months. The incidence of RSV hospitalization (per 1000 child-years) was 11·0 for Indigenous children, 81·5 for children with bronchopulmonary dysplasia (BPD), 10·2 for preterm children with gestational age (GA) 32–36 weeks, 27·0 for children with GA 28–31 weeks, 39·0 for children with GA <28 weeks and 6·7 for term children with low birthweight. RSV hospitalization was associated with an average annual cost of more than AUD 9 million in NSW. RSV was associated with a substantial burden of childhood hospitalization specifically in children aged <3 months and in Indigenous children and children born preterm or with BPD.

Thermotropic polymers are thermally treated in air at temperatures Ta, where ΔT =Ta- Ts→n=40°C, and Ts→n is the solid-to-nematic transition. Samples are extruded thin films of a series of thermotropic random copolyesters termed B-N, COTBP and RD1000. The thermal treatment produces a second endotherm without changing Ts→n for B-N and RD1000. However, for COTBP Ts→n is significantly increased. Regardless of the complex thermal behavior exhibited by the thermotropes, the thermal treatment produces a significant increase in Young's modulus, more than 30% for B-N and over 100% for COTBP. The increase in mechanical modulus is correlated with a thermally-induced fiber-like morphology.

Gas in galaxy clusters requires re-heating. We study the re-heating of the cool gas phases. Ionized and molecular gas is traced out to 20 kpc and found to be strongly coupled. The observed line emission may in part be explained by excitation due to hot, young stars.

Far ultraviolet (FUV) emission is observed in the central regions of cool-core clusters with the Hubble Space Telescope (HST). It is traced out to 20 kpc from the nuclei of the brightest cluster galaxies and found to be distributed in clumps and filaments, as shown in Figure 1. The FUV emission matches the global structure of the ionized gas nebulae. If produced by stars, this emission can account for the ionization but not the temperature of the gas (Voit & Donahue 1997; Oonk et al. in preparation).