Few studies have derived data-driven dietary patterns in youth in the USA. This study examined data-driven dietary patterns and their associations with BMI measures in predominantly low-income, racial/ethnic minority US youth. Data were from baseline assessments of the four Childhood Obesity Prevention and Treatment Research (COPTR) Consortium trials: NET-Works (534 2–4-year-olds), GROW (610 3–5-year-olds), GOALS (241 7–11-year-olds) and IMPACT (360 10–13-year-olds). Weight and height were measured. Children/adult proxies completed three 24-h dietary recalls. Dietary patterns were derived for each site from twenty-four food/beverage groups using k-means cluster analysis. Multivariable linear regression models examined associations of dietary patterns with BMI and percentage of the 95th BMI percentile. Healthy (produce and whole grains) and Unhealthy (fried food, savoury snacks and desserts) patterns were found in NET-Works and GROW. GROW additionally had a dairy- and sugar-sweetened beverage-based pattern. GOALS had a similar Healthy pattern and a pattern resembling a traditional Mexican diet. Associations between dietary patterns and BMI were only observed in IMPACT. In IMPACT, youth in the Sandwich (cold cuts, refined grains, cheese and miscellaneous) compared with Mixed (whole grains and desserts) cluster had significantly higher BMI (β = 0·99 (95 % CI 0·01, 1·97)) and percentage of the 95th BMI percentile (β = 4·17 (95 % CI 0·11, 8·24)). Healthy and Unhealthy patterns were the most common dietary patterns in COPTR youth, but diets may differ according to age, race/ethnicity or geographic location. Public health messages focused on healthy dietary substitutions may help youth mimic a dietary pattern associated with lower BMI.

Selection by herbicides has resulted in widespread evolution of herbicide resistance in agricultural weeds. In California, resistance to glyphosate was first confirmed in rigid ryegrass in 1998. Objectives of this study were to determine the current distribution and level of glyphosate resistance in Italian ryegrass, and to assess whether resistance could be due to an altered target site. Seeds were sampled from 118 populations and seedlings were treated with glyphosate at 866 g ae ha−1. Percentage of survivors ranged from 5 to 95% in 54 populations. All plants from 64 populations died. One susceptible (S) population, four putatively resistant (R) populations, and one S accession from Oregon were used for pot dose–response experiments, shikimic acid analyses, and DNA sequencing. Seedlings were treated with glyphosate at eight rates, ranging from 108 to 13,856 g ae ha−1. Shoot biomass was evaluated 3 wk after treatment and fit to a log-logistic regression equation. On the basis of GR50 (herbicide rate required to reduce growth by 50%) values, seedlings from putatively R populations were roughly two to 15 times more resistant to glyphosate than S plants. Shikimic acid accumulation was similar in all plants before glyphosate treatment, but at 4 and 7 DAT, S plants from California and Oregon accumulated approximately two and three times more shikimic acid, respectively, than R plants. Sequencing of a cDNA fragment of the EPSPS coding region revealed two different codons, both of which encode proline at amino acid position 106 in S individuals. In contrast, all R plants sequenced exhibited missense mutations at site 106. Plants from one population revealed a mutation resulting in a proline to serine substitution. Plants from three R populations exhibited a mutation corresponding to replacement of proline with alanine. Our results indicate that glyphosate resistance is widespread in Italian ryegrass populations of California, and that resistance is likely due to an altered target enzyme.

Despite its extreme geographical isolation, numerous expeditions have surveyed the marine flora and fauna of Johnston Atoll. However, historical information about the marine biodiversity of Johnston is mostly limited to SCUBA surveys in shallow-waters (<30 m), and submersible observations in deeper waters (100–500 m). Extensive coral reefs, known as mesophotic coral ecosystems, exist between these two depth ranges at Johnston, but have remained largely unexplored. We used closed-circuit rebreathers to survey eleven sites at mesophotic depths (32–78 m) surrounding Johnston Atoll. A total of 130 species were recorded, including 99 species of fish, 15 species of corals, nine species of macroalgae, three species of echinoderms, three species of sponges and one species of squat lobster. Most species recorded during our mesophotic surveys have previously been recorded on shallow-water (<30 m) reefs at Johnston, with the exception of one black coral, one zoanthid, one squat lobster, two macroalgae, three sponges, and 22 fish, which represent new records for the atoll. As noted in previous studies, our surveys found a near absence of endemism, and recorded high proportions of species that are also known from the Hawaiian Archipelago. The similarity between the mesophotic biodiversity of Johnston Atoll and Hawaiʻi provides further support for the strong connectivity between these two locations highlighted in previous studies.

1. The authors concluded in a previous paper that the most reliable single test for the detection of Bact. coli was incubation in MacConkey's broth at 44° C, such a test for Bact. coli alone being necessary in shellfish because of occasional multiplication of other coliforms in purified mussels. The present investigation is an attempt to verify this finding on a broader basis.

2. A description is given of the isolation of 1600 cultures of coliform organisms from polluted mussels, sewage, and faeces (human, cow, sheep and sea birds). Their classification according to ‘IMViC’ reactions and the production of gas in MacConkey's broth at temperatures of 37, 41, 44, 45 and 46° C. is given.

3. Of the + + − − type, 1036 out of 1065 cultures (97·3%) were found to produce gas in MacConkey's broth at 44° C. A balance is noted between the + + − − type which does not produce gas at 44° C. (irregular I) and the two irregular types which do so (irregular II and irregular VI). Such a balance was reported by Bardsley (1938).

4. From the cultures examined it is confirmed that incubation at 44° C. is the most suitable temperature for use with MacConkey's broth for permitting the maximum number of Bact. coli to produce gas while inhibiting the maximum number of other coliforms.

Section I

A standard bacteriological test for molluscan shellfish should fulfil certain requirements stated: briefly, the test should show the degree of pollution, be accurate and rapid, and self-sufficient, not requiring subsequent confirmation. Review of the subject leads to recommendations, first, to overcome the technical difficulties of preparing samples for testing; secondly, on the nature of the test. In preparation: external shell sterilization can usually be omitted, shell water should be discarded and replaced by sterile water to make a total volume three times that of the body tissues. Pooling of individual shellfish into one sample is acceptable in routine examinations. In the test: a solid medium is preferable to a liquid medium, giving more accurate results, and review of existing tests leads to the conclusion that the use of roll tubes of MacConkey agar incubated at 44° should meet the requirements of a standard test.

Section II

A modification was found necessary in the MacConkey agar: a mixture of 2 % gelatin and 5 % agar is used instead of the normal 2 % agar. Mechanical rolling devices for tubes are described and figured.

Among other critical experiments, 1000 roll-tube colonies grown at 44° from shellfish included 969 with + + − − ‘IMViC’ reactions and 979 acid and gas producers at 44°. The coefficient of variation among replicate tests of samples of shellfish and water in roll tubes was not seriously greater than that for colony counts in Petri dishes at 37° with ordinary MacConkey agar.

Colonies in roll tubes incubated at 44° can be counted as conveniently and accurately as those on Petri dishes, and, in general it is concluded that the new method is more satisfactory for estimation of faecal coli than other methods at present in use.

Section III

Directions are given for the preparation of shellfish and inoculation into roll cultures, both for individual and for pooled examination, and the method of determining results is described.

The interpretation of results is discussed, and it is suggested that shellfish which in four out of five samples from the same source are free from faecal coli in 1 ml. quantities of body tissue should be regarded as satisfactory for food. The presence of more than two or three faecal coli per ml. of body tissue in any one sample calls for appropriate action according to the number present.

When mussels are allowed to function in sea water the main changes occurring in the water are depletion of dissolved oxygen and lowering of pH value. Provided the faeces and pseudo-faeces are not disturbed the increase in the content of organic matter is not appreciable. If the supernatant water is removed and aerated with diffused air the water is re-oxygenated, the pH value is restored to its original level, and the water so treated may be re-used for immersing a fresh batch of mussels. The process of re-use may apparently be continued indefinitely.

Under these conditions a high degree of cleansing is achieved by the mussels, the count of coli-aerogenes bacteria being reduced to a small fraction of the original; counts of bacteria in the water, on the other hand, are subject to large fluctuations. It was considered advisable for this reason to chlorinate the water between each cycle of cleansing in order to immerse the mussels on each occasion in water which itself was reasonably certain to be free from coliform bacteria, potentially including pathogens.

Experience showed that the greatest difficulty involved in the use of chlorine was in removing residual chlorine so that it would not inhibit functioning of the mussels when the water was re-used. After trials of various alternatives it was concluded that the most satisfactory method was to determine by means of small-scale tests the smallest quantity of chlorine (below the break-point) required to give a residual concentration of 0·05–0·10 p.p.m. in the re-used water and then to add the corresponding quantity with precision to the bulk of water by means of a dosing apparatus while the water was being pumped from the mussel tank to the aeration tank. After a period of contact of 1 hr. the water was aerated for a further hour. A series of trials in a semll-scale plant showed that this treatment ensured that residual chlorine in the water being added to the mussels did not exceed 0·05 p.p.m.; as a result the mussels functioned satisfactorily and the degree of cleansing attained was comparable with that attained in the existing mussel-cleansing tanks in which sterilized fresh sea water is used for each cycle of cleansing. Although the concentration of residual chlorine was small the mussels kept the water so clear that this concentration was effectively bactericidal and the bacterial quality of the water was usually comparable with that of good drinking water. Low temperatures retard the metabolic activity of mussels and below 4° C. this is so marked that the degree of cleansing achieved is unsatisfactory. For this reason it is recommended that the temperature of the re-used water should be maintained at 6° C. (43° F.) or above.

Oysters were found to be satisfactorily cleansed by a process of re-use similar to that adopted for mussels, provided the temperature of the water was maintained at 54° F. (12·2° C.) or rather higher.

Small-scale trials showed that artificial sea water, prepared by dissolving in fresh water suitable quantities of the major constituents of natural sea water, could be successfully re-used for cleansing mussels.

1. The use of Esch. coli alone as an index of faecal pollution for shellfish, and the correlation between the 44° C. MacConkey test and citrate tests are discussed.

2. The mercury-toluene thermo-regulator used in these experiments, which gives a maximum variation of ± 0.1° C., is discussed briefly and illustrated.

3. Experiments are described in which 522 colonies from polluted shellfish were isolated, inoculated into MacConkey's broth and incubated at temperatures of 37° C. and at successive 1° intervals from 41 to 46° C., in accurately controlled water-baths. An almost perfect negative correlation was found to exist between 44° C. incubation and the citrate test.

4. It appeared that temperatures above 44° C. are detrimental to the growth of Esch. coli.

5. Certain cultures of citrate-negative lactose fermenters at 37° C., which were inhibited at 44° C., were found on further investigation to be mostly intermediate types.

Recent estimates of total pre-weaning piglet mortality range between 16-19% (MLC 2006). With environmental modification using the farrowing crate reaching its potential to decrease mortality, as well as raising serious welfare concerns, a different approach to effectively address piglet survival is needed. Genetic breeding programmes implemented in alternative farrowing systems could prove a viable option.

The measurement of somatic cell counts (SCC) is used in the UK to detect the presence of sub-clinical mastitis in dairy cattle (Mrode & Swanson, 1996). Many studies have investigated the relationship between farm hygiene and management factors on the herd average SCC (from the bulk milk tank) and have shown that factors such as milking parlour hygiene, the use of straw-yard systems, cleanliness of the lying area and mastitis treatment strategies affect SCC (e.g. Barkema et al., 1999; Peeler et al., 2000). The organic status of the farm may also affect SCC. The principles of livestock farming are that animal health should be promoted through good animal care and management, and this is particularly emphasised for organic systems. Organic standards discourage the general prophylactic use of chemically synthesised allopathic veterinary medicines, such as antibiotics. Use of alternative remedies, such as homeopathy, is encouraged for the treatment of disease. Antibiotics can be used in acute cases, such as for clinical mastitis, but the withdrawal period for sale of milk is longer on organic farms than for non-organic farms. There is concern that these regulations may have a negative impact on animal health and welfare, particularly if alternative health treatments are ineffectual. The aim of this study was to determine whether organic status and other farm management practices affect SCC in organic and non-organic farms.

The current estimate of live-born piglet pre-weaning mortality in UK outdoor systems is 11% (MLC, 2006), representing a major welfare and economic concern. The majority of deaths occur in the first few days of life when the piglets are at their most vulnerable. Selecting for high survival in piglets, may allow breeding of animals better able to survive and better suited to alternative and less restrictive systems than the farrowing crate. The aim was to develop and measure behavioural and physiological indicators of neonatal survival, and to determine treatment effects in populations of piglets selected for high survival and control lines farrowing in an outdoor system.

The health and welfare of organically-farmed livestock are of concern due to restrictions on the use of veterinary medicines. Non-organic systems control nematodes using prophylactic treatment with anthelmintics. Routine drenching is banned within organic agriculture, and farmers are encouraged to find alternative methods of control, for example grazing management practices. This study investigated the level of nematode parasitism in organic and non-organic dairy herds around Scotland.

Pre-weaning piglet mortality is currently 11.8% of piglets born alive in indoor units (MLC, 2005) and is a major welfare concern and a continuing production problem within the pig industry. The farrowing crate was implemented with some success to decrease the amount of crushing of piglets (Edwards & Fraser, 1997). However, this system is restrictive, limits the behaviour and compromises the welfare of the sow (Jarvis et al., 2001). There is growing pressure to abolish this technology in favour of less restrictive systems. It is therefore vital to identify behavioural and physiological characteristics relating to piglet survival, which can then be influential in alternative systems. Important factors in relation to piglet survival include birth weight, birth order, and adequate thermoregulation (Tuchscherer et al. 2001). The aim of this study was to identify additional behavioural and physiological indicators, which could predict piglet survival.

Porous organosilicates useful for on-chip insulator applications can be prepared by templating the vitrification of low molecular weight silsesquioxanes (SSQs) using highly branched, thermally labile macromolecules which are subsequently removed in a thermal process to generate porosity. The process involves spin coating a mixture of the matrix material and the porogen (pore generator) followed by thermal curing to initiate vitrification and decomposition of the porogen. The morphology is fixed during the formation of the nanoscopic inorganicorganic hybrid and is maintained during foaming. This process generates controllable and stable morphologies where the void volume is determined by the porogen loading level. The porous materials are thermally robust and intrinsically hydrophobic without subsequent chemical treatment. Dielectric constants of < 2.2 are easily achieved for pore volumes of only 20%, and this porosity appears to be predominately closed cell in nature. These materials display a number of thermal mechanical and electric properties consistent with the requirements for on-chip insulator applications.

Transparent, nanophase-separated, inorganic-organic hybrid polymers with dielectric constants below 3.0 have been prepared from reactively functionalized poly(amic ester) derivatives and substituted, oligomeric silsesquioxanes. These hybrid materials are stable to 400 °C and above and form tough, crack-free films. Induced cracking and crack propagation studies performed with the application of external stress suggest a maximum critical film thickness of at least 2.0 μm under severe stress conditions. These hybrid materials appear to be significantly toughened by the chemical incorporation of the polyimides relative to organically modified silicates and spin-on-glasses without significantly effecting other important polymer properties of the silicates.