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We report the experimental results of the commissioning phase in the 10 PW laser beamline of the Shanghai Superintense Ultrafast Laser Facility (SULF). The peak power reaches 2.4 PW on target without the last amplifying during the experiment. The laser energy of 72 ± 9 J is directed to a focal spot of approximately 6 μm diameter (full width at half maximum) in 30 fs pulse duration, yielding a focused peak intensity around 2.0 × 1021 W/cm2. The first laser-proton acceleration experiment is performed using plain copper and plastic targets. High-energy proton beams with maximum cut-off energy up to 62.5 MeV are achieved using copper foils at the optimum target thickness of 4 μm via target normal sheath acceleration. For plastic targets of tens of nanometers thick, the proton cut-off energy is approximately 20 MeV, showing ring-like or filamented density distributions. These experimental results reflect the capabilities of the SULF-10 PW beamline, for example, both ultrahigh intensity and relatively good beam contrast. Further optimization for these key parameters is underway, where peak laser intensities of 1022–1023 W/cm2 are anticipated to support various experiments on extreme field physics.
Background: Tumor treatment fields (TTFields) are an approved adjuvant therapy for glioblastoma. The magnitude of applied electrical field is related to the anti-tumoral response. However, peritumoral edema (ptE) may result in shunting of electrical current around the tumor, thereby reducing the intra-tumoral electric field. In this study, we address this issue with computational simulations. Methods: Finite element models were created with varying amounts of ptE surrounding a virtual tumor. The electric field distribution was simulated using the standard TTFields electrode montage. Electric field magnitude was extracted from the tumor and related to edema thickness. Two patient specific models were created to confirm these results. Results: The inclusion of ptE decreased the magnitude of the electric field within the tumor. In the model considering a frontal tumor and an anterior-posterior electrode configuration, ≥ 6 mm of ptE decreased the electric field by 52%. In the patient specific models, ptE decreased the electric field within the tumor by an average of 26%. The effect of ptE on the electric field distribution was spatially heterogenous. Conclusions: Given the importance of electric field magnitude for the anti-tumoral effects of TTFields, the presence of edema should be considered both in future modelling studies and as a predictor of non-response.
A classical result for the simple symmetric random walk with 2n steps is that the number of steps above the origin, the time of the last visit to the origin, and the time of the maximum height all have exactly the same distribution and converge when scaled to the arcsine law. Motivated by applications in genomics, we study the distributions of these statistics for the non-Markovian random walk generated from the ascents and descents of a uniform random permutation and a Mallows(q) permutation and show that they have the same asymptotic distributions as for the simple random walk. We also give an unexpected conjecture, along with numerical evidence and a partial proof in special cases, for the result that the number of steps above the origin by step 2n for the uniform permutation generated walk has exactly the same discrete arcsine distribution as for the simple random walk, even though the other statistics for these walks have very different laws. We also give explicit error bounds to the limit theorems using Stein’s method for the arcsine distribution, as well as functional central limit theorems and a strong embedding of the Mallows(q) permutation which is of independent interest.
The aim of this study was to determine the level of coronavirus disease 2019 (COVID-19) risk perceptions in Indonesia and characterize predictors of perceptions.
Methods:
An online cross-sectional study was conducted. A questionnaire assessed perceived risk and collected independent variables, including sociodemographic data. A multivariable linear regression model was used to characterize the relationship between independent variables and perceived risk.
Results:
We included 1379 respondents in the final analysis with the mean and median of perceived risk score was 19.21% and 10.0%, respectively. Respondents aged between 21 and 30 years had the highest perceived risk, and those who were unmarried had 4.3% higher perceived risk compared with those who were married. Compared with the lowest monthly income group, those making Indonesian Rupiah (IDR) 6-10 million and more than IDR 10 million a month believed they had 4.2% and 8.8% higher risk, respectively. Citizens who lived in cities and health-care workers also had a higher perceived risk compared with those in the rural areas and non–health-care workers, respectively.
Conclusions:
Perceived risk of COVID-19 in Indonesia is relatively low, and this could hamper the adoption of preventive measures of COVID-19. Efforts to increase the awareness and perceived risk are important to prevent the pandemic from escalating.
Poisson-like behavior for event count data is ubiquitous in nature. At the same time, differencing of such counts arises in the course of data processing in a variety of areas of application. As a result, the Skellam distribution – defined as the distribution of the difference of two independent Poisson random variables – is a natural candidate for approximating the difference of Poisson-like event counts. However, in many contexts strict independence, whether between counts or among events within counts, is not a tenable assumption. Here we characterize the accuracy in approximating the difference of Poisson-like counts by a Skellam random variable. Our results fully generalize existing, more limited, results in this direction and, at the same time, our derivations are significantly more concise and elegant. We illustrate the potential impact of these results in the context of problems from network analysis and image processing, where various forms of weak dependence can be expected.
Children with chronic illness often experience difficulties at school, yet little is known about the impact of the child's illness on siblings’ school experiences. This study investigated parents’ perceptions of siblings’ school experiences and school support. We conducted semi-structured telephone interviews with 27 parents of children with a chronic illness who had a sibling or siblings (4–25 years), representing the experiences of 31 siblings. Interviews were audio-recorded, transcribed, and analysed using content analysis. Parents believed that 14 of 31 (45.2%) siblings had school difficulties related to the ill child, such as increased anxiety or stress at school, lack of attention from teachers, and changes in behaviour as a result of increased carer responsibilities. Parents identified increased absenteeism due to the ill child's hospitalisation and the impact of parent absences on sibling school functioning. Parents described general and psychological support from the school, and the importance of monitoring the sibling at school and focusing on their unique needs. Overall, our findings suggest the need for a school-based sibling support model that combines psycho-education for siblings and school personnel, individualised sibling psychological support, and shared school and parent responsibility in normalising the sibling experience and providing consistent support.
Consider a haploid population of fixed finite size with a finite number of allele types and having Cannings exchangeable genealogy with neutral mutation. The stationary distribution of the Markov chain of allele counts in each generation is an important quantity in population genetics but has no tractable description in general. We provide upper bounds on the distributional distance between the Dirichlet distribution and this finite-population stationary distribution for the Wright–Fisher genealogy with general mutation structure and the Cannings exchangeable genealogy with parent independent mutation structure. In the first case, the bound is small if the population is large and the mutations do not depend too much on parent type; 'too much' is naturally quantified by our bound. In the second case, the bound is small if the population is large and the chance of three-mergers in the Cannings genealogy is small relative to the chance of two-mergers; this is the same condition to ensure convergence of the genealogy to Kingman's coalescent. These results follow from a new development of Stein's method for the Dirichlet distribution based on Barbour's generator approach and a probabilistic description of the semigroup of the Wright–Fisher diffusion due to Griffiths and Li (1983) and Tavaré (1984).
Laboratory batch equilibrium studies were conducted to evaluate the sorption-desorption behavior of imazethapyr and its major plant metabolite, 5-hydroxyimazethapyr, in three Minnesota soils. Sorption of both compounds on all soils was low, and pH did not significantly influence sorption in the range of 4,8 to 7.1. Less 5-hydroxyimazethapyr was sorbed than imazethapyr on the same soil. Once sorbed, both compounds were only partially desorbable from all soils. Significant hysteresis and formation of nonextractable residues indicate that the small amount of chemical sorbed is bound to selective surfaces with strong bonds. Webster clay loam had greater irreversibility than Waukegen silt loam and Estherville sandy loam soil. The hysteresis observed in desorption may be responsible for the difference between mobility estimations made from laboratory sorption studies and the limited mobility observed in field experiments.
As a weed, wheat has recently gained greater profile. Determining wheat persistence in cropping systems will facilitate the development of effective volunteer wheat management strategies. In October of 2000, glyphosate-resistant (GR) spring wheat seeds were scattered on plots at eight western Canada sites. From 2001 to 2003, the plots were seeded to a canola–barley–field-pea rotation or a fallow–barley–fallow rotation, with five seeding systems involving seeding dates and soil disturbance levels, and monitored for wheat plant density. Herbicides and tillage (in fallow systems) were used to ensure that no wheat plants produced seed. Seeding systems with greater levels of soil disturbance usually had greater wheat densities. Volunteer wheat densities at 2 (2002) and 3 (2003) yr after seed dispersal were close to zero but still detectable at most locations. At the end of 2003, viable wheat seeds were not detected in the soil seed bank at any location. The majority of wheat seedlings were recruited in the year following seed dispersal (2001) at the in-crop, prespray (PRES) interval. At the PRES interval in 2001, across all locations and treatments, wheat density averaged 2.6 plants m−2. At the preplanting interval (PREP), overall wheat density averaged only 0.2 plants m−2. By restricting density data to include only continuous cropping, low-disturbance direct-seeding (LDS) systems, the latter mean dropped below 0.1 plants m−2. Only at one site were preplanting GR wheat densities sufficient (4.2 plants m−2) to justify a preseeding herbicide treatment in addition to glyphosate in LDS systems. Overall volunteer wheat recruitment at all spring and summer intervals in the continuous cropping rotation in 2001 was 1.7% (3.3 plants m−2). Despite the fact that volunteer wheat has become more common in the central and northern Great Plains, there is little evidence from this study to suggest that its persistence will be a major agronomic problem.
The wake of polygonal cylinders with side number $N=2\sim \infty$ is systematically studied based on fluid force, hot-wire, particle image velocimetry and flow visualisation measurements. Each cylinder is examined for two orientations, with a flat surface or a corner leading and facing normally to the free stream. The Reynolds number $Re$ is $1.0\times 10^{4}\sim 1.0\times 10^{5}$, based on the longitudinally projected cylinder width. The time-averaged drag coefficient $C_{D}$ and fluctuating lift coefficient on these cylinders are documented, along with the characteristic properties including the Strouhal number $St$, flow separation point and angle $\unicode[STIX]{x1D703}_{s}$, wake width and critical Reynolds number $Re_{c}$ at which the transition from laminar to turbulent flow occurs. It is found that once $N$ exceeds 12, $Re_{c}$ depends on the difference between the inner diameter (tangent to the faces) and the outer diameter (connecting corners) of a polygon, the relationship being approximately given by the dependence of $Re_{c}$ on the height of the roughness elements for a circular cylinder. It is further found that $C_{D}$ versus $\unicode[STIX]{x1D709}$ or $St$ versus $\unicode[STIX]{x1D709}$ for all the tested cases collapse onto a single curve, where the angle $\unicode[STIX]{x1D709}$ is the corrected $\unicode[STIX]{x1D703}_{s}$ associated with the laterally widest point of the polygon and the separation point. Finally, the empirical correlation between $C_{D}$ and $St$ is discussed.
Supplementation with n-3 fatty acids may improve long-term outcomes of renal transplant recipients (RTR). Recent evidence suggests that EPA and DHA have different outcomes compared with α-linolenic acid (ALA). We examined the prospective associations of EPA–DHA and ALA intakes with graft failure and all-cause mortality in 637 RTR. During 3·1 years (interquartile range 2·7, 3·8) of follow-up, forty-one developed graft failure and sixty-seven died. In age- and sex-adjusted analyses, EPA–DHA and ALA intakes were not associated with graft failure. EPA–DHA intake was not significantly associated with mortality (hazard ratio (HR) 0·79; 95% CI 0·54, 1·15 per 0·1 energy% difference). ALA intake was significantly associated with mortality (HR 1·17; 95% CI 1·04, 1·31 per 0·1 energy% difference). This association remained following adjustments for BMI, proteinuria and intakes of fat, carbohydrate and protein. RTR in the highest tertile of ALA intake exhibited about 2-fold higher mortality risk (HR 2·21; 95% CI 1·23, 3·97) compared with the lowest tertile. In conclusion, ALA intake may be associated with increased mortality in RTR. Future RCT are needed to confirm these results.
The present work investigates the structure associated with flow past two tandem circular cylinders with a diameter ratio of 0·33. The smaller cylinder is always upstream. The two parameters varied in the present work are the spacing between the cylinders denoted by l/d2where l is the centre to centre spacing and d2 is the diameter of the downstream cylinder, and the Reynolds number Re based on d2 Just like the case of flow past two equal size cylinders, a critical spacing was found to exist. For spacing less than the critical value, shear layers that separate from the upstream cylinder reattach onto the downstream cylinder (reattached flow regime) whereas for spacing larger than the critical value both cylinders shed vortices (co-shedding flow regime). For diameter ratio dl/d2 of 0·33 and at Re ≈ 6·27 × 104, the critical spacing is at l/d2 ≈ 1·8 to 2·2. In 1·8 ≤ l/d2 ≤ 2·2, bi-stable flow situation where the flow structure changes intermittently between the reattached and the co-shedding types was observed and the probability that the flow is co-shedding within the bi-stable regime is found to follow a normal distribution.It was also found that the reattached flow regime can be sub-divided into two sub-regimes. In 0·66 ≤ l/d2 ≤ 1·2 (sub-regime 1), the vortex formation length, lf, of vortices shed by the downstream cylinder appears to be shorter, resulting in larger drag force on the downstream cylinder and larger r.m.s. pressure around it. In 1·4 ≤ l/d2 ≤ 1·18 (subregime 2), lf appears to be larger which results in a smaller drag force and smaller r.m.s. pressure distribution when compared with sub-regime 1. Only the downstream cylinder has a Strouhal number S2 associated with it in the reattached flow regime. The general trend is that of a slight reduction in S2 with increasing l/d2 which is consistent with the relation of larger lf at larger l/d2 in the reattached flow regime. In the coshedding regime, the Strouhal numbers of both cylinders are similar.
The Reynolds number was varied in the range 3·15 × 104 ≤ Re ≤ 8·81 × 104. It was observed that both the mean drag and the r.m.s. lift and drag forces reduce in magnitude when Re was increased. From the spectra of the lift force, reduction in C'L was found to be due to a reduction in the regularity of the vortex shedding process. From the pressure distribution of the downstream cylinder at constant l/d2, it was found that the reduction in mean drag with increasing Re is caused by an increase in base pressure which in turn is likely to be the consequence of an increase in vortex formation length. The upper and lower limits of the range in the lldi at which bistable flow was detected were found to decrease with increasing Re. At l/d2 = 2·0, the flow was of the reattached type at Re = 3·15 × 104 and 4·75 × 104 but became bi-stable at Re ≥ 6·27 × 104.
The objectives of this study were to examine which types of social supports – emotional/informational support, tangible support, affectionate support, and positive interactions – are the predictors of health-related quality of life (HRQoL) in adult patients with CHD and to assess the influence of demographic variables and clinical factors on these variables.
Methods
In total, 205 adult patients with CHD from the National Heart Institute, Malaysia, were recruited. Patients were first screened by cardiology consultants to ensure they fit the inclusion criteria before filling in questionnaires, which were medical outcome studies – social support survey and AQoL-8D.
Results/conclusions
All social supports and their subscales were found to have mild-to-moderate significant relationships with physical dimension, psychological dimension, and overall HRQoL; however, only positive interaction, marital status, and types of diagnosis were reported as predictors of HRQoL. Surprisingly, with regard to the physical dimension of quality of life, social supports were not significant predictors, but educational level, marital status, and types of diagnosis were significant predictors. Positive interaction, affectionate support, marital status, and types of diagnosis were again found to be predictors in the aspects of the psychological dimension of quality of life. In conclusion, positive interaction and affectionate support, which include elements of fun, relaxation, love, and care, should be included in the care of adult patients with CHD.
Inspired by the problem of inferring gene networks associated with the host response to infectious diseases, a new framework for discriminative factor models is developed. Bayesian shrinkage priors are employed to impose (near) sparsity on the factor loadings, while non-parametric techniques are utilized to infer the number of factors needed to represent the data. Two discriminative Bayesian loss functions are investigated, i.e. the logistic log-loss and the max-margin hinge loss. Efficient mean-field variational Bayesian inference and Gibbs sampling are implemented. To address large-scale datasets, an online version of variational Bayes is also developed. Experimental results on two real world microarray-based gene expression datasets show that the proposed framework achieves comparatively superior classification performance, with model interpretation delivered via pathway association analysis.
Background
From a statistical-modeling perspective, gene expression analysis can be roughly divided into two phases: exploration and prediction. In the former, the practitioner attempts to get a general understanding of a dataset by modeling its variability in an interpretable way, such that the inferred model can serve as a feature extractor and hypotheses generating mechanism of the underlying biological processes. Factor models are among the most widely employed techniques for exploratory gene expression analysis [1, 2], with principal component analysis a popular special case [3]. Predictive modeling, on the other hand, is concerned with finding a relationship between gene expression and phenotypes, that can be generalized to unseen samples. Examples of predictive models include classification methods like logistic regression and support vector machines [4, 5].
Factor models infer a latent covariance structure among the genes or biomarkers, with data modeled as generated from a noisy low-rank matrix factorization, manifested in terms of a loadings matrix and a factor scores matrix. Different specifications for these matrices give rise to special cases of factor models, such as principal components analysis [6], nonnegative matrix factorization [7], independent component analysis [8], and sparse factor models [1]. Factor models employing a sparse factor loadings matrix are of significant interest in gene-expression analysis, as the nonzero elements in the loadings matrix may be interpreted as correlated gene networks [1, 2, 9].
Telomere attrition might be one of the mechanisms through which psychosocial stress leads to somatic disease. To date it is unknown if exposure to adverse life events in adulthood is associated with telomere shortening prospectively. In the current study we investigated whether life events are associated with shortening of telomere length (TL).
Method.
Participants were 1094 adults (mean age 53.1, range 33–79 years) from the PREVEND cohort. Data were collected at baseline (T1) and at two follow-up visits after 4 years (T2) and 6 years (T3). Life events were assessed with an adjusted version of the List of Threatening Events (LTE). TL was measured by monochrome multiplex quantitative PCR at T1, T2, and T3. A linear mixed model was used to assess the effect of recent life events on TL prospectively. Multivariable regression analyses were performed to assess whether the lifetime life events score or the score of life events experienced before the age of 12 predicted TL cross-sectionally. All final models were adjusted for age, sex, body mass index, presence of chronic diseases, frequency of sports, smoking status, and level of education.
Results.
Recent life events significantly predicted telomere attrition prospectively (B = −0.031, p = 0.007). We were not able to demonstrate a significant cross-sectional relationship between the lifetime LTE score and TL. Nor did we find exposure to adverse life events before the age of 12 to be associated with TL in adulthood.
Conclusions.
Exposure to recent adverse life events in adulthood is associated with telomere attrition prospectively.
Abnormalities in the corpus callosum have been reported in patients with schizophrenia for over 30 years but the influence of inter-individual differences and illness characteristics remains to be fully elucidated.
Aims
To examine the influence of individual and illness characteristics on the corpus callosum in Chinese Singaporean patients with schizophrenia.
Method
Using magnetic resonance and diffusion tensor imaging, mean corpus callosum area, volume and fractional anisotropy were investigated in 120 Chinese Singaporean patients (52 with chronic and 68 with first-episode schizophrenia) and compared with data from 75 matched healthy controls.
Results
Both area and volume were significantly reduced in patients relative to controls but no significant differences in corpus callosum existed between genders in either patients or controls. Differences in area and volume of the corpus callosum were greatest in patients whose condition was chronic relative to patients with a first episode and controls. Anterior callosum in patients, regardless of chronicity, was no different to that of controls.
Conclusions
Morphological abnormalities in the corpus callosum may increase with illness progression.