The authors describe the history, evolution and actual situation of Estonia's two only remaining autochthonous breeds of farm animal namely the Estonian Native Cattle (577 cows in milk production in 1992) and the Estonian Native Horse (271 purebred horses). This is actually mainly found in the island of Saaremaa, where a nucleus of 211 purebred horses exists. The interest in the Estonian Native Cattle breed is growing since the creation in 1989 of an active Breeders' Association and many farmers applying less intensive production systems and farm management techniques prefer now this breed to the more productive Black and White and Estonian Red cattle. The situation of the Estonian Native Horse is much more fragile, as a clear breeding and conservation programme is needed to save this unique genetic material.