Submerged flexible vegetation occupies the core of aquatic ecosystem research. Hydrodynamics of submerged flexible vegetation and its interaction with the flow in an open channel are of great significance in studying the mass and momentum transports in the flow. In this study, a numerical model for highly flexible vegetation based on large eddy simulation and the immersed boundary method was used to simulate the flow–vegetation interaction. It is recognised that alternate vortices with opposite sense rotations appear at the flow–vegetation interface. These vortices prompt the vegetation canopy to have wave-like coherent waving motion, commonly called the monami phenomena. The spatial scale and the spreading velocity in the streamwise direction of these vortices determine the wavelength, frequency and amplitude of the vegetation coherent waving motion. In this study, the fast Fourier transform method was applied to analyse the factors affecting the characteristics of the vegetation coherent waving motion. It is revealed that, as the flow velocity increases, the wavelength of the coherent waving motion decreases, while the frequency and amplitude increase. Besides, as the vegetation spacing increases, the wavelength and amplitude of the coherent waving motion increase, but the frequency decreases. Furthermore, an increase in the relative density of vegetation magnifies the amplitude of coherent waving motion without affecting the wavelength and frequency.

In this study, we present a three-dimensional numerical model for the interaction of flow with submerged flexible vegetation, based on a large-eddy simulation and the immersed boundary method. The model innovatively realises the interaction between the flow and highly flexible vegetation with clustered leaves. Besides being a three-dimensional model of motion with full degrees of freedom, this study improves the consideration of the motion of the vegetation in all directions, and in addition the energy and momentum transfer in the spanwise direction. Furthermore, we perform a flume experiment for the flow with submerged flexible vegetation, the results of which are used to validate the simulation effects of the numerical model. It is found that the numerical model can effectively simulate the velocity profiles and the movement of vegetation induced by the flow. Using the model to analyse the flow–vegetation interaction, we find that the movement of vegetation is closely related to the flow velocity. As the flow velocity increases, both the offset angle and the vegetation swaying amplitude increase. Compared to vertical rigid vegetation, the tilting of flexible vegetation does not significantly change the velocity difference and the magnitude of the turbulent kinetic energy between the inside and the outside of the vegetation canopy, but it does weaken the disturbance to flow, thus reducing the resistance to flow. However, the swaying of vegetation dose significantly increase the velocity difference between the inside and the outside of the canopy. It forms Kelvin–Helmholtz hairpin vortices intensifying the turbulence production, and enhancing the disturbance and resistance to flow.

In this article a comparison study of the numerical methods for compressible two-phase flows is presented. Although many numerical methods have been developed in recent years to deal with the jump conditions at the fluid-fluid interfaces in compressible multiphase flows, there is a lack of a detailed comparison of these methods. With this regard, the transport five equation model, the modified ghost fluid method and the cut-cell method are investigated here as the typical methods in this field. A variety of numerical experiments are conducted to examine their performance in simulating inviscid compressible two-phase flows. Numerical experiments include Richtmyer-Meshkov instability, interaction between a shock and a rectangle SF6 bubble, Rayleigh collapse of a cylindrical gas bubble in water and shock-induced bubble collapse, involving fluids with small or large density difference. Based on the numerical results, the performance of the method is assessed by the convergence order of the method with respect to interface position, mass conservation, interface resolution and computational efficiency.

Morphogenesis and identification of embryonic differentiation in porcine embryos are crucial issues for developmental biology and laboratory animal science. The current paper presents a study on the asynchronous development of hatched porcine embryos from days 7 to 13 post-insemination. Examination of semi-thin sections of the hypoblast showed that it had characteristics similar to those of the mouse anterior visceral endoderm during embryonic disc formation. Also, a cavity appeared in the epiblast, which was similar to a mouse proamniotic cavity. With the gradual disappearance of Rauber's layer, the cavity opened and contacted the external environment directly, all of which formed the embryonic disc. To confirm the differentiation characteristics, we performed immunohistochemical analyses and showed that GATA6 was detected clearly in parietal endoderm cells during embryonic disc establishment. OCT4 was expressed in the inner cell mass (ICM) and trophoblast of hatched blastocysts and in the epiblast during formation of the embryonic disc. However, OCT4 showed comparatively decreased expression in the posterior embryonic disc, primitive streak and migrating cells. SOX2 was present in the ICM and epiblast. Therefore, both SOX2 and OCT4 can be used as markers of pluripotent cells in the porcine embryonic disc. At the start of gastrulation, staining revealed VIMENTIN in the posterior of the embryonic disc, primitive streak and in migrating cells that underlay the embryonic disc and was also expressed in epiblast cells located in the anterior primitive streak. Together with serial sections of embryos stained by whole mount immunohistochemistry, the mesoderm differentiation pattern was shown as an ingression movement that took place at the posterior of the embryonic disc and with bilateral migration along the embryonic disc borders.

In low-cost self-contained pedestrian navigation systems, traditional Pedestrian Dead Reckoning (PDR) solutions utilize accelerometers to derive the speed as well as the distance travelled, and obtain the walking heading from magnetic compasses or gyros. However, these measurements are sensitive to instrument errors and disturbances from ambient environment. To be totally different from these signals in nature, the electromyography (EMG) signal is a typical kind of biomedical signal that measures electrical potentials generated by muscle contractions from the human body. This kind of signal would reflect muscle activities during human locomotion, so that it can not only be used for speed estimation, but also disclose the azimuth information from the contractions of lumbar muscles when changing the direction of walking. Therefore, investigating how to utilize the EMG signal for PDR is interesting and promising. In this paper, a novel EMG-based speed estimation method is presented, including setup of the EMG equipment, pre-processing procedure, stride detection and stride length estimation. Furthermore, this method suggested is compared with the traditional one based on accelerometers by means of several field tests. The results demonstrate that the EMG-based method is effective and its performance in PDR can be comparable to that of the accelerometer-based method.

Molecular dynamic simulations of helium atoms escaping from a helium-filled nanobubble near the surface of crystalline palladium reveal unexpected behavior. Significant deformation and cracking near the helium bubble occur initially, and then a channel forms between the bubble and the surface, providing a pathway for helium atoms to propagate toward the surface. The helium atoms erupt from the bubble in an instantaneous and volcano-like process, which leads to surface deformation consisting of cavity formation on the surface, along with modification and atomic rearrangement at the periphery of the cavity. The present simulation results show that, near the palladium surface, there is a helium-bubble-free zone, or denuded zone, with a typical thickness of about 3.0 nm. Combined with experimental measurements and continuum-scale evolutionary model predictions, the present atomic simulations demonstrate that the thickness of the denuded zone, which contains a low concentration of helium atoms, is somewhat larger than the diameter of the helium bubbles in the metal tritide. Furthermore, a relationship between the tensile strength and thickness of metal film is also determined.

Extended abstract of a paper presented at Microscopy and Microanalysis 2004 in Savannah, Georgia, USA, August 1–5, 2004.