We investigated the ecology and paleoecology of testate amoebae in peatlands of the Colombian páramo to assess the use of testate amoebae as paleoenvironmental indicators. Objectives were to (1) identify environmental controls on testate amoebae, (2) develop transfer functions for paleoenvironmental inference, and (3) examine testate amoebae in a Holocene peat core and compare our findings with other proxy records. Results from 96 modern samples indicate that testate amoebae are sensitive to pH and surface moisture, and cross-validation of transfer functions indicates potential for paleoenvironmental applications. Testate amoebae from the Triunfo Peatland in the Central Cordillera provided a proxy record of pH and water-table depth for the late Holocene, and inferred changes were correlated with peat C/N measurements during most of the record. Comparison with a lake-level reconstruction suggests that at least the major testate amoeba–inferred changes were driven by climate. Our work indicates that testate amoebae are useful paleoenvironmental indicators in high-elevation tropical peatlands.

Palynological studies document forest disappearance during the late Holocene in the tropical Maya lowlands of northern Guatemala. The question remains as to whether this vegetation change was driven exclusively by anthropogenic deforestation, as previously suggested, or whether it was partly attributable to climate changes. We report multiple palaeoclimate and palaeoenvironment proxies (pollen, geochemical, sedimentological) from sediment cores collected in Lake Petén Itzá, northern Guatemala. Our data indicate that the earliest phase of late Holocene tropical forest reduction in this area started at ∼ 4500 cal yr BP, simultaneous with the onset of a circum-Caribbean drying trend that lasted for ∼ 1500 yr. This forest decline preceded the appearance of anthropogenically associated Zea mays pollen. We conclude that vegetation changes in Petén during the period from ∼ 4500 to ∼ 3000 cal yr BP were largely a consequence of dry climate conditions. Furthermore, palaeoclimate data from low latitudes in North Africa point to teleconnective linkages of this drying trend on both sides of the Atlantic Ocean.

Pleistocene and Holocene vegetation dynamics in the American tropics are inferred largely from pollen in continental lake sediments. Maritime influences may have moderated climate and vegetation changes on Caribbean islands. Stable isotope (δ18O) study of a 7.6-m core from Lake Miragoane, Haiti, provided a high-resolution record of changing evaporation/precipitation (E/P) since ∼10,300 14C yr B.P. The Miragoane pollen record documents climate influences and human impacts on vegetation in Hispaniola. The δ18O and pollen data near the base of the core indicate cool, dry conditions before ∼10,000 14C yr B.P. Lake Miragoane filled with water in the early Holocene as E/P declined and the freshwater aquifer rose. Despite increasing early Holocene moisture, shrubby, xeric vegetation persisted. Forest expanded ∼7000 14C yr B.P. in response to greater effective moisture and warming. The middle Holocene (∼7000–3200 14C yr B.P.) was characterized by high lake levels and greatest relative abundance of pollen from moist forest taxa. Climatic drying that began ∼3200 14C yr B.P. may have driven some mesophilic animal species to extinction. The pollen record of the last millennium reflects pre-Columbian (Taino) and European deforestation. Long-term, Holocene vegetation trends in southern Haiti are comparable to trends from continental, lowland circum-Caribbean sites, suggesting a common response to regional climate change.

Climate variability on the Yucatan Peninsula during the past 3500 yrs is reconstructed from the measurement of δ18O in monospecific ostracods and gastropods in a 6.3-m sediment core from Lake Punta Laguna, Mexico. This late Holocene record is divided into three periods based on changes in mean δ18O values. From ∼3310 to ∼1785 14C yr B.P. (Period I), low mean δ18O values indicate relatively wet conditions (i.e., low evaporation to precipitation ratio, E/P). Mean oxygen isotopic values increased ∼1785 14C yr B.P., and the interval between ∼1785 and ∼930 14C yr B.P. (Period II) was distinctly drier than the periods before or after. The climate during the latter part of Period II was persistently dry, with exceptionally arid events centered at ∼1171, 1019, and 943 14C yr B.P. (equivalent to 862, 986, and 1051 A.D.). This interval of frequent drought was recorded at several other localities in Mexico and Central America, and coincided with the collapse of Classic Maya civilization. Following the last arid event, δ18O values decreased abruptly at ∼930 14C yr B.P. (beginning of Period III), signaling a return to wetter conditions that have generally prevailed to the present, with the exception of a dry episode centered at 559 14C yr B.P. (1391 A.D.). The paleoclimatic record from Punta Laguna provides evidence that multi-decadal and millennial-scale changes in E/Poccurred on the Yucatan Peninsula during the late Holocene. These wet/dry episodes may have influenced cultural evolution in Mesoamerica.

A 4000-yr sediment core record from Lake Salpetén, Guatemala, provides evidence for Maya-induced forest clearance and consequent soil erosion between ∼1700 cal yr B.C. and 850 cal yr A.D. Radiocarbon ages of wood, seeds, and charcoal support an age-depth model with average errors of ±110 cal yr. Relatively low carbonate δ18O values between 1300 and 400 cal yr B.C. coincide with pollen evidence for forest loss, consistent with increased surface and groundwater flow to the lake. Minimum δ18O values between 400 cal yr B.C. and 150 cal yr A.D. suggest a high lake level, as do 14C-dated aquatic gastropods as much as 7.5 m above the present lake stage. High lake levels resulted from reduced evaporation-to-precipitation ratios, increased hydrologic input caused by anthropogenic deforestation, or both. The Preclassic abandonment (150 A.D.) and Early Classic/Late Classic boundary (550 A.D.) are marked by relatively high δ18O values indicating reduced lake levels. Oxygen isotope composition increased further coincident with the Terminal Classic Maya demographic decline between 800 and 900 A.D. This period of high δ18O may have been caused by the greater aridity that has been documented in northern Yucatán lakes or by decreased hydrologic input to the lake as a consequence of forest recovery. Reduced soil erosion after 850 cal yr A.D. coincided with the Terminal Classic Maya demographic decline and permitted forest recovery and resumption of organic sedimentation.

Pollen, charcoal, magnetic susceptibility, and bulk density data provide the first paleoecological record spanning the last 33,000 years from the western cordillera of the Peruvian Andes. Sparse super-puna vegetation existed before 30,000 cal yr B.P. around Lake Compuerta (3950 m elevation), prior to a sedimentary hiatus that lasted until c. 16,200 cal yr B.P. When sedimentation resumed, a glacial foreland or super-puna flora is represented in which Polylepis was a significant element. Glacial outwash, marked by high sedimentary magnetic susceptibility, increased from c.16,200 cal yr B.P. and reached a peak at c. 13,200 cal yr B.P. Between c. 12,500 cal yr B.P. and 10,000 cal yr B.P., magnetic susceptibility was reduced. Vegetation shifts suggest a cool dry time, consistent with regional descriptions of the Younger Dryas event. Deglaciation resumes by 10,000 cal yr B.P. and the last ice is lost from the catchment at ∼7500 cal yr B.P. During the early Holocene warm and dry period between 10,000 and 5500 cal yr B.P., Alnus expanded in downslope forests. Alnus declined in abundance at 5500 cal yr B.P. when wetter and cooler conditions returned and human activity intensified. Maize (Zea mays) pollen first occurred in the core at ∼2600 cal yr B.P., indicating a minimum age for local agriculture. An increase in Alnus pollen abundance at ∼1000 cal yr B.P. could be due to human activity or perhaps due to a regional climate change associated with cultural turnover elsewhere in the Andes at this time.

Long sediment cores (12.5 and 13.5 m) from two lakes in Yunnan Province were used to infer the paleoclimate of southwest China over the past 50,000 yr. During the Holocene and marine isotope stage (MIS 3), bio-induced carbonate precipitation and organic matter (OM) production was high, suggesting warm temperatures and high primary productivity. In contrast, sediment inorganic carbon (IC) and organic carbon (OC) concentrations were low in last glacial deposits from 38,000 to 12,000 cal yr B.P., indicating cool temperatures and low productivity. The 50,000-yr record has alternating peaks of carbonate and coarse-grain (>38 μm) quartz that reflect warm, moist interglacial or interstadial conditions alternating with cold, dry glacial or stadial conditions, respectively. Spectral analysis of the carbonate and quartz signals reveals power concentrated at periods of 7200 and 8900 cal yr, respectively, that may reflect a nonlinear climate response to precessional forcing at a time of reduced eccentricity modulation (McIntyre and Molfino, 1996). Oxygen isotope values of calcite from Yunnan lake cores indicate the summer monsoon was weak during the last glaciation from 50,000 to 12,000 cal yr B.P. The summer monsoon intensified between 12,000 and 8000 cal yr B.P., but weakened gradually in response to insolation forcing during the mid-to-late Holocene. Our results support the Overpeck et al. (1996) model that posits a weak summer monsoon during the last glaciation that responded nonlinearly to insolation forcing when its intensity was affected by Eurasian snow cover and ice-sheet extent. The summer monsoon intensified and responded linearly to seasonal insolation forcing in the Holocene when ice volume diminished.

Paleolimnological and archaeological records that span 3500 years from Lake Titicaca and the surrounding Bolivian–Peruvian altiplano demonstrate that the emergence of agriculture (ca. 1500 B.C.) and the collapse of the Tiwanaku civilization (ca. A.D. 1100) coincided with periods of abrupt, profound climate change. The timing and magnitude of climate changes are inferred from stratigraphic evidence of lake-level variation recorded in14C-dated lake-sediment cores. Paleo-lake levels provide estimates of drainage basin water balance. Archaeological evidence establishes spatial and temporal patterns of agricultural field use and abandonment. Prior to 1500 B.C., aridity in the altiplano precluded intensive agriculture. During a wetter period from 1500 B.C. to A.D. 1100, the Tiwanaku civilization and its immediate predecessors developed specialized agricultural methods that stimulated population growth and sustained large human settlements. A prolonged drier period (ca. A.D. 1100–1400) caused declining agricultural production, field abandonment, and cultural collapse.

We studied a 5.1-m sediment core from Aguada X'caamal (20° 36.6′N, 89° 42.9′W), a small sinkhole lake in northwest Yucatan, Mexico. Between 1400 and 1500 A.D., oxygen isotope ratios of ostracod and gastropod carbonate increased by an average of 2.2‰ and the benthic foraminifer Ammonia beccarii parkinsoniana appeared in the sediment profile, indicating a hydrologic change that included increased lake water salinity. Pollen from a core in nearby Cenote San José Chulchacá showed a decrease in mesic forest taxa during the same period. Oxygen isotopes of shell carbonate in sediment cores from Lakes Chichancanab (19° 53.0′N, 88° 46.0′W) and Salpeten (16° 58.6′N, 89° 40.5′W) to the south also increased in the mid-15th century, but less so than in Aguada X'caamal. Climate change in the 15th century is also supported by historical accounts of cold and famine described in Maya and Aztec chronicles. We conclude that climate became drier on the Yucatan Peninsula in the 15th century A.D. near the onset of the Little Ice Age (LIA). Comparison of results from the Yucatan Peninsula with other circum-Caribbean paleoclimate records indicates a coherent climate response for this region at the beginning of the LIA. At that time, sea surface temperatures cooled and aridity in the circum-Caribbean region increased.

Field experiments were conducted in Chile and western Canada to measure short-distance (0 to 100 m) outcrossing from transgenic safflower (Carthamus tinctorius L.) intended for plant molecular farming to non-transgenic commodity safflower of the same variety. The transgenic safflower used as the pollen source was transformed with a construct for seed-specific expression of a high-value protein and constitutive expression of a gene conferring resistance to the broad-spectrum herbicide glufosinate. Progeny of non-transgenic plants grown in plots adjacent to the transgenic pollen source were screened for glufosinate resistance to measure outcrossing frequency. Outcrossing frequency differed among locations: values closest to the transgenic pollen source (0 to 3 m) ranged from 0.48 to 1.67% and rapidly declined to between 0.0024 to 0.03% at distances of 50 to 100 m. At each location, outcrossing frequency was spatially heterogeneous, indicating insects or wind moved pollen asymmetrically. A power analysis assuming a binomial distribution and a range of alpha values (type 1 error) was conducted to estimate an upper and lower confidence interval for the probable transgenic seed frequency in each sample. This facilitated interpretation when large numbers of seeds were screened from the outcrossing experiments and no transgenic seeds were found. This study should aid regulators and the plant molecular farming industry in developing confinement strategies to mitigate pollen mediated gene flow from transgenic to non-transgenic safflower.

Since the late 1950s, scientists have used sediment cores from lakes on the Yucatan Peninsula to explore the complex interactions among climate, environment, and ancient Maya culture. Early paleolimnological studies generally assumed that late Holocene climate was invariable. Consequently, paleolimnologically inferred environmental changes that occurred during the past 3,000 years or so—for example, forest decline and soil erosion—were attributed wholly to anthropogenic activities such as land clearance for agriculture and construction. Recent high-resolution, proxy-based paleoclimate records from continental and insular sites around the Caribbean Sea contradict the assumption of late Holocene climate stability. Instead, these core data suggest that regional drying began about 3,000 years ago and that the past three millennia were characterized by variable moisture availability. Paleoclimate inferences from Lakes Chichancanab and Punta Laguna, northern Yucatan Peninsula, indicate that drought events over the past 2,600 years were cyclical. These dry events, thought to have been driven by solar forcing, appear to have occurred approximately every two centuries (about 208 years). The driest period of the late Holocene occurred between A.D. 800 and 1000, coincident with the Classic Maya Collapse. We review the history of paleolimnological studies in the Maya Lowlands, discuss the difficulty of differentiating climatic signals from anthropogenic signals in late Holocene lake sediment profiles, and assess current understanding of past climate changes in the region based on regional lacustrine sediment studies.