Specially trained detection dogs have been used to locate faeces (scats) for faecal analyses but their effectiveness has not been quantified. We evaluated detection and accuracy rates of dogs trained to find scats of endangered San Joaquin kit foxes (Vulpes macrotis mutica). Four dogs found from 0.43 to 5.37 presumptive kit fox scats per km of transect searched in two field sites where kit foxes and coyotes (Canis latrans) but not non-native red foxes (V. vulpes) were present. The unusually low detection rate (0.43 scats per km) by one dog (probably due to excessive panting in hot weather) was still similar to the average scat detection rate of two experienced humans. DNA tests of 1298 scats showed that all dogs were 100% accurate at distinguishing kit fox scats under our field conditions. Because red foxes are sympatric with kit foxes in some areas, we also conducted controlled discrimination experiments to see if trained dogs could distinguish between scats from kit and red foxes. Four dogs were 100% accurate at choosing a kit fox scat when red fox scats were present (n = 64 trials), but were less accurate at ignoring red fox scats in trials where a kit fox scat was absent.