SNP in the vitamin D receptor (VDR) gene is associated with risk of lower respiratory infections. The influence of genetic variation in the vitamin D pathway resulting in susceptibility to upper respiratory infections (URI) has not been investigated. We evaluated the influence of thirty-three SNP in eleven vitamin D pathway genes (DBP, DHCR7, RXRA, CYP2R1, CYP27B1, CYP24A1, CYP3A4, CYP27A1, LRP2, CUBN and VDR) resulting in URI risk in 725 adults in London, UK, using an additive model with adjustment for potential confounders and correction for multiple comparisons. Significant associations in this cohort were investigated in a validation cohort of 737 children in Manchester, UK. In all, three SNP in VDR (rs4334089, rs11568820 and rs7970314) and one SNP in CYP3A4 (rs2740574) were associated with risk of URI in the discovery cohort after adjusting for potential confounders and correcting for multiple comparisons (adjusted incidence rate ratio per additional minor allele ≥1·15, Pfor trend ≤0·030). This association was replicated for rs4334089 in the validation cohort (Pfor trend=0·048) but not for rs11568820, rs7970314 or rs2740574. Carriage of the minor allele of the rs4334089 SNP in VDR was associated with increased susceptibility to URI in children and adult cohorts in the United Kingdom.

Desiccation following prolonged air exposure challenges survival of aquatic plants during droughts, water drawdowns, and overland dispersal. To improve predictions of plant response to air exposure, we observed the viability of vegetative fragments of 10 aquatic plant species (Cabomba caroliniana, Ceratophyllum demersum, Elodea canadensis, Egeria densa, Myriophyllum aquaticum, Myriophyllum heterophyllum, Myriophyllum spicatum, Potamogeton crispus, Potamogeton richardsonii, and Hydrilla verticillata) following desiccation. We recorded mass loss, desiccation rate, and plant fragment survival across a range of air exposures. Mass loss accurately predicted viability of aquatic plant fragments upon reintroduction to water. However, similar periods of air exposure differentially affected viability between species. Understanding viability following desiccation can contribute to predicting dispersal, improving eradication protocols, and disposing of aquatic plants following removal from invaded lakes or contaminated equipment.

Radio survey datasets comprise an increasing number of individual observations stored as sets of multidimensional data. In large survey projects, astronomers commonly face limitations regarding: 1) interactive visual analytics of sufficiently large subsets of data; 2) synchronous and asynchronous collaboration; and 3) documentation of the discovery workflow. To support collaborative data inquiry, we present encube, a large-scale comparative visual analytics framework. encube can utilise advanced visualization environments such as the CAVE2 (a hybrid 2D and 3D virtual reality environment powered with a 100 Tflop/s GPU-based supercomputer and 84 million pixels) for collaborative analysis of large subsets of data from radio surveys. It can also run on standard desktops, providing a capable visual analytics experience across the display ecology. encube is composed of four primary units enabling compute-intensive processing, advanced visualisation, dynamic interaction, parallel data query, along with data management. Its modularity will make it simple to incorporate astronomical analysis packages and Virtual Observatory capabilities developed within our community. We discuss how encube builds a bridge between high-end display systems (such as CAVE2) and the classical desktop, preserving all traces of the work completed on either platform – allowing the research process to continue wherever you are.

A complete copy of the compressed COSMOS/UKST Southern Sky Object Catalogue is now available on-line at the Anglo-Australian Observatory and the Australia Telescope National Facility. The catalogue lists image parameters for all objects detected to a limit of BJ ≈ 21·5 in the UK Schmidt Southern Sky Survey. We have written software to access the catalogue efficiently and generate finding charts or text listings of the image parameters. In this paper we describe the software and give some examples of its use. We also discuss the astrometric precision of the catalogue.

Background: Engaging clients from the outset of psychotherapy is important for therapeutic success. However, there is little research evaluating therapists’ initial attempts to engage clients in the therapeutic process. This article reports retrospective analysis of data from a trial of online cognitive behavioural therapy (CBT) for depression. Qualitative and quantitative methods were used to evaluate how therapists manage clients’ expectations at the outset of therapy and its relationship with client retention in the therapeutic intervention. Aims: To develop a system to codify expectation management in initial sessions of online CBT and evaluate its relationship with retention. Method: Initial qualitative research using conversation analysis identified three communication practices used by therapists at the start of first sessions: no expectation management, some expectation management, and comprehensive expectation management. These findings were developed into a coding scheme that enabled substantial inter-rater agreement (weighted Kappa = 0.78; 95% CI: 0.52 to 0.94) and was applied to all trial data. Results: Adjusting for a range of client variables, primary analysis of data from 147 clients found comprehensive expectation management was associated with clients remaining in therapy for 1.4 sessions longer than those who received no expectation management (95% CI: -0.2 to 3.0). This finding was supported by a sensitivity analysis including an additional 21 clients (1.6 sessions, 95% CI: 0.2 to 3.1). Conclusions: Using a combination of qualitative and quantitative methods, this study suggests a relationship between expectation management and client retention in online CBT for depression, which has implications for professional practice. A larger prospective study would enable a more precise estimate of retention.

Archival data from the HI Parkes All-Sky Survey (HIPASS) and the HI Zone of Avoidance (HIZOA) survey have been carefully reprocessed into a new 1.4 GHz continuum map of the sky south of δ = +25°. The wide sky coverage, high sensitivity of 40 mK (limited by confusion), resolution of 14.4 arcmin (compared to 51 arcmin for the Haslam et al. 408 MHz and 35 arcmin for the Reich et al. 1.4 GHz surveys), and low level of artefacts make this map ideal for numerous studies, including: merging into interferometer maps to complete large-scale structures; decomposition of thermal and non-thermal emission components from Galactic and extragalactic sources; and comparison of emission regions with other frequencies. The new map is available for download.

Significant new opportunities for astrophysics and cosmology have been identified at low radio frequencies. The Murchison Widefield Array is the first telescope in the southern hemisphere designed specifically to explore the low-frequency astronomical sky between 80 and 300 MHz with arcminute angular resolution and high survey efficiency. The telescope will enable new advances along four key science themes, including searching for redshifted 21-cm emission from the EoR in the early Universe; Galactic and extragalactic all-sky southern hemisphere surveys; time-domain astrophysics; and solar, heliospheric, and ionospheric science and space weather. The Murchison Widefield Array is located in Western Australia at the site of the planned Square Kilometre Array (SKA) low-band telescope and is the only low-frequency SKA precursor facility. In this paper, we review the performance properties of the Murchison Widefield Array and describe its primary scientific objectives.

A complete ring of neutral hydrogen gas (HI) in the LGG 138 group of galaxies has been found. The HI mass of the ring is greater than 109, and the gas appears to be rotating with a projected circular speed of ∼200 km s−1. Two bright galaxies are enclosed by the ring, both having radial velocities consistent with membership of the group. Faint stellar emission extends to the radial distance of the HI ring, where a small but distinct colour discontinuity of between 0·05 and 0·20 magnitudes is detected. Three simple models for the formation of the system are briefly described, the most likely appearing to be a past gas-sweeping collision between one of the two bright galaxies and an outside intruder, with the colour break being partly due to an expanding density wave that is triggering star formation, and partly to a different stellar population that has been collected from the outskirts of the intruder.

We describe the first distributed data implementation of the perspective shear-warp volume rendering algorithm and explore its applications to large astronomical data cubes and simulation realisations. Our system distributes sub-volumes of 3-dimensional images to leaf nodes of a Beowulf-class cluster, where the rendering takes place. Junction nodes composite the sub-volume renderings together and pass the combined images upwards for further compositing or display. We demonstrate that our system out-performs other software solutions and can render a 'worst-case' 512 × 512 × 512 data volume in less than four seconds using 16 rendering and 15 compositing nodes. Our system also performs very well compared with much more expensive hardware systems. With appropriate commodity hardware, such as Swinburne's Virtual Reality Theatre or a 3Dlabs Wildcat graphics card, stereoscopic display is possible.

We present a new, three-dimensional (3D) plotting library with advanced features, and support for standard and enhanced display devices. The library — s2plot — is written in c and can be used by c, c++, and fortran programs on GNU/Linux and Apple/OSX systems. s2plot draws objects in a 3D (x,y,z) Cartesian space and the user interactively controls how this space is rendered at run time. With a pgplot-inspired interface, s2plot provides astronomers with elegant techniques for displaying and exploring 3D data sets directly from their program code, and the potential to use stereoscopic and dome display devices. The s2plot architecture supports dynamic geometry and can be used to plot time-evolving data sets, such as might be produced by simulation codes. In this paper, we introduce s2plot to the astronomical community, describe its potential applications, and present some example uses of the library.

General-purpose computing on graphics processing units (GPGPU) is dramatically changing the landscape of high performance computing in astronomy. In this paper, we identify and investigate several key decision areas, with a goal of simplifying the early adoption of GPGPU in astronomy. We consider the merits of OpenCL as an open standard in order to reduce risks associated with coding in a native, vendor-specific programming environment, and present a GPU programming philosophy based on using brute force solutions. We assert that effective use of new GPU-based supercomputing facilities will require a change in approach from astronomers. This will likely include improved programming training, an increased need for software development best practice through the use of profiling and related optimisation tools, and a greater reliance on third-party code libraries. As with any new technology, those willing to take the risks and make the investment of time and effort to become early adopters of GPGPU in astronomy, stand to reap great benefits.

We present results from our Parkes Multibeam H I survey of 3 loose groups of galaxies that are analogous to the Local Group. This is a survey of groups containing only spiral galaxies with mean separations of a few hundred kpc, and total areas of approximately 1 Mpc2; groups similar to our own Local Group. We present a census of the H I-rich objects in these groups down to a 1σ MHI sensitivity ~7×105M⊙, as well as the detailed properties of these detections from follow-up Compact Array observations. We found 7 new H I-rich members in the 3 groups, all of which have stellar counterparts and are, therefore, typical dwarf galaxies. The ratio of low-mass to high-mass gas-rich galaxies in these groups is less than in the Local Group meaning that the “missing satellite” problem is not unique. No high-velocity cloud analogs were found in any of the groups. If HVCs in these groups are the same as in the Local Group, this implies that HVCs must be located within ~300-400 kpc of the Milky Way.

The visual surface brightness relation is applied to the determination of parallaxes of white dwarfs on the assumption, borne out by previous studies of white dwarfs of known parallax, that these show only a small range of linear diameters.