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Development of the Northern European Ribes core collection based on a microsatellite (SSR) marker diversity analysis

Published online by Cambridge University Press:  05 January 2012

Kristiina Antonius*
Affiliation:
(RIBESCO P0) MTT Agrifood Research Finland, FI-31600Jokioinen, Finland
S. Karhu
Affiliation:
(RIBESCO P0) MTT Agrifood Research Finland, FI-31600Jokioinen, Finland
H. Kaldmäe
Affiliation:
(RIBESCO P1) Estonian University of Life Sciences, Kreutzwaldi 1, Tartu51014, Estonia
G. Lacis
Affiliation:
(RIBESCO P2) Latvian State Institute of Fruit Growing, Graudu-1, Dobele LV-3701, Latvia
R. Rugenius
Affiliation:
(RIBESCO P3) Institute of Horticulture, Lithuanian Research Centre for Agriculture and Forestry, Kauno 30, Babtai, Kaunas DistrictLT-54333, Lithuania
D. Baniulis
Affiliation:
(RIBESCO P3) Institute of Horticulture, Lithuanian Research Centre for Agriculture and Forestry, Kauno 30, Babtai, Kaunas DistrictLT-54333, Lithuania
A. Sasnauskas
Affiliation:
(RIBESCO P3) Institute of Horticulture, Lithuanian Research Centre for Agriculture and Forestry, Kauno 30, Babtai, Kaunas DistrictLT-54333, Lithuania
E. Schulte
Affiliation:
(RIBESCO P4) Bundessortenamt (Federal Office of Plant Varieties), Prüfstelle Wurzen, Torgauer Str. 100, D-04808Wurzen, Germany
A. Kuras
Affiliation:
(RIBESCO P5) Institute of Horticulture, Pomologiczna 18, 96-100Skierniewice, Poland
M. Korbin
Affiliation:
(RIBESCO P5) Institute of Horticulture, Pomologiczna 18, 96-100Skierniewice, Poland
Å. Gunnarsson
Affiliation:
(RIBESCO P7) Swedish University of Agricultural Science SLU, Balsgård, Fjälkestadsvägen 459, S-291 94Kristianstad, Sweden
G. Werlemark
Affiliation:
(RIBESCO P7) Swedish University of Agricultural Science SLU, Balsgård, Fjälkestadsvägen 459, S-291 94Kristianstad, Sweden
D. Ryliskis
Affiliation:
(RIBESCO P8) Vilnius University, Kairenu 43, LT-10239Vilnius, Lithuania
T. Todam-Andersen
Affiliation:
(RIBESCO P9) Department of Agriculture and Ecology, University of Copenhagen, Højbakkegård Alle 13DK-2630Taastrup, Denmark
L. Kokk
Affiliation:
Department of Gene Technology, Tallinn University of Technology, Akadeemia tee 15, Tallinn12618, Estonia
K. Järve
Affiliation:
Department of Gene Technology, Tallinn University of Technology, Akadeemia tee 15, Tallinn12618, Estonia
*
*Corresponding author. E-mail: kristiina.antonius@mtt.fi

Abstract

The purpose of the study was to support the selection process of the most valuable currant and gooseberry accessions cultivated in Northern Europe, in order to establish a decentralized core collection and, following the selection, to ensure sufficient genetic diversity in the selected collection. Molecular analyses of the material from nine project partners were run at seven different laboratories. The results were first analysed for each partner separately, and then combined to ensure sufficient genetic diversity in the core collection.

Type
Short Communication
Copyright
Copyright © NIAB 2011

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References

Baric, S, Monschein, S, Hoefer, M, Grill, D and Dalla Via, J (2008) Comparability of genotyping data obtained by different procedures – an inter-laboratory survey. The Journal of Horticultural Science & Biotechnology 83: 183190.CrossRefGoogle Scholar
Brennan, R, Jorgensen, L, Woodhead, M and Russell, J (2002) Development and characterization of SSR markers in Ribes species. Molecular Ecology Notes 2: 327330. DOI: 10.1046/j.1471-8286.2002.00233.x.CrossRefGoogle Scholar
Cryer, NC, Fenn, MGE, Turnbull, CJ and Wilkinson, MJ (2006) Allelic size standards and reference genotypes to unify international cocoa (Theobroma cacao L.) microsatellite data. Genetic Resources and Crop Evolution 53: 16431652. DOI: 10.1007/s10722-005-1286-9.CrossRefGoogle Scholar
George, ML, Regalado, E, Li, W, Cao, M, Dahlan, M, Pabendon, M, Warburton, ML, Xianchun, X and Hoisington, D (2004) Molecular characterization of Asian maize inbred lines by multiple laboratories. Theoretical and Applied Genetics 109: 8091.CrossRefGoogle ScholarPubMed
Karhu, S, Antonius, K, Kaldmäe, H, Pluta, S, Rumpunen, K, Ryliskis, D, Sasnauskas, A, Schulte, E, Strautina, S and Grout, B (2007) The core collection of the Northern European gene pool of Ribes created by RIBESCO project. Sodininkyste ir Darzininkyste 26: 179186.Google Scholar
Korpelainen, H, Kostamo, K and Virtanen, V (2007) Microsatellite marker identification using genome screening and restriction-ligation. Biotechniques 42: 479480 484–486.CrossRefGoogle ScholarPubMed
Peakall, R and Smouse, P (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6: 288295.CrossRefGoogle Scholar
This, P, Jung, A, Boccacci, P, Borrego, J, Botta, R, Costantini, L, Crespan, M, Dangl, GS, Eisenheld, C, Ferreira-Monteiro, F, Grando, S, Ibáñez, J, Lacombe, T, Laucou, V, Magalhães, R, Meredith, CP, Milani, N, Peterlunger, E, Regner, F, Zulini, L and Maul, E (2004) Development of a standard set of microsatellite reference alleles for identification of grape cultivars. Theoretical and Applied Genetics 109: 14481458.CrossRefGoogle ScholarPubMed
Supplementary material: File

Antonius supplementary table 1

Antonius supplementary table 1

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Antonius supplementary table 2

Antonius supplementary table 2

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Antonius supplementary table 3

Antonius supplementary table 3

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