Hostname: page-component-78c5997874-ndw9j Total loading time: 0 Render date: 2024-11-18T18:43:12.280Z Has data issue: false hasContentIssue false
  • English
  • Français

Huriella flakusii (Teloschistaceae, lichenized Ascomycota), a new species from the Colca Canyon region in Peru

Published online by Cambridge University Press:  04 March 2020

Karina Wilk Open the ORCID record for Karina Wilk [Opens in a new window]
Karina Wilk*
Affiliation:
W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512Krakow, Poland
*
Author for correspondence: Karina Wilk. E-mail: k.wilk@botany.pl
Get access Rights & Permissions [Opens in a new window]

Abstract

A new species, Huriella flakusii, is described from the arid region of the Colca Canyon in southern Peru, and is characterized by squamulose, orange thalli and abundant, crowded and aggregated, usually flexuous when compressed, reddish apothecia. The thalline cortex, proper margin and hypothecium are paraplectenchymatous. The ascospores are broadly ellipsoid, 10‒15 × 5.0‒9.5 µm, with rather thin septa, 2‒4 µm. Phylogenetic analyses of the DNA sequences of ITS, nuLSU and mrSSU rDNA markers revealed that the new species is nested within the Amundsenia-Squamulea subclade in the subfamily Xanthorioideae, and has a sister group relationship to Huriella loekoesiana from South Korea.

Keywords

Caloplaca s. lat.ITSmrSSUnuLSUphylogenySouth Americataxonomy
Type
Standard Papers
Information
The Lichenologist , Volume 52 , Issue 1 , January 2020 , pp. 37 - 47
Copyright
Copyright © British Lichen Society 2020

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Arup, U (1992) Caloplaca stantonii sp. nov. and its relationship to Caloplaca bolacina and other lobate to squamulose species in North America. Bryologist 95, 449–457.CrossRefGoogle Scholar
Arup, U (2009) The Caloplaca holocarpa group in the Nordic countries, except Iceland. Lichenologist 41, 111–130.CrossRefGoogle Scholar
Arup, U, Søchting, U and Frödén, P (2013) A new taxonomy of the family Teloschistaceae. Nordic Journal of Botany 31, 16–83.CrossRefGoogle Scholar
Bungartz, F (2002) Morphology and anatomy of the fertile structures. In Nash, TH III, Ryan, BG, Gries, C and Bungartz, F (eds), Lichen Flora of the Greater Sonoran Desert Region, Vol. 1. Tempe, Arizona: Lichens Unlimited, Arizona State University, pp. 24–35.Google Scholar
Cykowska, B and Flakus, A (2008) Flora mszaków i porostów Kanionu Colca (Peru) – badania rekonesansowe. Geologia 34, 193–203.Google Scholar
Fedorenko, NM, Stenroos, S, Thell, A, Kärnefelt, I and Kondratyuk, SY (2009) A phylogenetic analysis of xanthorioid lichens (Teloschistaceae, Ascomycota) based on ITS and mtSSU sequences. Bibliotheca Lichenologica 100, 49–84.Google Scholar
Feuerer, T (ed.) (2015) Checklists of lichens. Version 2015. Universität Hamburg. [WWW resource] URL http://webapp5.rrz.uni-hamburg.de/lichens/formular.php [Accessed April 2016].Google Scholar
Flakus, A and Kukwa, M (2007) New species and records of Lepraria (Stereocaulaceae, lichenized Ascomycota) from South America. Lichenologist 39, 463–474.CrossRefGoogle Scholar
Flakus, A, Kukwa, M and Czarnota, P (2006) Some interesting records of lichenized and lichenicolous Ascomycota from South America. Polish Botanical Journal 51, 209–215.Google Scholar
Gardes, M and Bruns, TD (1993) ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molecular Ecology 2, 113–118.CrossRefGoogle ScholarPubMed
Gaya, E (2009) Taxonomical revision of the Caloplaca saxicola group (Teloschistaceae, lichen-forming Ascomycota). Bibliotheca Lichenologica 101, 1–191.Google Scholar
Gaya, E, Navarro-Rosinés, P, Llimona, X, Hladun, N and Lutzoni, F (2008) Phylogenetic reassessment of the Teloschistaceae (lichen-forming Ascomycota, Lecanoromycetes). Mycological Research 112, 528–546.CrossRefGoogle Scholar
Gaya, E, Redelings, BD, Navarro-Rosinés, P, Llimona, X, De Cáceres, M and Lutzoni, F (2011) Align or not to align? Resolving species complexes within the Caloplaca saxicola group as a case study. Mycologia 103, 361–378.CrossRefGoogle ScholarPubMed
Gaya, E, Högnabba, F, Holguin, Á, Molnar, K, Fernández-Brime, S, Stenroos, S, Arup, U, Søchting, U, van den Boom, P, Lücking, R, et al. (2012) Implementing a cumulative supermatrix approach for a comprehensive phylogenetic study of the Teloschistales (Pezizomycotina, Ascomycota). Molecular Phylogenetics and Evolution 63, 374–387.CrossRefGoogle Scholar
Gaya, E, Fernández-Brime, S, Vargas, R, Lachlan, RF, Gueidan, C, Ramírez-Mejía, M and Lutzoni, F (2015) The adaptive radiation of lichen-forming Teloschistaceae is associated with sun-screening pigments and a bark-to-rock substrate shift. Proceedings of the National Academy of Sciences of the United States of America 112, 11600–11605.CrossRefGoogle Scholar
Hale, ME (1983) Cortical structure in Physcia and Phaeophyscia. Lichenologist 15, 157–160.CrossRefGoogle Scholar
Healey, A, Furtado, A, Cooper, T and Henry, RJ (2014) Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species. Plant Methods 10, 21–28.CrossRefGoogle ScholarPubMed
Hopple, JS Jr. and Vilgalys, R (1999) Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly. Molecular Phylogenetics and Evolution 13, 1–19.CrossRefGoogle ScholarPubMed
Kärnefelt, I (1989) Morphology and phylogeny in the Teloschistales. Cryptogamic Botany 1, 147–203.Google Scholar
Kondratyuk, SY, Kärnefelt, I, Elix, JA and Thell, A (2007) New species of the genus Caloplaca in Australia. Bibliotheca Lichenologica 95, 341–386.Google Scholar
Kondratyuk, SY, Jeong, M-H, Yu, N-H, Kärnefelt, I, Thell, A, Elix, JA, Kim, J, Kondratiuk, AS and Hur, J-S (2013) Four new genera of teloschistoid lichens (Teloschistaceae, Ascomycota) based on molecular phylogeny. Acta Botanica Hungarica 55, 251–274.CrossRefGoogle Scholar
Kondratyuk, SY, Jeong, M-H, Yu, N-N, Kärnefelt, I, Thell, A, Elix, JA, Kim, J, Kondratiuk, A and Hur, J-S (2014) A revised taxonomy for the subfamily Caloplacoideae (Teloschistaceae, Ascomycota) based on molecular phylogeny. Acta Botanica Hungarica 56, 93–123.CrossRefGoogle Scholar
Kondratyuk, SY, Kärnefelt, I, Thell, A, Elix, JA, Kim, J, Kondratiuk, AS and Hur, J-S (2015 a) Brownlielloideae, a new subfamily in the Teloschistaceae (Lecanoromycetes, Ascomycota). Acta Botanica Hungarica 57, 321–343.CrossRefGoogle Scholar
Kondratyuk, SY, Kim, JA, Yu, N-H, Jeong, M-H, Jang, SH, Kondratiuk, AS, Zarei-Darki, B and Hur, J-S (2015 b) Zeroviella, a new genus of xanthorioid lichens (Teloschistaceae, Ascomycota) proved by three gene phylogeny. Ukrainian Botanical Journal 72, 574–584.CrossRefGoogle Scholar
Kondratyuk, SY, Lokös, L, Upreti, DK, Nayaka, S, Mishra, GK, Ravera, S, Jeong, M-H, Jang, S-H, Park, JS and Hur, J-S (2017) New monophyletic branches of the Teloschistaceae (lichen-forming Ascomycota) proved by three gene phylogeny. Acta Botanica Hungarica 59, 71–136.CrossRefGoogle Scholar
Kondratyuk, SY, Lokös, L, Halda, JP, Farkas, E, Upreti, DK, Thell, A, Woo, J-J, Oh, S-O and Hur, J-S (2018) New and noteworthy lichen-forming and lichenicolous fungi 7. Acta Botanica Hungarica 60, 115–184.CrossRefGoogle Scholar
Lanfear, R, Calcott, B, Ho, SYW and Guindon, S (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29, 1695–1701.CrossRefGoogle ScholarPubMed
Larsson, A (2014) AliView: a fast and lightweight alignment viewer and editor for large data sets. Bioinformatics 22, 3276–3278.CrossRefGoogle Scholar
Magnusson, AH (1944) Some species of Caloplaca from North America. Botaniska Notiser 1944, 63–79.Google Scholar
Malme, GOA (1926) Lichenes blasteniospori Herbarii Regnelliani. Arkiv för Botanik 20A(9), 1–51.Google Scholar
Moncalvo, J-M, Rehner, SA and Vilgalys, R (1993) Systematics of Lyophyllum section Difformia based on evidence from culture studies and ribosomal DNA sequences. Mycologia 85, 788–794.CrossRefGoogle Scholar
Nimis, PL (2016) The Lichens of Italy. A Second Annotated Catalogue. Trieste: EUT – Edizioni Università di Trieste.Google Scholar
Nuñez-Zapata, J, Divakar, PK, Huallparimachi, G, Holgado, ME, Vela Clavo, Z, Pavlich, M and Crespo, A (2015) Nuevos registros de la liquenobiota del Santuario Histórico de Machu Picchu, Perú. Revista Peruana de Biología 22, 323–328.CrossRefGoogle Scholar
Paulo, A and Gałaś, A (eds) (2008) Polskie badania w Kanionie Colca i Dolinie Wulkanów. Kwartalnik AGH Geologia 34(2/1), 1–242.Google Scholar
Paulo, A, Galaś, A and Galaś, S (2014) Planning the Colca Canyon and the Valley of the Volcanoes National Park in South Peru. Environmental Earth Sciences 71, 1021–1032.CrossRefGoogle Scholar
Pegler, DN, Lodge, DJ and Nakasone, KK (1998) The pantropical genus Macrocybe gen. nov. Mycologia 90, 494–504.CrossRefGoogle Scholar
Ramos, D (2014) Lista de especies de líquenes y hongos liquenícolas del Perú – [Checklist of lichens and lichenicolous fungi of Peru]. Glalia 6, 1–49.Google Scholar
Rodríguez, EF, Ramírez, ÁM, Alvítez, E, Pollack, L, Leiva, S and Aguirre, R (2017) Catálogo de la liquenobiota de la región La Libertad, Perú [Catalogue of the lichen biota of La Libertad region, Peru]. Arnaldoa 24, 497–522.CrossRefGoogle Scholar
Ronquist, F, Teslenko, M, van der Mark, P, Ayres, DL, Darling, A, Höhna, S, Larget, B, Liu, L, Suchard, MA and Huelsenbeck, JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61, 539–542.CrossRefGoogle ScholarPubMed
Ryan, BD, Bungartz, F and Nash, TH III (2002) Morphology and anatomy of the lichen thallus. In Nash, TH III, Ryan, BD, Gries, C and Bungartz, F (eds), Lichen Flora of the Greater Sonoran Desert Region, Vol. I. Tempe, Arizona: Lichens Unlimited, Arizona State University, pp. 8–23.Google Scholar
Ryan, BD, Bungartz, F, Hagedorn, G and Rambold, G (eds) (2012) LIAS Glossary – A Wiki-based Online Dictionary for Ascomycete Terminology used by LIAS, the Global Information System for Lichenized and Non-Lichenized Ascomycetes. [WWW resource] URL http://glossary.lias.netGoogle Scholar
Särkinen, T, Staats, M, Richardson, JE, Cowan, RS and Bakker, FT (2012) How to open the treasure chest? Optimising DNA extraction from herbarium specimens. PLoS ONE 7, e43808.CrossRefGoogle ScholarPubMed
Silvestro, D and Michalak, I (2012) raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335–337.CrossRefGoogle Scholar
Sobiech-Matura, K and Węgrzyn, M (2008) Wstępne opracowanie bioty porostowej w obrębie Kanionu Colca oraz Doliny Wulkanów (Peru). Geologia 34, 205–209.Google Scholar
Søchting, U and Lutzoni, F (2003) Molecular phylogenetic study at the generic boundary between the lichen-forming fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae). Mycological Research 107, 1266–1276.CrossRefGoogle Scholar
Søchting, U, Søgaard, MZ, Elix, JA, Arup, U, Elvebakk, A and Sancho, LG (2014 a) Catenarina (Teloschistaceae, Ascomycota), a new Southern Hemisphere genus with 7-chlorocatenarin. Lichenologist 46, 175–187.CrossRefGoogle Scholar
Søchting, U, Garrido-Benavent, I, Seppelt, R, Castello, M, Pérez-Ortega, S, de los Ríos Murillo, A, Frödén, P and Arup, U (2014 b) Charcotiana and Amundsenia, two new genera in Teloschistaceae (lichenized Ascomycota, subfamily Xanthorioideae) hosting two new species from continental Antarctica, and Austroplaca frigida, a new name for a continental Antarctic species. Lichenologist 46, 763–782.CrossRefGoogle Scholar
Soukup, J (1965) Lista de Líquenes del Perú. Biota VI 45, 28–45.Google Scholar
Stamatakis, A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313.CrossRefGoogle ScholarPubMed
Tamura, K, Stecher, G, Peterson, D, Filipski, A and Kumar, S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30, 2725–2729.CrossRefGoogle ScholarPubMed
Vilgalys, R and Hester, M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172, 4238–4246.CrossRefGoogle ScholarPubMed
Vondrák, J, Říha, P, Arup, U and Søchting, U (2009) The taxonomy of the Caloplaca citrina group (Teloschistaceae) in the Black Sea region; with contributions to the cryptic species concept in lichenology. Lichenologist 41, 571–604.CrossRefGoogle Scholar
Vondrák, J, Frolov, I, Arup, U and Khodosovtsev, A (2013) Methods for phenotypic evaluation of crustose lichens with emphasis on Teloschistaceae. Chernomorsky Botanicheskii Zhurnal 9, 382–405.Google Scholar
Vondrák, J, Halici, MG, Güllü, M and Demirel, M (2016) Taxonomy of the genus Athallia and its diversity in Turkey. Turkish Journal of Botany 40, 319–328.CrossRefGoogle Scholar
Wetmore, CM (2003) The Caloplaca squamosa group in North and Central America. Bryologist 106, 147–156.CrossRefGoogle Scholar
Wetmore, CM (2007) Caloplaca. In Nash, TH III, Gries, C and Bungartz, F (eds), Lichen Flora of the Greater Sonoran Desert Region, Vol. 3. Tempe, Arizona: Lichens Unlimited, Arizona State University, pp. 179–220.Google Scholar
White, TJ, Bruns, T, Lee, S and Taylor, J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In Innis, N, Gelfand, D, Sninsky, J and White, T (eds), PCR Protocols: A Guide to Methods and Applications. New York: Academic Press, pp. 315–322.Google Scholar
Wilk, K and Flakus, A (2017) Eight Caloplaca species newly recorded from Bolivia, including C. crocina comb. nov. Mycotaxon 132, 125–140.CrossRefGoogle Scholar
Wilk, T (2010) Notes on the birds of Canyon Colca, Southern Peru. In Mirek, Z, Flakus, A, Krzanowski, A, Paulo, A and Wojtusiak, J (eds), The Nature and Culture of Latin America. Review of Polish Studies. Kraków: W. Szafer Institute of Botany, Polish Academy of Sciences, pp. 285–293.Google Scholar
Yoshimura, I and Shimada, R (1980) Fine structures of lichen plectenchymas viewed with the scanning electron microscope. Bulletin of Kochi Gakuen Junior College 11, 13–28.Google Scholar
Zoller, S, Scheidegger, C and Sperisen, C (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31, 511–516.CrossRefGoogle Scholar